ENSG00000175216

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000312055 ENSG00000175216 HEK293_OSMI2_2hA HEK293_TMG_2hB CKAP5 protein_coding protein_coding 69.26709 41.4595 94.00784 3.89201 0.7133971 1.180884 20.324640 8.0428668 28.438044 2.7575188 1.1690286 1.8207551 0.27886250 0.189200000 0.30240000 0.11320000 3.198108e-01 2.213917e-56 FALSE TRUE
ENST00000354558 ENSG00000175216 HEK293_OSMI2_2hA HEK293_TMG_2hB CKAP5 protein_coding protein_coding 69.26709 41.4595 94.00784 3.89201 0.7133971 1.180884 2.143957 6.2526189 0.000000 1.3398896 0.0000000 -9.2906223 0.05280833 0.153933333 0.00000000 -0.15393333 3.373490e-25 2.213917e-56 FALSE TRUE
ENST00000526876 ENSG00000175216 HEK293_OSMI2_2hA HEK293_TMG_2hB CKAP5 protein_coding protein_coding 69.26709 41.4595 94.00784 3.89201 0.7133971 1.180884 1.535274 0.0000000 4.962465 0.0000000 1.2812895 8.9578174 0.01626667 0.000000000 0.05270000 0.05270000 6.369386e-11 2.213917e-56 FALSE FALSE
ENST00000529230 ENSG00000175216 HEK293_OSMI2_2hA HEK293_TMG_2hB CKAP5 protein_coding protein_coding 69.26709 41.4595 94.00784 3.89201 0.7133971 1.180884 3.716146 4.1394990 3.304984 0.8568138 1.0304750 -0.3239353 0.06124167 0.097900000 0.03513333 -0.06276667 6.533798e-02 2.213917e-56 FALSE TRUE
ENST00000533413 ENSG00000175216 HEK293_OSMI2_2hA HEK293_TMG_2hB CKAP5 protein_coding retained_intron 69.26709 41.4595 94.00784 3.89201 0.7133971 1.180884 23.091306 22.4826309 19.908198 1.1018964 1.1702205 -0.1753653 0.39236250 0.547033333 0.21196667 -0.33506667 1.744432e-14 2.213917e-56 FALSE TRUE
MSTRG.5458.11 ENSG00000175216 HEK293_OSMI2_2hA HEK293_TMG_2hB CKAP5 protein_coding   69.26709 41.4595 94.00784 3.89201 0.7133971 1.180884 7.200705 0.0000000 14.117505 0.0000000 0.7960649 10.4642910 0.07565000 0.000000000 0.15016667 0.15016667 2.213917e-56 2.213917e-56 FALSE TRUE
MSTRG.5458.4 ENSG00000175216 HEK293_OSMI2_2hA HEK293_TMG_2hB CKAP5 protein_coding   69.26709 41.4595 94.00784 3.89201 0.7133971 1.180884 9.746217 0.2548075 20.691916 0.2466567 0.1960088 6.2886764 0.10387500 0.005233333 0.22013333 0.21490000 5.736408e-03 2.213917e-56 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000175216 E001 11.2616444 0.0299748983 6.514023e-05 3.566083e-04 11 46743048 46743535 488 - 0.826 1.346 1.893
ENSG00000175216 E002 3.3296529 0.0796842986 2.361050e-02 5.900897e-02 11 46743536 46743539 4 - 0.430 0.868 1.912
ENSG00000175216 E003 671.1726794 0.0095431074 1.119148e-20 7.767492e-19 11 46743540 46744016 477 - 2.580 3.057 1.587
ENSG00000175216 E004 605.6807703 0.0097725685 2.526158e-11 4.927648e-10 11 46744017 46744164 148 - 2.607 2.958 1.167
ENSG00000175216 E005 592.0043979 0.0113352812 1.248721e-06 1.016179e-05 11 46744165 46744265 101 - 2.635 2.912 0.921
ENSG00000175216 E006 1.4853014 0.0284570527 4.650190e-01 6.047258e-01 11 46744266 46744425 160 - 0.430 0.301 -0.762
ENSG00000175216 E007 688.6515074 0.0063982301 5.297304e-09 6.880285e-08 11 46744426 46744577 152 - 2.713 2.965 0.841
ENSG00000175216 E008 634.2550571 0.0026812401 1.701991e-15 6.246360e-14 11 46750274 46750433 160 - 2.682 2.925 0.810
ENSG00000175216 E009 489.1190845 0.0008490638 1.323436e-23 1.254232e-21 11 46750528 46750611 84 - 2.576 2.805 0.763
ENSG00000175216 E010 695.6783722 0.0007902133 2.647858e-19 1.563550e-17 11 46751118 46751255 138 - 2.748 2.934 0.620
ENSG00000175216 E011 730.4468574 0.0010386715 8.713895e-10 1.305926e-08 11 46751346 46751534 189 - 2.789 2.929 0.467
