ENSG00000173898

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000528051 ENSG00000173898 HEK293_OSMI2_2hA HEK293_TMG_2hB SPTBN2 protein_coding retained_intron 21.86076 33.89221 17.91549 2.267384 1.195653 -0.9193667 2.949829 7.6127197 0.1400929 1.5755018 0.1400929 -5.666379 0.09500000 0.22240000 0.0069000 -0.21550000 2.535281e-03 4.232667e-27 FALSE TRUE
ENST00000530665 ENSG00000173898 HEK293_OSMI2_2hA HEK293_TMG_2hB SPTBN2 protein_coding retained_intron 21.86076 33.89221 17.91549 2.267384 1.195653 -0.9193667 1.667280 0.4343653 3.9101392 0.2461510 0.4167677 3.141087 0.09648333 0.01246667 0.2171667 0.20470000 2.368549e-03 4.232667e-27 FALSE FALSE
ENST00000532650 ENSG00000173898 HEK293_OSMI2_2hA HEK293_TMG_2hB SPTBN2 protein_coding retained_intron 21.86076 33.89221 17.91549 2.267384 1.195653 -0.9193667 3.195214 5.5431232 2.0135544 1.3807880 0.3949874 -1.456408 0.12586250 0.15970000 0.1107000 -0.04900000 5.610872e-01 4.232667e-27 FALSE FALSE
ENST00000532902 ENSG00000173898 HEK293_OSMI2_2hA HEK293_TMG_2hB SPTBN2 protein_coding retained_intron 21.86076 33.89221 17.91549 2.267384 1.195653 -0.9193667 1.435308 3.4162355 0.0000000 0.1883572 0.0000000 -8.420480 0.05217500 0.10153333 0.0000000 -0.10153333 4.232667e-27 4.232667e-27 FALSE FALSE
ENST00000533211 ENSG00000173898 HEK293_OSMI2_2hA HEK293_TMG_2hB SPTBN2 protein_coding protein_coding 21.86076 33.89221 17.91549 2.267384 1.195653 -0.9193667 1.884601 3.1005571 1.1831106 0.1289932 0.1317194 -1.382445 0.08957083 0.09190000 0.0675000 -0.02440000 3.837395e-01 4.232667e-27 FALSE TRUE
MSTRG.5798.15 ENSG00000173898 HEK293_OSMI2_2hA HEK293_TMG_2hB SPTBN2 protein_coding   21.86076 33.89221 17.91549 2.267384 1.195653 -0.9193667 6.229810 10.4526019 4.8643652 1.1375245 0.4803490 -1.101955 0.29395833 0.31256667 0.2737000 -0.03886667 8.141199e-01 4.232667e-27 FALSE TRUE
MSTRG.5798.16 ENSG00000173898 HEK293_OSMI2_2hA HEK293_TMG_2hB SPTBN2 protein_coding   21.86076 33.89221 17.91549 2.267384 1.195653 -0.9193667 1.132162 0.6974438 2.7768200 0.4058934 0.6138670 1.977932 0.06511250 0.02186667 0.1552000 0.13333333 1.479000e-02 4.232667e-27 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000173898 E001 0.6643356 0.7258366027 5.031204e-01 6.391041e-01 11 66655032 66655067 36 - 0.000 0.255 9.663
ENSG00000173898 E002 16.0924306 0.0025646023 8.932627e-02 1.741029e-01 11 66682497 66682634 138 - 1.093 1.247 0.550
ENSG00000173898 E003 22.6748905 0.0159496419 1.047688e-01 1.977654e-01 11 66682635 66682684 50 - 1.224 1.385 0.561
ENSG00000173898 E004 18.2767082 0.0119243550 1.128660e-01 2.097315e-01 11 66682685 66682695 11 - 1.137 1.294 0.556
ENSG00000173898 E005 20.4364975 0.0071700024 4.580657e-02 1.016781e-01 11 66682696 66682723 28 - 1.164 1.344 0.636
