ENSG00000175061

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000481898 ENSG00000175061 HEK293_OSMI2_2hA HEK293_TMG_2hB SNHG29 lncRNA lncRNA 740.1222 1292.002 615.3179 203.0282 8.968674 -1.070192 42.27683 66.94414 47.96462 12.010999 2.898490 -0.4809018 0.05711667 0.05136667 0.07790000 0.026533333 8.636650e-04 1.725932e-24   FALSE
ENST00000580180 ENSG00000175061 HEK293_OSMI2_2hA HEK293_TMG_2hB SNHG29 lncRNA lncRNA 740.1222 1292.002 615.3179 203.0282 8.968674 -1.070192 119.74656 218.99176 102.75039 23.059299 4.349893 -1.0916583 0.15938333 0.17283333 0.16690000 -0.005933333 9.121220e-01 1.725932e-24   FALSE
ENST00000660020 ENSG00000175061 HEK293_OSMI2_2hA HEK293_TMG_2hB SNHG29 lncRNA lncRNA 740.1222 1292.002 615.3179 203.0282 8.968674 -1.070192 41.54163 38.66532 80.41198 8.492248 2.645275 1.0561766 0.06165833 0.02930000 0.13063333 0.101333333 1.725932e-24 1.725932e-24   FALSE
ENST00000663781 ENSG00000175061 HEK293_OSMI2_2hA HEK293_TMG_2hB SNHG29 lncRNA lncRNA 740.1222 1292.002 615.3179 203.0282 8.968674 -1.070192 350.48542 700.98041 213.42771 120.735186 7.545168 -1.7155796 0.45100417 0.53953333 0.34696667 -0.192566667 5.909666e-13 1.725932e-24   FALSE
ENST00000688805 ENSG00000175061 HEK293_OSMI2_2hA HEK293_TMG_2hB SNHG29 lncRNA lncRNA 740.1222 1292.002 615.3179 203.0282 8.968674 -1.070192 40.16927 69.10840 44.52702 14.100248 7.211670 -0.6340647 0.05604167 0.05270000 0.07243333 0.019733333 4.734552e-01 1.725932e-24   FALSE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000175061 E001 2.214452e-01 0.0742506434 1.000000e+00   17 16438767 16438821 55 + 0.001 0.091 7.347
ENSG00000175061 E002 9.169293e-01 0.0521655582 8.891913e-01 9.331580e-01 17 16438822 16438915 94 + 0.281 0.284 0.023
ENSG00000175061 E003 1.873511e+00 0.1282352794 3.992794e-01 5.430093e-01 17 16438916 16438974 59 + 0.281 0.512 1.309
ENSG00000175061 E004 2.279781e+00 0.0070363460 3.130346e-02 7.448812e-02 17 16438975 16438981 7 + 0.163 0.604 2.731
ENSG00000175061 E005 2.131488e+00 0.0069578472 4.337761e-02 9.725387e-02 17 16438982 16438982 1 + 0.163 0.578 2.616
ENSG00000175061 E006 2.283003e+00 0.0064829820 1.530951e-01 2.658814e-01 17 16438983 16438984 2 + 0.281 0.579 1.616
ENSG00000175061 E007 2.283003e+00 0.0064829820 1.530951e-01 2.658814e-01 17 16438985 16438986 2 + 0.281 0.579 1.616
ENSG00000175061 E008 2.873157e+00 0.0078276445 7.785413e-01 8.575035e-01 17 16438987 16438991 5 + 0.515 0.604 0.409
ENSG00000175061 E009 2.873157e+00 0.0078276445 7.785413e-01 8.575035e-01 17 16438992 16438992 1 + 0.515 0.604 0.409
ENSG00000175061 E010 5.285539e+00 0.0303814478 3.197542e-01 4.628504e-01 17 16438993 16439000 8 + 0.621 0.831 0.858
ENSG00000175061 E011 5.911078e+00 0.0209364390 3.010471e-01 4.428158e-01 17 16439001 16439001 1 + 0.666 0.873 0.830
ENSG00000175061 E012 5.911078e+00 0.0209364390 3.010471e-01 4.428158e-01 17 16439002 16439003 2 + 0.666 0.873 0.830