ENSG00000175216 E012 475.4613630 0.0009546218 4.081186e-06 2.961197e-05 11 46752635 46752710 76 - 2.612 2.731 0.397
ENSG00000175216 E013 576.2870303 0.0017938933 1.927144e-04 9.326649e-04 11 46753310 46753453 144 - 2.698 2.809 0.368
ENSG00000175216 E014 328.5857208 0.0002681170 2.335039e-05 1.425424e-04 11 46753454 46753488 35 - 2.457 2.564 0.358
ENSG00000175216 E015 228.7091219 0.0002091854 4.598808e-03 1.481710e-02 11 46753489 46753497 9 - 2.307 2.395 0.292
ENSG00000175216 E016 536.6984572 0.0010800708 1.292469e-02 3.573576e-02 11 46754888 46754983 96 - 2.682 2.753 0.236
ENSG00000175216 E017 496.8435147 0.0001998274 4.743980e-04 2.062260e-03 11 46754984 46755067 84 - 2.646 2.724 0.260
ENSG00000175216 E018 625.7810767 0.0011899533 3.762936e-02 8.663615e-02 11 46758923 46759043 121 - 2.752 2.813 0.202
ENSG00000175216 E019 661.7388934 0.0012767508 3.411508e-01 4.850681e-01 11 46759269 46759442 174 - 2.785 2.820 0.119
ENSG00000175216 E020 1.0414660 0.0124140271 4.868834e-02 1.068368e-01 11 46760352 46760375 24 - 0.395 0.000 -11.943
ENSG00000175216 E021 516.5716704 0.0008395095 8.601918e-01 9.138106e-01 11 46760612 46760784 173 - 2.683 2.702 0.064
ENSG00000175216 E022 523.7469457 0.0001456355 1.925994e-02 4.989863e-02 11 46762000 46762193 194 - 2.676 2.732 0.186
ENSG00000175216 E023 400.3313754 0.0001449987 1.205036e-01 2.206792e-01 11 46762627 46762762 136 - 2.563 2.609 0.154
ENSG00000175216 E024 461.2811421 0.0002350848 7.762792e-01 8.559425e-01 11 46762976 46763145 170 - 2.634 2.656 0.072
ENSG00000175216 E025 259.7845301 0.0007350840 1.028076e-01 1.947718e-01 11 46763146 46763179 34 - 2.402 2.374 -0.093
ENSG00000175216 E026 416.8213722 0.0008766870 1.238917e-01 2.255171e-01 11 46763481 46763630 150 - 2.604 2.584 -0.065
ENSG00000175216 E027 393.1180378 0.0026621807 1.872137e-01 3.102356e-01 11 46765131 46765256 126 - 2.580 2.555 -0.082
ENSG00000175216 E028 332.2090525 0.0011502407 2.768224e-03 9.577611e-03 11 46767575 46767663 89 - 2.519 2.455 -0.213
ENSG00000175216 E029 361.0674099 0.0003030035 2.246077e-04 1.068778e-03 11 46769963 46770098 136 - 2.556 2.492 -0.213
ENSG00000175216 E030 0.8094222 0.1021675700 6.887564e-01 7.908051e-01 11 46770099 46770235 137 - 0.213 0.302 0.661
ENSG00000175216 E031 0.0000000       11 46770236 46770263 28 -      
ENSG00000175216 E032 410.1033032 0.0002790632 4.341524e-05 2.482207e-04 11 46770788 46770982 195 - 2.612 2.545 -0.223
ENSG00000175216 E033 314.1277382 0.0003830040 1.260283e-06 1.024488e-05 11 46776255 46776383 129 - 2.505 2.406 -0.329
ENSG00000175216 E034 333.4432270 0.0008390642 8.657383e-06 5.835047e-05 11 46777439 46777552 114 - 2.531 2.434 -0.324
ENSG00000175216 E035 259.8379391 0.0006523936 1.034732e-02 2.962025e-02 11 46778139 46778191 53 - 2.410 2.358 -0.174
ENSG00000175216 E036 342.5278028 0.0003454952 2.741281e-09 3.751011e-08 11 46778192 46778313 122 - 2.549 2.430 -0.398
ENSG00000175216 E037 424.6265003 0.0020257074 5.495231e-11 1.012699e-09 11 46778460 46778599 140 - 2.657 2.479 -0.591
ENSG00000175216 E038 348.6117441 0.0055246003 2.511699e-05 1.522143e-04 11 46780194 46780319 126 - 2.567 2.406 -0.535
ENSG00000175216 E039 191.3368141 0.0060017739 4.361058e-04 1.913228e-03 11 46780428 46780485 58 - 2.305 2.153 -0.507
ENSG00000175216 E040 0.5138669 0.0208352376 9.155559e-01 9.505531e-01 11 46783190 46783273 84 - 0.153 0.177 0.246