ENSG00000173898 E006 29.2559225 0.0006821363 1.868527e-01 3.097838e-01 11 66682724 66682844 121 - 1.384 1.470 0.298
ENSG00000173898 E007 53.8735464 0.0059269348 2.367081e-01 3.703730e-01 11 66682845 66683364 520 - 1.660 1.731 0.241
ENSG00000173898 E008 27.8488588 0.0007166356 2.226748e-01 3.535782e-01 11 66683365 66683440 76 - 1.488 1.401 -0.301
ENSG00000173898 E009 57.5412379 0.0161129940 2.039402e-01 3.311209e-01 11 66683441 66683636 196 - 1.667 1.761 0.319
ENSG00000173898 E010 59.4110769 0.0235320129 3.991474e-01 5.428805e-01 11 66683637 66683795 159 - 1.695 1.769 0.250
ENSG00000173898 E011 125.2588929 0.0045715416 4.150856e-01 5.585074e-01 11 66683796 66684661 866 - 2.092 2.053 -0.132
ENSG00000173898 E012 65.7207703 0.0004219107 4.511015e-03 1.457439e-02 11 66684662 66685251 590 - 1.878 1.745 -0.446
ENSG00000173898 E013 25.5342501 0.0039059561 6.680570e-01 7.751361e-01 11 66685252 66685310 59 - 1.376 1.405 0.098
ENSG00000173898 E014 17.6743654 0.0311462637 2.091981e-01 3.375574e-01 11 66685311 66685319 9 - 1.136 1.291 0.545
ENSG00000173898 E015 246.2375888 0.0198548052 2.216036e-06 1.706730e-05 11 66685320 66685651 332 - 2.093 2.444 1.171
ENSG00000173898 E016 98.3892878 0.0309431579 2.341999e-05 1.429166e-04 11 66685652 66685654 3 - 1.644 2.058 1.396
ENSG00000173898 E017 278.4593802 0.0112951273 6.017499e-07 5.241125e-06 11 66685655 66685870 216 - 2.198 2.485 0.956
ENSG00000173898 E018 250.1459363 0.0051842272 3.599189e-08 3.989559e-07 11 66685871 66686104 234 - 2.191 2.428 0.792
ENSG00000173898 E019 3.9608811 0.0688163128 2.067523e-01 3.346657e-01 11 66686105 66686397 293 - 0.797 0.570 -0.957
ENSG00000173898 E020 128.2048261 0.0024781855 8.570275e-06 5.783127e-05 11 66686398 66686440 43 - 1.941 2.126 0.621
ENSG00000173898 E021 1.3211111 0.0097907408 9.242695e-01 9.563033e-01 11 66686441 66686517 77 - 0.364 0.344 -0.120
ENSG00000173898 E022 1.1865370 0.0127568411 2.639165e-02 6.473178e-02 11 66686793 66686993 201 - 0.560 0.171 -2.444
ENSG00000173898 E023 227.0551812 0.0004592523 8.777720e-15 2.913302e-13 11 66686994 66687167 174 - 2.164 2.378 0.714
ENSG00000173898 E024 262.1273804 0.0001963257 4.308541e-17 1.935136e-15 11 66687427 66687611 185 - 2.233 2.439 0.688
ENSG00000173898 E025 138.8331599 0.0002217603 2.534484e-09 3.486678e-08 11 66687612 66687647 36 - 1.964 2.162 0.662
ENSG00000173898 E026 161.4001406 0.0002075371 3.202507e-09 4.322495e-08 11 66687868 66687918 51 - 2.042 2.223 0.606
ENSG00000173898 E027 174.1857826 0.0019369417 7.686572e-05 4.132348e-04 11 66688004 66688079 76 - 2.109 2.248 0.465
ENSG00000173898 E028 223.0345772 0.0020067861 1.111866e-02 3.144909e-02 11 66688169 66688311 143 - 2.259 2.340 0.270