ENSG00000175061 E013 6.092783e+00 0.0336048752 2.950776e-01 4.361925e-01 17 16439004 16439004 1 + 0.666 0.885 0.876
ENSG00000175061 E014 7.089207e+00 0.0171443257 3.161423e-01 4.589019e-01 17 16439005 16439009 5 + 0.744 0.936 0.747
ENSG00000175061 E015 7.387971e+00 0.0095940844 5.568537e-01 6.854194e-01 17 16439010 16439010 1 + 0.810 0.937 0.487
ENSG00000175061 E016 7.387971e+00 0.0095940844 5.568537e-01 6.854194e-01 17 16439011 16439011 1 + 0.810 0.937 0.487
ENSG00000175061 E017 1.067059e+01 0.0016784224 1.850888e-01 3.076028e-01 17 16439012 16439015 4 + 0.893 1.093 0.741
ENSG00000175061 E018 1.453267e+01 0.0012107560 2.019210e-02 5.188580e-02 17 16439016 16439019 4 + 0.941 1.232 1.054
ENSG00000175061 E019 1.991139e+01 0.0009256423 1.820721e-02 4.758248e-02 17 16439020 16439029 10 + 1.092 1.355 0.928
ENSG00000175061 E020 1.804092e+01 0.0010104840 1.653272e-02 4.391268e-02 17 16439030 16439033 4 + 1.042 1.318 0.983
ENSG00000175061 E021 1.948441e+01 0.0012190413 4.260310e-02 9.582245e-02 17 16439034 16439036 3 + 1.108 1.341 0.824
ENSG00000175061 E022 2.058049e+01 0.0190735254 4.048226e-01 5.485122e-01 17 16439037 16439037 1 + 1.205 1.338 0.465
ENSG00000175061 E023 3.852409e+02 0.0059297084 4.687458e-09 6.148054e-08 17 16439038 16439055 18 + 2.686 2.475 -0.703
ENSG00000175061 E024 1.327521e+03 0.0041272911 3.320638e-04 1.508850e-03 17 16439056 16439060 5 + 3.141 3.059 -0.273
ENSG00000175061 E025 3.840333e+01 0.0070861844 2.285502e-10 3.787783e-09 17 16439061 16439062 2 + 1.792 1.398 -1.344
ENSG00000175061 E026 6.791890e+01 0.0086054256 2.088601e-05 1.289907e-04 17 16439063 16439077 15 + 1.946 1.720 -0.764
ENSG00000175061 E027 1.317895e+02 0.0156511214 4.276371e-03 1.391764e-02 17 16439078 16439245 168 + 2.193 2.028 -0.553
ENSG00000175061 E028 1.032676e+02 0.0253738000 3.318743e-02 7.817348e-02 17 16439246 16439320 75 + 2.080 1.928 -0.512
ENSG00000175061 E029 1.073080e+02 0.0109243458 1.407981e-03 5.333154e-03 17 16439321 16439326 6 + 2.104 1.941 -0.545
ENSG00000175061 E030 4.743809e+03 0.0004246631 8.896052e-14 2.548511e-12 17 16439327 16439390 64 + 3.548 3.674 0.418
ENSG00000175061 E031 4.628565e+03 0.0004345635 5.023729e-15 1.728533e-13 17 16439391 16439393 3 + 3.533 3.664 0.436
ENSG00000175061 E032 5.057646e+03 0.0003286157 5.981547e-16 2.327349e-14 17 16439394 16439414 21 + 3.577 3.702 0.413
ENSG00000175061 E033 1.081022e+02 0.0095926718 8.605422e-28 1.198729e-25 17 16439415 16439504 90 + 2.330 1.714 -2.067
ENSG00000175061 E034 6.815101e+01 0.0004156688 1.819676e-67 2.444909e-64 17 16439505 16439527 23 + 2.165 1.465 -2.365
ENSG00000175061 E035 4.050700e+02 0.0002377208 2.538273e-46 1.252261e-43 17 16439528 16439531 4 + 2.720 2.503 -0.725
ENSG00000175061 E036 6.949219e+02 0.0015957129 1.821610e-36 4.951199e-34 17 16439532 16439580 49 + 2.967 2.719 -0.824
ENSG00000175061 E037 1.232086e+03 0.0013802549 1.285897e-39 4.334687e-37 17 16439581 16439659 79 + 3.200 2.977 -0.739
