ENSG00000174373

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000389698 ENSG00000174373 HEK293_OSMI2_2hA HEK293_TMG_2hB RALGAPA1 protein_coding protein_coding 8.06302 2.393438 12.28113 0.04622763 0.3911648 2.354446 2.9809953 0.5964338 4.6310835 0.13880382 0.05908260 2.9360396 0.31047500 0.24830000 0.37813333 0.12983333 2.242548e-01 3.580705e-10 FALSE TRUE
ENST00000554573 ENSG00000174373 HEK293_OSMI2_2hA HEK293_TMG_2hB RALGAPA1 protein_coding protein_coding 8.06302 2.393438 12.28113 0.04622763 0.3911648 2.354446 0.9825792 1.4388414 0.2869178 0.17334051 0.28691782 -2.2867641 0.27335000 0.60226667 0.02323333 -0.57903333 3.776025e-03 3.580705e-10 FALSE TRUE
ENST00000637992 ENSG00000174373 HEK293_OSMI2_2hA HEK293_TMG_2hB RALGAPA1 protein_coding protein_coding 8.06302 2.393438 12.28113 0.04622763 0.3911648 2.354446 0.8363285 0.0000000 1.5216271 0.00000000 0.12667425 7.2589212 0.07452500 0.00000000 0.12476667 0.12476667 1.263406e-07 3.580705e-10 FALSE TRUE
ENST00000680220 ENSG00000174373 HEK293_OSMI2_2hA HEK293_TMG_2hB RALGAPA1 protein_coding protein_coding 8.06302 2.393438 12.28113 0.04622763 0.3911648 2.354446 0.2051412 0.2083983 0.2265317 0.07053992 0.15930061 0.1150721 0.03806667 0.08753333 0.01770000 -0.06983333 1.779310e-01 3.580705e-10 FALSE TRUE
MSTRG.9385.9 ENSG00000174373 HEK293_OSMI2_2hA HEK293_TMG_2hB RALGAPA1 protein_coding   8.06302 2.393438 12.28113 0.04622763 0.3911648 2.354446 1.2955662 0.0000000 1.9668726 0.00000000 0.09685219 7.6270761 0.11362500 0.00000000 0.16080000 0.16080000 3.580705e-10 3.580705e-10 TRUE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000174373 E001 0.0000000       14 35538352 35538355 4 -      
ENSG00000174373 E002 0.1482932 0.0421717434 6.117774e-02   14 35538356 35538356 1 - 0.000 0.256 12.070
ENSG00000174373 E003 45.7311446 0.0078498983 1.954791e-28 2.870869e-26 14 35538357 35539068 712 - 1.305 2.043 2.511
ENSG00000174373 E004 4.4364377 0.0052704862 1.493845e-12 3.557121e-11 14 35539069 35539159 91 - 0.252 1.234 4.355
ENSG00000174373 E005 15.4691798 0.0016427903 8.074641e-20 5.017109e-18 14 35539160 35539339 180 - 0.823 1.633 2.892
ENSG00000174373 E006 9.6979992 0.0018034248 1.601625e-09 2.286534e-08 14 35539340 35539389 50 - 0.705 1.373 2.472
ENSG00000174373 E007 14.7014868 0.0012611754 2.898322e-05 1.730580e-04 14 35539390 35539438 49 - 0.967 1.387 1.499
ENSG00000174373 E008 47.8447157 0.0016647087 5.068446e-08 5.456932e-07 14 35539439 35539634 196 - 1.483 1.822 1.151
ENSG00000174373 E009 41.2444454 0.0005738882 2.939050e-03 1.008466e-02 14 35539635 35539690 56 - 1.458 1.664 0.704
ENSG00000174373 E010 2.6869174 0.0810629453 5.248242e-02 1.135808e-01 14 35541740 35541804 65 - 0.528 0.000 -15.673
ENSG00000174373 E011 1.4799909 0.1203562544 7.422162e-01 8.311697e-01 14 35542027 35542029 3 - 0.339 0.255 -0.562
ENSG00000174373 E012 5.7418331 0.0040259133 8.441564e-01 9.029773e-01 14 35542030 35542524 495 - 0.727 0.702 -0.105
ENSG00000174373 E013 24.4395122 0.0008141175 1.665229e-01 2.836882e-01 14 35548508 35548511 4 - 1.257 1.387 0.454
ENSG00000174373 E014 27.9104955 0.0007187843 4.185080e-01 5.617677e-01 14 35548512 35548538 27 - 1.324 1.401 0.267
