ENSG00000173230

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000393667 ENSG00000173230 HEK293_OSMI2_2hA HEK293_TMG_2hB GOLGB1 protein_coding protein_coding 11.55965 8.642772 11.79269 0.2246997 0.6539397 0.4478814 0.5050594 0.00000000 0.7276284 0.00000000 0.4694113 6.204822 0.04444167 0.00000000 0.06346667 0.06346667 2.467273e-01 1.048371e-10 FALSE TRUE
ENST00000494517 ENSG00000173230 HEK293_OSMI2_2hA HEK293_TMG_2hB GOLGB1 protein_coding protein_coding 11.55965 8.642772 11.79269 0.2246997 0.6539397 0.4478814 2.3822316 0.16823142 3.2730465 0.16823142 0.1065596 4.203212 0.19308333 0.02020000 0.27833333 0.25813333 1.323726e-02 1.048371e-10 FALSE TRUE
ENST00000614479 ENSG00000173230 HEK293_OSMI2_2hA HEK293_TMG_2hB GOLGB1 protein_coding protein_coding 11.55965 8.642772 11.79269 0.2246997 0.6539397 0.4478814 0.4085518 0.04420441 1.7984314 0.04420441 0.2752778 5.060185 0.03529167 0.00520000 0.15170000 0.14650000 1.046942e-06 1.048371e-10 FALSE TRUE
ENST00000694981 ENSG00000173230 HEK293_OSMI2_2hA HEK293_TMG_2hB GOLGB1 protein_coding retained_intron 11.55965 8.642772 11.79269 0.2246997 0.6539397 0.4478814 0.7496613 1.10778069 0.1819961 0.31112690 0.1297715 -2.541488 0.06989167 0.13000000 0.01563333 -0.11436667 4.359222e-02 1.048371e-10 TRUE TRUE
ENST00000695005 ENSG00000173230 HEK293_OSMI2_2hA HEK293_TMG_2hB GOLGB1 protein_coding retained_intron 11.55965 8.642772 11.79269 0.2246997 0.6539397 0.4478814 0.5115640 0.83652940 0.2448449 0.09755511 0.1239948 -1.731941 0.04550417 0.09636667 0.02003333 -0.07633333 9.652109e-02 1.048371e-10 FALSE TRUE
ENST00000695039 ENSG00000173230 HEK293_OSMI2_2hA HEK293_TMG_2hB GOLGB1 protein_coding retained_intron 11.55965 8.642772 11.79269 0.2246997 0.6539397 0.4478814 1.3478189 1.52649204 0.6437674 0.11011291 0.1329645 -1.232791 0.11684583 0.17623333 0.05576667 -0.12046667 2.364697e-04 1.048371e-10 FALSE TRUE
ENST00000695107 ENSG00000173230 HEK293_OSMI2_2hA HEK293_TMG_2hB GOLGB1 protein_coding nonsense_mediated_decay 11.55965 8.642772 11.79269 0.2246997 0.6539397 0.4478814 0.3869461 0.76920413 0.0000000 0.15672757 0.0000000 -6.283929 0.03995833 0.08910000 0.00000000 -0.08910000 1.048371e-10 1.048371e-10 FALSE TRUE
ENST00000695118 ENSG00000173230 HEK293_OSMI2_2hA HEK293_TMG_2hB GOLGB1 protein_coding protein_coding 11.55965 8.642772 11.79269 0.2246997 0.6539397 0.4478814 1.7263449 2.67614397 1.1226350 0.23312725 0.4075067 -1.245854 0.15683333 0.31063333 0.09253333 -0.21810000 3.642038e-03 1.048371e-10 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000173230 E001 0.0000000       3 121663199 121663200 2 -      
ENSG00000173230 E002 0.4782907 0.0231445232 1.456069e-02 3.949944e-02 3 121663201 121663202 2 - 0.000 0.393 11.784
ENSG00000173230 E003 0.4782907 0.0231445232 1.456069e-02 3.949944e-02 3 121663203 121663203 1 - 0.000 0.393 14.606
ENSG00000173230 E004 0.6599951 0.0188429110 3.952011e-03 1.300792e-02 3 121663204 121663220 17 - 0.000 0.472 15.044
ENSG00000173230 E005 1.8435253 0.0983230298 4.654609e-01 6.051758e-01 3 121663221 121663233 13 - 0.399 0.535 0.692
ENSG00000173230 E006 10.7205396 0.0465358199 5.483021e-02 1.177071e-01 3 121663234 121663253 20 - 0.942 1.216 0.995