ENSG00000175061 E038 1.153893e+03 0.0001380017 2.544570e-100 7.775181e-97 17 16439660 16439692 33 + 3.161 2.964 -0.657
ENSG00000175061 E039 8.346484e+02 0.0008938600 3.700949e-37 1.068801e-34 17 16439693 16439703 11 + 3.014 2.823 -0.637
ENSG00000175061 E040 2.789830e+02 0.0062190109 6.683042e-45 3.095555e-42 17 16439704 16440035 332 + 2.731 2.137 -1.980
ENSG00000175061 E041 1.277025e+02 0.0002643911 5.639562e-70 8.479349e-67 17 16440036 16440110 75 + 2.362 1.857 -1.692
ENSG00000175061 E042 1.905101e+02 0.0002151887 2.905399e-64 3.356215e-61 17 16440111 16440184 74 + 2.482 2.094 -1.298
ENSG00000175061 E043 6.010714e+03 0.0001334655 4.583403e-05 2.606530e-04 17 16440185 16440253 69 + 3.690 3.767 0.255
ENSG00000175061 E044 4.576528e+03 0.0007572166 1.738705e-03 6.404054e-03 17 16441074 16441130 57 + 3.561 3.648 0.290
ENSG00000175061 E045 9.586333e+01 0.0095970875 7.850850e-10 1.187671e-08 17 16441131 16441225 95 + 2.151 1.827 -1.087
ENSG00000175061 E046 1.191512e+02 0.0151595890 5.299150e-08 5.683035e-07 17 16441226 16441356 131 + 2.245 1.919 -1.091
ENSG00000175061 E047 8.061152e+01 0.0191019737 2.487292e-05 1.509563e-04 17 16441357 16441365 9 + 2.055 1.770 -0.959
ENSG00000175061 E048 8.064106e+01 0.0104638190 2.240786e-06 1.724389e-05 17 16441366 16441367 2 + 2.039 1.786 -0.851
ENSG00000175061 E049 1.695086e+04 0.0011675520 7.014049e-09 8.898349e-08 17 16441368 16442076 709 + 4.108 4.221 0.376
ENSG00000175061 E050 1.614903e+01 0.0728911757 7.921808e-01 8.670869e-01 17 16460893 16461245 353 + 1.138 1.213 0.270
ENSG00000175061 E051 2.862609e+01 0.0550072849 1.115226e-01 2.077896e-01 17 16461246 16462032 787 + 1.241 1.491 0.871
ENSG00000175061 E052 2.304251e+01 0.0400194001 1.138067e-06 9.337119e-06 17 16462833 16462941 109 + 1.645 1.093 -1.923
ENSG00000175061 E053 4.860185e+00 0.1170772390 1.697762e-03 6.276067e-03 17 16463164 16463166 3 + 1.060 0.457 -2.494
ENSG00000175061 E054 1.970634e+01 0.0416541786 5.744020e-08 6.109294e-07 17 16463167 16463247 81 + 1.618 0.967 -2.291
ENSG00000175061 E055 8.895946e+00 0.0342188935 7.945395e-07 6.742469e-06 17 16463248 16463317 70 + 1.293 0.655 -2.405
ENSG00000175061 E056 6.132287e+00 0.1163111091 2.038787e-01 3.310444e-01 17 16463318 16463718 401 + 0.941 0.743 -0.771
ENSG00000175061 E057 1.021914e+01 0.0316128365 7.340198e-02 1.489637e-01 17 16463719 16464341 623 + 1.138 0.941 -0.719
ENSG00000175061 E058 1.973355e+01 0.0040347864 4.762508e-21 3.454222e-19 17 16470302 16470378 77 + 1.645 0.915 -2.580
ENSG00000175061 E059 7.831934e+01 0.0110168452 1.352370e-36 3.713080e-34 17 16470379 16471134 756 + 2.253 1.437 -2.754
ENSG00000175061 E060 1.746526e+02 0.0199496807 4.601633e-21 3.342659e-19 17 16471135 16473090 1956 + 2.560 1.875 -2.291
ENSG00000175061 E061 7.437457e-01 0.0153787590 2.576249e-02 6.345315e-02 17 16478422 16478678 257 + 0.450 0.091 -2.968