ENSG00000174373 E015 24.6277788 0.0009860305 8.406520e-01 9.005468e-01 14 35549110 35549173 64 - 1.282 1.309 0.094
ENSG00000174373 E016 20.1517340 0.0009448822 2.785469e-01 4.182176e-01 14 35549174 35549234 61 - 1.178 1.291 0.401
ENSG00000174373 E017 0.0000000       14 35564373 35564517 145 -      
ENSG00000174373 E018 27.5251315 0.0007348866 5.568077e-03 1.747028e-02 14 35570617 35570744 128 - 1.282 1.511 0.795
ENSG00000174373 E019 41.5297047 0.0004992390 1.701274e-03 6.287212e-03 14 35572560 35572718 159 - 1.456 1.672 0.737
ENSG00000174373 E020 0.2966881 0.0271311529 1.000000e+00   14 35572719 35572860 142 - 0.101 0.000 -12.836
ENSG00000174373 E021 50.1437576 0.0004440404 2.865341e-03 9.868744e-03 14 35595634 35595789 156 - 1.544 1.734 0.646
ENSG00000174373 E022 46.0937402 0.0018235602 1.850455e-02 4.824041e-02 14 35605586 35605709 124 - 1.514 1.679 0.563
ENSG00000174373 E023 26.8421396 0.0053327450 5.711747e-01 6.975179e-01 14 35625361 35625432 72 - 1.311 1.372 0.215
ENSG00000174373 E024 91.9907584 0.0003649581 8.912135e-01 9.345141e-01 14 35627090 35627951 862 - 1.840 1.842 0.008
ENSG00000174373 E025 36.1809942 0.0005652862 8.023528e-01 8.740765e-01 14 35634574 35634757 184 - 1.438 1.466 0.097
ENSG00000174373 E026 33.8499649 0.0006553890 9.441978e-01 9.690220e-01 14 35635464 35635598 135 - 1.412 1.415 0.011
ENSG00000174373 E027 36.5014860 0.0006033049 1.209412e-01 2.212931e-01 14 35651805 35651873 69 - 1.462 1.342 -0.416
ENSG00000174373 E028 35.0847846 0.0005854382 4.671925e-02 1.033250e-01 14 35654367 35654477 111 - 1.454 1.291 -0.566
ENSG00000174373 E029 21.7458586 0.0008738597 7.048770e-01 8.033354e-01 14 35655807 35655915 109 - 1.228 1.273 0.159
ENSG00000174373 E030 17.5431496 0.0063122779 4.986758e-01 6.351144e-01 14 35659138 35659196 59 - 1.130 1.213 0.296
ENSG00000174373 E031 18.2674633 0.0009667925 7.886703e-01 8.647107e-01 14 35664642 35664767 126 - 1.154 1.191 0.130
ENSG00000174373 E032 14.2450122 0.0168561305 7.729111e-01 8.534457e-01 14 35671389 35671517 129 - 1.061 1.031 -0.107
ENSG00000174373 E033 20.0207165 0.0009299256 3.743646e-02 8.628746e-02 14 35672867 35673022 156 - 1.228 0.994 -0.841
ENSG00000174373 E034 19.6403795 0.0009209965 8.955190e-02 1.744382e-01 14 35674180 35674223 44 - 1.214 1.029 -0.667
ENSG00000174373 E035 21.9527099 0.0008890984 9.610559e-02 1.845252e-01 14 35674224 35674278 55 - 1.260 1.090 -0.608
ENSG00000174373 E036 29.1673770 0.0006654227 1.017741e-02 2.920137e-02 14 35674516 35674709 194 - 1.387 1.143 -0.858
ENSG00000174373 E037 0.2934659 0.0296356798 1.945745e-01   14 35676229 35677949 1721 - 0.054 0.256 2.616
ENSG00000174373 E038 28.7606705 0.0010080877 1.517588e-04 7.547779e-04 14 35677950 35678102 153 - 1.396 0.994 -1.431
ENSG00000174373 E039 0.1451727 0.0427711769 9.828097e-01   14 35683446 35683808 363 - 0.054 0.000 -11.873
ENSG00000174373 E040 33.1330998 0.0052874936 4.189678e-03 1.367755e-02 14 35683809 35683985 177 - 1.446 1.167 -0.975
ENSG00000174373 E041 33.4183440 0.0176129069 3.113949e-02 7.417216e-02 14 35684929 35685145 217 - 1.445 1.210 -0.819
ENSG00000174373 E042 20.9028784 0.0009011613 4.017799e-02 9.136916e-02 14 35686542 35686623 82 - 1.251 1.028 -0.797