ENSG00000173230 E007 19.3899658 0.0302608257 5.260143e-02 1.137890e-01 3 121663254 121663343 90 - 1.206 1.420 0.751
ENSG00000173230 E008 18.0837647 0.0607005204 2.375386e-01 3.713008e-01 3 121663344 121663378 35 - 1.188 1.366 0.626
ENSG00000173230 E009 14.2956038 0.0440866462 3.514723e-01 4.957072e-01 3 121663379 121663389 11 - 1.116 1.238 0.433
ENSG00000173230 E010 15.2877641 0.0207555719 3.769513e-01 5.212804e-01 3 121663390 121663401 12 - 1.157 1.249 0.326
ENSG00000173230 E011 18.3877521 0.0115784901 4.723294e-02 1.042469e-01 3 121663402 121663420 19 - 1.194 1.374 0.632
ENSG00000173230 E012 107.9846861 0.0032986424 6.931644e-15 2.341143e-13 3 121663421 121664097 677 - 1.869 2.197 1.101
ENSG00000173230 E013 13.6531307 0.0465472527 2.307064e-02 5.789593e-02 3 121664098 121664100 3 - 1.011 1.311 1.072
ENSG00000173230 E014 14.1272568 0.0304665034 1.307950e-02 3.609533e-02 3 121664101 121664108 8 - 1.029 1.320 1.039
ENSG00000173230 E015 17.1059330 0.0128932112 2.379019e-04 1.124569e-03 3 121664109 121664135 27 - 1.078 1.427 1.229
ENSG00000173230 E016 25.7159897 0.0008061878 9.696521e-11 1.714557e-09 3 121664136 121664146 11 - 1.200 1.637 1.514
ENSG00000173230 E017 38.0807101 0.0010798764 4.096178e-16 1.626852e-14 3 121664147 121664191 45 - 1.352 1.816 1.585
ENSG00000173230 E018 36.4752857 0.0101039081 5.183879e-09 6.744062e-08 3 121664192 121664206 15 - 1.356 1.787 1.471
ENSG00000173230 E019 180.4373829 0.0146816146 8.195163e-10 1.234435e-08 3 121664207 121664614 408 - 2.068 2.446 1.261
ENSG00000173230 E020 0.4772466 0.0206514639 1.965630e-01 3.219382e-01 3 121664615 121664925 311 - 0.085 0.298 2.195
ENSG00000173230 E021 69.2920774 0.0168888996 8.499638e-06 5.739346e-05 3 121664926 121665031 106 - 1.682 2.015 1.122
ENSG00000173230 E022 7.1081307 0.1610049487 4.284730e-01 5.712259e-01 3 121665032 121667475 2444 - 0.833 0.986 0.579
ENSG00000173230 E023 76.3869309 0.0006291138 3.915311e-15 1.369036e-13 3 121667476 121667610 135 - 1.730 2.048 1.073
ENSG00000173230 E024 1.4705382 0.0691015578 8.399007e-01 9.000219e-01 3 121667611 121668060 450 - 0.360 0.396 0.206
ENSG00000173230 E025 69.6122104 0.0003566480 1.623415e-15 5.973026e-14 3 121668061 121668158 98 - 1.680 2.013 1.121
ENSG00000173230 E026 0.1817044 0.0394865783 2.081671e-01   3 121668159 121668313 155 - 0.000 0.174 12.926
ENSG00000173230 E027 4.9695363 0.0084491436 2.162802e-03 7.728980e-03 3 121668314 121668508 195 - 0.554 0.973 1.702
ENSG00000173230 E028 0.4772466 0.0206514639 1.965630e-01 3.219382e-01 3 121668509 121668669 161 - 0.085 0.298 2.195
ENSG00000173230 E029 3.3266327 0.0184031980 2.815648e-02 6.832405e-02 3 121668670 121669196 527 - 0.468 0.808 1.486
ENSG00000173230 E030 9.8556800 0.0017819511 2.222909e-04 1.059136e-03 3 121669197 121669211 15 - 0.846 1.224 1.388
ENSG00000173230 E031 83.3883671 0.0003049196 3.217504e-11 6.165131e-10 3 121669212 121669355 144 - 1.797 2.051 0.852
ENSG00000173230 E032 3.8072058 0.0952378120 9.322678e-01 9.613324e-01 3 121669356 121675037 5682 - 0.669 0.650 -0.078
