ENSG00000173064

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000377560 ENSG00000173064 HEK293_OSMI2_2hA HEK293_TMG_2hB HECTD4 protein_coding protein_coding 10.73794 12.19469 6.890513 0.877635 0.1020428 -0.8226606 1.1100840 0.6360349 1.0690179 0.23583983 0.31987987 0.7400347 0.12709167 0.05200000 0.15590000 0.10390000 1.976518e-01 1.59897e-10 FALSE TRUE
ENST00000547085 ENSG00000173064 HEK293_OSMI2_2hA HEK293_TMG_2hB HECTD4 protein_coding retained_intron 10.73794 12.19469 6.890513 0.877635 0.1020428 -0.8226606 0.7348756 0.5241141 0.6157996 0.08786551 0.07695820 0.2285526 0.06954167 0.04306667 0.08920000 0.04613333 4.992372e-02 1.59897e-10 FALSE TRUE
ENST00000548588 ENSG00000173064 HEK293_OSMI2_2hA HEK293_TMG_2hB HECTD4 protein_coding protein_coding 10.73794 12.19469 6.890513 0.877635 0.1020428 -0.8226606 0.5642131 1.2098724 0.1366428 0.26949987 0.07316060 -3.0563519 0.04682083 0.09826667 0.02016667 -0.07810000 2.274149e-02 1.59897e-10 FALSE TRUE
ENST00000548896 ENSG00000173064 HEK293_OSMI2_2hA HEK293_TMG_2hB HECTD4 protein_coding processed_transcript 10.73794 12.19469 6.890513 0.877635 0.1020428 -0.8226606 0.2156706 0.1849708 0.5052660 0.05463942 0.07197030 1.4020594 0.02544167 0.01476667 0.07343333 0.05866667 2.296449e-04 1.59897e-10   FALSE
ENST00000549141 ENSG00000173064 HEK293_OSMI2_2hA HEK293_TMG_2hB HECTD4 protein_coding processed_transcript 10.73794 12.19469 6.890513 0.877635 0.1020428 -0.8226606 2.5446845 4.5835314 0.2335681 0.51009273 0.23356805 -4.2372069 0.19993333 0.37796667 0.03320000 -0.34476667 2.229471e-02 1.59897e-10   FALSE
ENST00000651701 ENSG00000173064 HEK293_OSMI2_2hA HEK293_TMG_2hB HECTD4 protein_coding nonsense_mediated_decay 10.73794 12.19469 6.890513 0.877635 0.1020428 -0.8226606 2.1681707 3.0889782 0.7297430 0.32186510 0.08641066 -2.0666967 0.17898750 0.25220000 0.10630000 -0.14590000 2.078381e-05 1.59897e-10 TRUE TRUE
ENST00000682272 ENSG00000173064 HEK293_OSMI2_2hA HEK293_TMG_2hB HECTD4 protein_coding protein_coding 10.73794 12.19469 6.890513 0.877635 0.1020428 -0.8226606 1.3008949 0.7419028 2.0071682 0.09348063 0.22267373 1.4237134 0.14451250 0.06093333 0.29056667 0.22963333 1.598970e-10 1.59897e-10 FALSE TRUE
MSTRG.8049.11 ENSG00000173064 HEK293_OSMI2_2hA HEK293_TMG_2hB HECTD4 protein_coding   10.73794 12.19469 6.890513 0.877635 0.1020428 -0.8226606 1.1934280 0.6690072 1.0207711 0.18427650 0.07737655 0.6022253 0.11646667 0.05473333 0.14823333 0.09350000 1.157836e-02 1.59897e-10 TRUE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000173064 E001 0.0000000       12 112160188 112160189 2 -      
ENSG00000173064 E002 0.0000000       12 112160190 112160194 5 -      
ENSG00000173064 E003 0.8385790 0.0754098190 2.141381e-01 3.434080e-01 12 112160195 112160207 13 - 0.121 0.365 2.042
ENSG00000173064 E004 7.9104003 0.0022215162 1.023618e-06 8.470773e-06 12 112160208 112160262 55 - 0.466 1.132 2.708
ENSG00000173064 E005 16.9449538 0.0494566567 5.203401e-06 3.688150e-05 12 112160263 112160321 59 - 0.739 1.447 2.590