ENSG00000173898 E029 229.0320621 0.0009379685 3.083429e-03 1.051152e-02 11 66688653 66688820 168 - 2.270 2.351 0.271
ENSG00000173898 E030 128.1611949 0.0019687188 2.500789e-03 8.765186e-03 11 66688821 66688849 29 - 1.994 2.111 0.393
ENSG00000173898 E031 2.7515461 0.0877011513 1.868083e-02 4.863304e-02 11 66688850 66688917 68 - 0.797 0.346 -2.112
ENSG00000173898 E032 176.7091281 0.0044487432 3.191392e-03 1.083027e-02 11 66689096 66689180 85 - 2.126 2.252 0.420
ENSG00000173898 E033 188.1235027 0.0002349358 3.983085e-03 1.309541e-02 11 66689805 66689943 139 - 2.186 2.262 0.256
ENSG00000173898 E034 213.6550580 0.0022293568 5.095228e-02 1.108607e-01 11 66690039 66690283 245 - 2.249 2.314 0.216
ENSG00000173898 E035 1.3651183 0.0098998026 9.242753e-01 9.563040e-01 11 66690284 66690358 75 - 0.364 0.344 -0.120
ENSG00000173898 E036 239.5233357 0.0008782510 5.017668e-01 6.379111e-01 11 66691284 66691658 375 - 2.334 2.349 0.049
ENSG00000173898 E037 185.1395263 0.0003129172 3.037446e-01 4.457074e-01 11 66692536 66692740 205 - 2.216 2.240 0.081
ENSG00000173898 E038 166.7951320 0.0002337157 3.346629e-01 4.784034e-01 11 66692970 66693100 131 - 2.171 2.194 0.078
ENSG00000173898 E039 211.7046621 0.0037841093 8.974203e-01 9.384927e-01 11 66693186 66693446 261 - 2.289 2.293 0.013
ENSG00000173898 E040 102.2862184 0.0036883444 9.796487e-01 9.913229e-01 11 66693772 66693861 90 - 1.978 1.977 -0.005
ENSG00000173898 E041 165.0776847 0.0046517291 8.290967e-01 8.926504e-01 11 66694139 66694334 196 - 2.180 2.187 0.026
ENSG00000173898 E042 70.8112894 0.0026871438 4.794791e-01 6.178532e-01 11 66694335 66694363 29 - 1.846 1.807 -0.134
ENSG00000173898 E043 100.2310292 0.0052530923 4.906519e-02 1.074931e-01 11 66696277 66696328 52 - 2.040 1.936 -0.350
ENSG00000173898 E044 177.5441580 0.0013131665 2.922502e-03 1.003751e-02 11 66696329 66696540 212 - 2.284 2.185 -0.333
ENSG00000173898 E045 1.1373304 0.0112306528 7.062731e-01 8.044425e-01 11 66696928 66697003 76 - 0.364 0.294 -0.442
ENSG00000173898 E046 138.8436524 0.0015167197 1.181380e-04 6.052921e-04 11 66698639 66698785 147 - 2.204 2.063 -0.471
ENSG00000173898 E047 1.5562754 0.0142330260 1.295340e-01 2.335133e-01 11 66698786 66698807 22 - 0.560 0.294 -1.444
ENSG00000173898 E048 118.4985047 0.0017416398 6.193366e-03 1.912369e-02 11 66698992 66699082 91 - 2.118 2.008 -0.367
ENSG00000173898 E049 161.8405127 0.0048233361 4.508542e-02 1.003548e-01 11 66699406 66699608 203 - 2.236 2.148 -0.295
ENSG00000173898 E050 320.1041704 0.0048730468 1.987008e-03 7.185888e-03 11 66700526 66701282 757 - 2.549 2.432 -0.390
ENSG00000173898 E051 106.3709111 0.0056742702 2.317539e-06 1.777893e-05 11 66701584 66701721 138 - 2.144 1.908 -0.793