ENSG00000173230 E033 96.2898941 0.0007702881 1.290353e-08 1.558418e-07 3 121676893 121677030 138 - 1.875 2.086 0.709
ENSG00000173230 E034 81.4291529 0.0006148102 1.407152e-05 9.030911e-05 3 121677285 121677450 166 - 1.825 1.996 0.576
ENSG00000173230 E035 0.3729606 0.0295531150 5.362800e-01 6.680386e-01 3 121680571 121680635 65 - 0.085 0.174 1.199
ENSG00000173230 E036 67.9902648 0.0004032562 5.918605e-05 3.274258e-04 3 121681687 121681834 148 - 1.745 1.916 0.574
ENSG00000173230 E037 41.8057775 0.0078172841 5.308754e-02 1.146390e-01 3 121681835 121681865 31 - 1.555 1.683 0.437
ENSG00000173230 E038 5.1056286 0.0072448207 3.838263e-01 5.280319e-01 3 121681866 121682916 1051 - 0.724 0.839 0.458
ENSG00000173230 E039 2.0808663 0.0617924246 6.270271e-01 7.428918e-01 3 121682917 121682961 45 - 0.499 0.396 -0.535
ENSG00000173230 E040 1.2274368 0.0131864682 2.470913e-01 3.825123e-01 3 121682962 121682963 2 - 0.399 0.174 -1.612
ENSG00000173230 E041 1.1480412 0.0229794290 9.365672e-01 9.640987e-01 3 121682964 121683313 350 - 0.317 0.298 -0.124
ENSG00000173230 E042 1.0392880 0.0125541186 9.305838e-01 9.603347e-01 3 121690424 121690669 246 - 0.317 0.297 -0.128
ENSG00000173230 E043 178.4083798 0.0013620565 9.207447e-03 2.680316e-02 3 121690670 121691332 663 - 2.202 2.278 0.255
ENSG00000173230 E044 232.6649657 0.0091451516 8.993691e-01 9.397914e-01 3 121691333 121692581 1249 - 2.346 2.343 -0.010
ENSG00000173230 E045 312.9577523 0.0045049633 2.981297e-05 1.775368e-04 3 121693741 121695595 1855 - 2.521 2.366 -0.516
ENSG00000173230 E046 239.3592813 0.0274815814 4.250176e-06 3.071694e-05 3 121695596 121697455 1860 - 2.452 2.091 -1.208
ENSG00000173230 E047 22.9976606 0.0008041908 1.343964e-08 1.617804e-07 3 121697456 121697562 107 - 1.477 0.949 -1.881
ENSG00000173230 E048 28.7016685 0.0006795542 5.299270e-13 1.358315e-11 3 121697563 121697690 128 - 1.584 0.949 -2.247
ENSG00000173230 E049 34.8483632 0.0011706574 1.602533e-13 4.428166e-12 3 121697691 121697899 209 - 1.662 1.073 -2.052
ENSG00000173230 E050 21.2796445 0.0014947787 1.394179e-04 7.010406e-04 3 121697900 121697967 68 - 1.418 1.073 -1.215
ENSG00000173230 E051 87.9912431 0.0003333561 1.400634e-23 1.321444e-21 3 121697968 121698627 660 - 2.040 1.556 -1.634
ENSG00000173230 E052 24.4817337 0.0042047277 8.740730e-09 1.089268e-07 3 121698628 121698700 73 - 1.508 0.949 -1.983
ENSG00000173230 E053 22.2051147 0.0008559705 4.679536e-08 5.078039e-07 3 121698701 121698784 84 - 1.462 0.949 -1.826
ENSG00000173230 E054 19.4188457 0.0010400309 8.433015e-08 8.685964e-07 3 121698785 121698883 99 - 1.410 0.870 -1.949
ENSG00000173230 E055 14.1568280 0.0015412923 1.087592e-05 7.165648e-05 3 121698884 121698929 46 - 1.275 0.773 -1.857
ENSG00000173230 E056 16.9550093 0.0011082906 1.742904e-04 8.538827e-04 3 121699812 121699885 74 - 1.327 0.949 -1.358
ENSG00000173230 E057 0.0000000       3 121699886 121700118 233 -      
ENSG00000173230 E058 0.0000000       3 121701753 121702480 728 -      
ENSG00000173230 E059 27.7920232 0.0006795512 1.150182e-11 2.370008e-10 3 121702481 121702591 111 - 1.567 0.972 -2.100
ENSG00000173230 E060 17.2879846 0.0010622315 1.472655e-10 2.526627e-09 3 121702592 121702595 4 - 1.388 0.648 -2.765