ENSG00000173064 E006 45.8003005 0.0275122793 1.281326e-11 2.620852e-10 12 112160322 112160467 146 - 1.120 1.873 2.595
ENSG00000173064 E007 27.1780225 0.0135262872 7.735064e-14 2.236546e-12 12 112160468 112160469 2 - 0.870 1.653 2.778
ENSG00000173064 E008 33.9802730 0.0142333943 1.191497e-10 2.077355e-09 12 112160470 112160484 15 - 1.109 1.726 2.138
ENSG00000173064 E009 95.4018023 0.0119799102 5.377971e-14 1.589207e-12 12 112160485 112160644 160 - 1.610 2.154 1.834
ENSG00000173064 E010 119.2617044 0.0116821590 5.057114e-15 1.739073e-13 12 112160645 112160861 217 - 1.710 2.250 1.813
ENSG00000173064 E011 90.7517090 0.0063471976 1.960355e-10 3.288615e-09 12 112160862 112160973 112 - 1.710 2.096 1.300
ENSG00000173064 E012 330.2454460 0.0090370730 5.706463e-11 1.048974e-09 12 112160974 112162103 1130 - 2.292 2.646 1.179
ENSG00000173064 E013 69.1880982 0.0015629907 4.116296e-08 4.517030e-07 12 112162104 112162213 110 - 1.652 1.947 0.997
ENSG00000173064 E014 100.5707422 0.0023713282 5.997815e-06 4.195968e-05 12 112162214 112162523 310 - 1.858 2.089 0.774
ENSG00000173064 E015 0.4439371 0.0215958817 7.696447e-02 1.546334e-01 12 112162769 112163041 273 - 0.293 0.000 -12.929
ENSG00000173064 E016 63.2220290 0.0046236096 3.122275e-03 1.062537e-02 12 112163042 112163257 216 - 1.677 1.878 0.681
ENSG00000173064 E017 19.9513525 0.0012424607 4.089046e-01 5.525177e-01 12 112163258 112163264 7 - 1.263 1.358 0.333
ENSG00000173064 E018 0.1515154 0.0432174459 4.673621e-01   12 112163265 112163321 57 - 0.121 0.000 -11.210
ENSG00000173064 E019 54.4698834 0.0031255722 8.288771e-04 3.362202e-03 12 112163542 112163737 196 - 1.600 1.821 0.749
ENSG00000173064 E020 52.6924437 0.0126097487 3.607300e-02 8.372646e-02 12 112164109 112164275 167 - 1.607 1.801 0.658
ENSG00000173064 E021 3.9877726 0.0162502699 1.484994e-01 2.596351e-01 12 112166181 112167316 1136 - 0.552 0.798 1.040
ENSG00000173064 E022 59.0543011 0.0004000830 1.551514e-02 4.166319e-02 12 112167317 112167538 222 - 1.688 1.833 0.490
ENSG00000173064 E023 33.3590415 0.0015858034 1.127889e-01 2.096117e-01 12 112167814 112167917 104 - 1.456 1.588 0.452
ENSG00000173064 E024 10.1158902 0.0333730876 3.726517e-02 8.597739e-02 12 112168633 112168806 174 - 1.151 0.905 -0.902
ENSG00000173064 E025 39.7476434 0.0133344285 9.140969e-01 9.495743e-01 12 112169503 112169658 156 - 1.592 1.621 0.098
ENSG00000173064 E026 15.7556287 0.0012312561 5.465693e-02 1.174018e-01 12 112169659 112170185 527 - 1.285 1.153 -0.467
ENSG00000173064 E027 49.1018809 0.0065608880 6.897012e-01 7.915444e-01 12 112170333 112170452 120 - 1.664 1.720 0.188
ENSG00000173064 E028 11.1129469 0.0990021670 4.116607e-05 2.366281e-04 12 112170740 112171116 377 - 0.466 1.294 3.278
ENSG00000173064 E029 64.8307014 0.0089032724 1.754600e-03 6.454819e-03 12 112171117 112171263 147 - 1.674 1.906 0.784
ENSG00000173064 E030 7.7577823 0.0022906806 2.820451e-04 1.306804e-03 12 112171264 112171347 84 - 0.624 1.099 1.851
ENSG00000173064 E031 60.4921488 0.0004477391 2.211548e-04 1.054440e-03 12 112172671 112172861 191 - 1.662 1.866 0.690