ENSG00000173898 E052 273.0644491 0.0097025746 2.500427e-04 1.175414e-03 11 66704598 66705468 871 - 2.520 2.337 -0.611
ENSG00000173898 E053 86.6793812 0.0061331979 1.134544e-04 5.837005e-04 11 66705684 66705837 154 - 2.036 1.828 -0.701
ENSG00000173898 E054 144.5894210 0.0029341521 1.576886e-07 1.541626e-06 11 66707516 66707818 303 - 2.258 2.049 -0.697
ENSG00000173898 E055 109.1509775 0.0045562506 4.524547e-06 3.253604e-05 11 66708141 66708299 159 - 2.143 1.926 -0.727
ENSG00000173898 E056 91.9281791 0.0092217798 6.133374e-04 2.582078e-03 11 66708902 66709019 118 - 2.060 1.858 -0.679
ENSG00000173898 E057 119.5316557 0.0050549544 1.214912e-05 7.914494e-05 11 66710582 66710769 188 - 2.176 1.969 -0.692
ENSG00000173898 E058 98.7942423 0.0051381249 6.696654e-05 3.654715e-04 11 66710917 66711029 113 - 2.091 1.892 -0.668
ENSG00000173898 E059 107.9561382 0.0026369415 8.805973e-12 1.851365e-10 11 66713631 66713746 116 - 2.176 1.888 -0.967
ENSG00000173898 E060 98.3358900 0.0080196833 8.320664e-09 1.040948e-07 11 66714091 66714171 81 - 2.153 1.831 -1.079
ENSG00000173898 E061 98.1515646 0.0098249616 1.660796e-09 2.363172e-08 11 66714316 66714407 92 - 2.171 1.813 -1.200
ENSG00000173898 E062 115.5664057 0.0030653499 4.551401e-16 1.796727e-14 11 66715222 66715395 174 - 2.235 1.890 -1.156
ENSG00000173898 E063 82.0164451 0.0143252473 4.111727e-05 2.363691e-04 11 66715830 66715981 152 - 2.060 1.773 -0.966
ENSG00000173898 E064 0.6589510 0.0202718494 6.501983e-01 7.612798e-01 11 66718443 66718872 430 - 0.158 0.237 0.727
ENSG00000173898 E065 68.9959473 0.0146160373 8.720589e-06 5.873887e-05 11 66721084 66721262 179 - 2.002 1.684 -1.073
ENSG00000173898 E066 21.5229025 0.0114375698 3.263908e-05 1.924726e-04 11 66721350 66721440 91 - 1.535 1.164 -1.293
ENSG00000173898 E067 5.6692628 0.0807769170 1.347458e-01 2.407317e-01 11 66721441 66721532 92 - 0.949 0.693 -1.004
ENSG00000173898 E068 4.1483747 0.0849767193 3.053057e-01 4.473710e-01 11 66725479 66725625 147 - 0.796 0.620 -0.729
ENSG00000173898 E069 2.8284110 0.1448034427 4.428199e-02 9.889962e-02 11 66727304 66727412 109 - 0.796 0.389 -1.856
ENSG00000173898 E070 4.4879241 0.0109388810 2.113689e-01 3.401043e-01 11 66727986 66728160 175 - 0.826 0.642 -0.748
ENSG00000173898 E071 6.4680853 0.0138842938 6.680597e-01 7.751361e-01 11 66728161 66728372 212 - 0.879 0.818 -0.235
ENSG00000173898 E072 1.2544896 0.1111046610 7.294828e-01 8.216603e-01 11 66728741 66729192 452 - 0.364 0.297 -0.419
ENSG00000173898 E073 0.0000000       11 66729193 66729226 34 -      
ENSG00000173898 E074 10.7572794 0.0054408270 1.573841e-04 7.800935e-04 11 66744542 66744670 129 - 0.654 1.134 1.847