ENSG00000175216 E041 247.2809085 0.0008250278 4.353675e-12 9.609585e-11 11 46783274 46783368 95 - 2.425 2.240 -0.616
ENSG00000175216 E042 326.9263959 0.0036279493 2.064063e-07 1.973307e-06 11 46784488 46784628 141 - 2.543 2.369 -0.581
ENSG00000175216 E043 145.4564798 0.0112841594 6.063308e-05 3.345787e-04 11 46784629 46784631 3 - 2.207 1.981 -0.756
ENSG00000175216 E044 187.3429621 0.0088778607 4.054574e-04 1.795738e-03 11 46784632 46784673 42 - 2.302 2.133 -0.567
ENSG00000175216 E045 1.1448190 0.0113822454 4.946812e-01 6.316235e-01 11 46784674 46784674 1 - 0.266 0.398 0.829
ENSG00000175216 E046 259.3734099 0.0077193689 1.462173e-03 5.513949e-03 11 46788681 46788773 93 - 2.433 2.299 -0.447
ENSG00000175216 E047 243.8578588 0.0123462011 2.575780e-03 8.991593e-03 11 46790076 46790186 111 - 2.412 2.257 -0.518
ENSG00000175216 E048 270.8794944 0.0056220405 8.769816e-08 9.000571e-07 11 46790470 46790583 114 - 2.474 2.253 -0.736
ENSG00000175216 E049 358.9532204 0.0018787002 2.814289e-15 1.005011e-13 11 46795594 46795776 183 - 2.596 2.372 -0.747
ENSG00000175216 E050 287.0450522 0.0074648601 3.280385e-05 1.933275e-04 11 46796812 46796940 129 - 2.489 2.307 -0.607
ENSG00000175216 E051 136.6030396 0.0074448963 5.022390e-05 2.829128e-04 11 46797805 46797843 39 - 2.174 1.972 -0.677
ENSG00000175216 E052 212.9387189 0.0036134246 2.527768e-10 4.158372e-09 11 46797844 46797969 126 - 2.374 2.131 -0.812
ENSG00000175216 E053 184.0474989 0.0104092240 1.785101e-04 8.716031e-04 11 46798083 46798172 90 - 2.300 2.102 -0.664
ENSG00000175216 E054 196.5714633 0.0086408285 3.264597e-05 1.924953e-04 11 46801200 46801304 105 - 2.330 2.127 -0.678
ENSG00000175216 E055 0.7708142 0.0153787590 6.060460e-01 7.263103e-01 11 46802054 46802318 265 - 0.266 0.176 -0.756
ENSG00000175216 E056 313.3474063 0.0059706050 1.752958e-11 3.504935e-10 11 46808031 46808144 114 - 2.551 2.262 -0.963
ENSG00000175216 E057 319.9873198 0.0061497480 4.632942e-16 1.826632e-14 11 46809400 46809500 101 - 2.574 2.215 -1.195
ENSG00000175216 E058 302.0512444 0.0213371576 3.246354e-07 2.982455e-06 11 46809742 46809874 133 - 2.550 2.183 -1.226
ENSG00000175216 E059 262.9244825 0.0215446612 5.233224e-05 2.934320e-04 11 46811007 46811178 172 - 2.474 2.191 -0.944
ENSG00000175216 E060 86.6393930 0.0316518792 9.661734e-03 2.793161e-02 11 46816198 46816202 5 - 1.980 1.761 -0.740
ENSG00000175216 E061 373.0949462 0.0140073625 5.246438e-08 5.631924e-07 11 46816203 46816404 202 - 2.632 2.320 -1.040
ENSG00000175216 E062 355.5850559 0.0158160084 7.839649e-07 6.661283e-06 11 46818310 46818503 194 - 2.608 2.310 -0.991
ENSG00000175216 E063 0.1451727 0.0434750554 1.000000e+00   11 46820628 46821174 547 - 0.083 0.000 -9.135
ENSG00000175216 E064 204.0842310 0.0112797685 1.391570e-07 1.375789e-06 11 46821175 46821248 74 - 2.367 2.069 -0.996
ENSG00000175216 E065 123.5761663 0.0002715030 2.052341e-20 1.378758e-18 11 46821249 46821268 20 - 2.159 1.817 -1.148
ENSG00000175216 E066 0.0000000       11 46826762 46826853 92 -      
ENSG00000175216 E067 1.4080945 0.1520783256 3.062783e-01 4.484319e-01 11 46835273 46835404 132 - 0.267 0.484 1.271
ENSG00000175216 E068 4.0246016 0.0038954560 1.984723e-01 3.242999e-01 11 46846088 46846219 132 - 0.736 0.545 -0.827
ENSG00000175216 E069 103.6812143 0.0045735688 2.095330e-12 4.877183e-11 11 46846220 46846308 89 - 2.088 1.722 -1.230