ENSG00000173064 E032 55.6392771 0.0004440680 2.469963e-02 6.126223e-02 12 112175736 112175859 124 - 1.665 1.805 0.475
ENSG00000173064 E033 55.5143937 0.0004276899 1.115564e-01 2.078442e-01 12 112176596 112176699 104 - 1.685 1.793 0.366
ENSG00000173064 E034 15.3854262 0.0011483956 3.982075e-02 9.069722e-02 12 112176700 112176702 3 - 1.087 1.297 0.747
ENSG00000173064 E035 63.0150405 0.0003820654 5.302065e-01 6.628570e-01 12 112178931 112179082 152 - 1.766 1.827 0.204
ENSG00000173064 E036 70.8589847 0.0003824258 1.440097e-01 2.534743e-01 12 112179174 112179397 224 - 1.794 1.889 0.319
ENSG00000173064 E037 55.9547254 0.0004912226 1.227813e-01 2.239304e-01 12 112183059 112183266 208 - 1.682 1.789 0.361
ENSG00000173064 E038 170.0108076 0.0002735830 3.259712e-01 4.694179e-01 12 112184187 112185493 1307 - 2.190 2.250 0.202
ENSG00000173064 E039 44.0489213 0.0064882000 8.136186e-01 8.818496e-01 12 112190786 112190965 180 - 1.640 1.657 0.057
ENSG00000173064 E040 46.6182130 0.0011180756 7.310514e-02 1.484947e-01 12 112192560 112192765 206 - 1.705 1.643 -0.209
ENSG00000173064 E041 37.2600685 0.0007025938 1.073874e-02 3.054276e-02 12 112193061 112193191 131 - 1.633 1.519 -0.389
ENSG00000173064 E042 44.5221900 0.0029292912 4.119164e-02 9.323672e-02 12 112193469 112193674 206 - 1.697 1.613 -0.283
ENSG00000173064 E043 27.2142855 0.0035309513 2.572098e-01 3.942748e-01 12 112194885 112194996 112 - 1.470 1.423 -0.164
ENSG00000173064 E044 20.2180025 0.0009467545 7.366713e-01 8.270972e-01 12 112194997 112195066 70 - 1.313 1.319 0.021
ENSG00000173064 E045 28.9546552 0.0006801439 1.038471e-01 1.963739e-01 12 112200638 112200798 161 - 1.511 1.438 -0.249
ENSG00000173064 E046 3.2923928 0.0050662562 3.246775e-01 4.680886e-01 12 112201127 112201438 312 - 0.685 0.562 -0.541
ENSG00000173064 E047 11.2769854 0.0016935501 5.949616e-01 7.171177e-01 12 112202963 112203635 673 - 1.039 1.121 0.299
ENSG00000173064 E048 36.5615414 0.0079173274 4.887114e-01 6.262380e-01 12 112203636 112203772 137 - 1.578 1.559 -0.066
ENSG00000173064 E049 41.1369457 0.0101156546 2.763722e-01 4.158226e-01 12 112204486 112204623 138 - 1.640 1.599 -0.142
ENSG00000173064 E050 35.2550256 0.0007618892 7.712051e-03 2.305583e-02 12 112207874 112208000 127 - 1.617 1.492 -0.425
ENSG00000173064 E051 33.7300358 0.0006102656 1.464977e-02 3.970627e-02 12 112208494 112208630 137 - 1.596 1.483 -0.388
ENSG00000173064 E052 44.5214842 0.0005419905 1.394457e-02 3.809531e-02 12 112210015 112210252 238 - 1.702 1.606 -0.328
ENSG00000173064 E053 35.5750551 0.0391714055 8.009129e-02 1.596962e-01 12 112212487 112212650 164 - 1.624 1.489 -0.463
ENSG00000173064 E054 23.0057960 0.0448912330 9.413024e-02 1.815882e-01 12 112216292 112216371 80 - 1.446 1.297 -0.520
ENSG00000173064 E055 21.3088764 0.0465211299 2.150393e-01 3.444858e-01 12 112216773 112216820 48 - 1.393 1.293 -0.347
ENSG00000173064 E056 25.6272819 0.0156762528 3.265918e-02 7.712097e-02 12 112216821 112216921 101 - 1.493 1.338 -0.537