ENSG00000173230 E061 0.0000000       3 121702596 121703013 418 -      
ENSG00000173230 E062 0.5890081 0.0416197133 4.207089e-01 5.638989e-01 3 121712201 121714860 2660 - 0.155 0.297 1.189
ENSG00000173230 E063 27.2913683 0.0008179054 1.428522e-12 3.410577e-11 3 121714861 121714971 111 - 1.565 0.924 -2.272
ENSG00000173230 E064 12.4929191 0.0014397409 5.983523e-08 6.346212e-07 3 121714972 121714976 5 - 1.250 0.539 -2.767
ENSG00000173230 E065 47.0296811 0.0038794396 6.393947e-16 2.478138e-14 3 121716737 121717139 403 - 1.790 1.171 -2.134
ENSG00000173230 E066 22.1374116 0.0109570696 4.062167e-09 5.380072e-08 3 121718388 121718501 114 - 1.480 0.808 -2.428
ENSG00000173230 E067 3.2849980 0.0047984701 2.561414e-03 8.946557e-03 3 121718502 121718848 347 - 0.742 0.174 -3.196
ENSG00000173230 E068 1.9574529 0.0071499875 4.965128e-02 1.085426e-01 3 121718849 121718914 66 - 0.554 0.174 -2.389
ENSG00000173230 E069 1.3371220 0.0108765849 1.800071e-01 3.011863e-01 3 121718915 121719178 264 - 0.435 0.174 -1.805
ENSG00000173230 E070 3.4534772 0.0097224745 6.097222e-02 1.282718e-01 3 121719179 121719645 467 - 0.724 0.394 -1.543
ENSG00000173230 E071 13.5666740 0.0079685749 2.450544e-05 1.489885e-04 3 121719646 121719750 105 - 1.260 0.736 -1.954
ENSG00000173230 E072 4.2731047 0.0042083207 1.541707e-02 4.143751e-02 3 121719751 121719753 3 - 0.804 0.394 -1.862
ENSG00000173230 E073 4.8663672 0.0032736299 5.040603e-03 1.604138e-02 3 121719754 121719768 15 - 0.859 0.394 -2.076
ENSG00000173230 E074 12.5361748 0.0019570117 6.617160e-10 1.015226e-08 3 121719769 121722261 2493 - 1.265 0.394 -3.559
ENSG00000173230 E075 18.6982301 0.0293956859 4.328496e-05 2.475833e-04 3 121722262 121722376 115 - 1.395 0.843 -2.000
ENSG00000173230 E076 9.8081917 0.0202101196 9.334670e-05 4.907381e-04 3 121722377 121722378 2 - 1.143 0.540 -2.385
ENSG00000173230 E077 19.7325877 0.0024314306 1.842680e-08 2.163827e-07 3 121726913 121727041 129 - 1.425 0.840 -2.114
ENSG00000173230 E078 0.0000000       3 121727319 121727341 23 -      
ENSG00000173230 E079 0.0000000       3 121727342 121729187 1846 -      
ENSG00000173230 E080 16.2944045 0.0224149235 1.656125e-05 1.046524e-04 3 121729188 121729336 149 - 1.348 0.770 -2.122
ENSG00000173230 E081 6.6506737 0.0051033077 3.892157e-03 1.284187e-02 3 121729337 121729340 4 - 0.972 0.539 -1.768
ENSG00000173230 E082 23.5341745 0.0392274673 1.200719e-05 7.832541e-05 3 121729865 121730017 153 - 1.499 0.898 -2.147
ENSG00000173230 E083 0.0000000       3 121730018 121730474 457 -      
ENSG00000173230 E084 1.7037530 0.0491727735 4.022166e-01 5.459300e-01 3 121730848 121730875 28 - 0.468 0.298 -0.973
ENSG00000173230 E085 18.0697017 0.0244103686 4.436503e-07 3.964725e-06 3 121730876 121730973 98 - 1.400 0.694 -2.614
ENSG00000173230 E086 2.8337997 0.0837171792 8.914512e-02 1.738228e-01 3 121749010 121749631 622 - 0.667 0.297 -1.895
ENSG00000173230 E087 11.7388543 0.0014792660 1.535573e-06 1.224626e-05 3 121749632 121749845 214 - 1.217 0.597 -2.389
ENSG00000173230 E088 0.5997190 0.1200632059 2.226374e-01 3.535456e-01 3 121749846 121749966 121 - 0.270 0.000 -13.862