ENSG00000174373 E043 15.1589769 0.0012095203 7.171651e-01 8.126273e-01 14 35686624 35686666 43 - 1.094 1.060 -0.124
ENSG00000174373 E044 9.9095310 0.0017612815 7.995229e-01 8.721101e-01 14 35688459 35688540 82 - 0.915 0.957 0.158
ENSG00000174373 E045 31.5215441 0.0006835364 3.586236e-01 5.030201e-01 14 35688541 35689533 993 - 1.396 1.326 -0.246
ENSG00000174373 E046 12.1130200 0.0057302034 1.463142e-01 2.566601e-01 14 35689534 35689835 302 - 1.025 0.823 -0.762
ENSG00000174373 E047 29.9964806 0.0173068211 4.596633e-03 1.481084e-02 14 35689836 35690003 168 - 1.405 1.063 -1.208
ENSG00000174373 E048 0.7416694 0.0206113233 7.179685e-01 8.132215e-01 14 35700162 35700302 141 - 0.183 0.257 0.616
ENSG00000174373 E049 5.0587839 0.0034243460 2.588102e-02 6.369871e-02 14 35706634 35707583 950 - 0.727 0.257 -2.426
ENSG00000174373 E050 19.7439284 0.0084184894 6.080726e-04 2.562622e-03 14 35721688 35721849 162 - 1.244 0.767 -1.772
ENSG00000174373 E051 28.4227710 0.0007038083 4.496551e-10 7.104145e-09 14 35723027 35723264 238 - 1.412 0.534 -3.359
ENSG00000174373 E052 0.4375944 0.0246048440 1.000000e+00 1.000000e+00 14 35723265 35723876 612 - 0.144 0.000 -13.387
ENSG00000174373 E053 23.7786616 0.0007970630 1.120929e-05 7.362503e-05 14 35725024 35725153 130 - 1.324 0.766 -2.054
ENSG00000174373 E054 0.1515154 0.0431548924 1.000000e+00   14 35728341 35728361 21 - 0.054 0.000 -11.873
ENSG00000174373 E055 19.7953185 0.0033322717 3.495602e-03 1.171262e-02 14 35728362 35728510 149 - 1.238 0.872 -1.335
ENSG00000174373 E056 16.4135378 0.0011378308 2.109709e-04 1.010794e-03 14 35738513 35738650 138 - 1.174 0.626 -2.110
ENSG00000174373 E057 12.2957704 0.0830902735 2.481293e-01 3.837178e-01 14 35742368 35742565 198 - 1.025 0.832 -0.727
ENSG00000174373 E058 0.1515154 0.0431548924 1.000000e+00   14 35748400 35748584 185 - 0.054 0.000 -11.873
ENSG00000174373 E059 21.0817347 0.0009379040 8.724532e-02 1.709608e-01 14 35748585 35748791 207 - 1.241 1.060 -0.647
ENSG00000174373 E060 16.8416744 0.0062641186 3.272279e-01 4.706766e-01 14 35748792 35748824 33 - 1.142 1.029 -0.407
ENSG00000174373 E061 29.2061557 0.0007109441 1.193784e-01 2.190570e-01 14 35750482 35750690 209 - 1.370 1.234 -0.477
ENSG00000174373 E062 20.1020732 0.0014060941 3.818492e-02 8.770209e-02 14 35752024 35752162 139 - 1.228 0.995 -0.840
ENSG00000174373 E063 22.2905523 0.0008450991 4.217568e-03 1.375130e-02 14 35756793 35756908 116 - 1.282 0.957 -1.168
ENSG00000174373 E064 33.4949633 0.0005793204 5.252503e-05 2.943735e-04 14 35760829 35761006 178 - 1.458 1.060 -1.403
ENSG00000174373 E065 19.8132920 0.0021177696 1.362396e-05 8.771216e-05 14 35762710 35762753 44 - 1.254 0.626 -2.393
ENSG00000174373 E066 19.7530635 0.0008934439 9.393419e-04 3.751724e-03 14 35770942 35770999 58 - 1.241 0.822 -1.540
ENSG00000174373 E067 15.7033796 0.0013925736 1.608165e-03 5.987619e-03 14 35775006 35775055 50 - 1.150 0.702 -1.704
ENSG00000174373 E068 18.0163028 0.0090282881 1.876863e-03 6.843335e-03 14 35775635 35775745 111 - 1.204 0.767 -1.629
ENSG00000174373 E069 0.5975289 0.0322189910 6.854913e-01 7.882075e-01 14 35807805 35807897 93 - 0.183 0.000 -13.777
ENSG00000174373 E070 29.5696086 0.0011072201 4.398184e-03 1.425921e-02 14 35808730 35809304 575 - 1.394 1.117 -0.975