ENSG00000173064 E057 29.2792455 0.0178196554 9.491941e-02 1.827589e-01 12 112217034 112217195 162 - 1.532 1.425 -0.366
ENSG00000173064 E058 24.5394598 0.0214502928 5.346774e-02 1.153233e-01 12 112219386 112219489 104 - 1.480 1.328 -0.526
ENSG00000173064 E059 0.0000000       12 112219490 112219580 91 -      
ENSG00000173064 E060 0.7686361 0.1587667482 7.220252e-01 8.162400e-01 12 112226454 112226642 189 - 0.215 0.296 0.610
ENSG00000173064 E061 27.3538071 0.0051331881 1.208485e-01 2.211582e-01 12 112226643 112226758 116 - 1.493 1.412 -0.281
ENSG00000173064 E062 0.8115846 0.4968132273 5.630742e-01 6.905921e-01 12 112226759 112226820 62 - 0.121 0.316 1.738
ENSG00000173064 E063 35.6460044 0.0055741129 3.818027e-02 8.769536e-02 12 112228089 112228258 170 - 1.613 1.507 -0.362
ENSG00000173064 E064 36.5477537 0.0080283327 1.998591e-04 9.631092e-04 12 112228647 112228804 158 - 1.679 1.446 -0.797
ENSG00000173064 E065 15.0112253 0.0012048972 6.302411e-05 3.462798e-04 12 112228805 112228811 7 - 1.346 1.025 -1.143
ENSG00000173064 E066 38.3216770 0.0066631988 4.961213e-05 2.798198e-04 12 112229698 112229880 183 - 1.702 1.461 -0.822
ENSG00000173064 E067 33.4961809 0.0006781034 2.644269e-03 9.203713e-03 12 112230687 112230822 136 - 1.603 1.454 -0.511
ENSG00000173064 E068 0.1515154 0.0432174459 4.673621e-01   12 112230823 112231463 641 - 0.121 0.000 -11.210
ENSG00000173064 E069 34.3412200 0.0125834303 6.764571e-03 2.061129e-02 12 112231513 112231715 203 - 1.627 1.453 -0.594
ENSG00000173064 E070 19.8341921 0.0342075137 2.422275e-02 6.027040e-02 12 112233004 112233085 82 - 1.415 1.206 -0.731
ENSG00000173064 E071 32.9303917 0.0134586344 4.352911e-03 1.413009e-02 12 112235077 112235266 190 - 1.620 1.422 -0.679
ENSG00000173064 E072 38.3254010 0.0082355640 1.230763e-02 3.427275e-02 12 112235504 112235784 281 - 1.655 1.515 -0.477
ENSG00000173064 E073 27.2859667 0.0007891822 9.804520e-03 2.827967e-02 12 112236945 112237098 154 - 1.511 1.371 -0.483
ENSG00000173064 E074 30.8883646 0.0240736860 1.693940e-02 4.479622e-02 12 112239052 112239236 185 - 1.585 1.403 -0.625
ENSG00000173064 E075 24.8543356 0.0078823799 2.972487e-04 1.368578e-03 12 112239881 112240027 147 - 1.527 1.269 -0.894
ENSG00000173064 E076 21.7290920 0.0060828995 4.306890e-05 2.464442e-04 12 112243353 112243519 167 - 1.493 1.191 -1.051
ENSG00000173064 E077 19.9627969 0.0662507896 8.393448e-03 2.477276e-02 12 112243620 112243761 142 - 1.461 1.147 -1.099
ENSG00000173064 E078 15.5877736 0.0359830408 6.402804e-03 1.967004e-02 12 112243874 112244009 136 - 1.346 1.057 -1.025
ENSG00000173064 E079 24.0953282 0.0017766650 1.101465e-05 7.247224e-05 12 112246901 112247076 176 - 1.523 1.236 -0.998
ENSG00000173064 E080 14.4444822 0.0023523477 5.770828e-06 4.050724e-05 12 112247462 112247550 89 - 1.352 0.967 -1.379
ENSG00000173064 E081 13.4546722 0.0085456589 1.996700e-04 9.623447e-04 12 112248067 112248171 105 - 1.299 0.953 -1.246
ENSG00000173064 E082 19.8101056 0.0205247498 1.482536e-03 5.580633e-03 12 112248320 112248512 193 - 1.436 1.151 -0.999
ENSG00000173064 E083 0.0000000       12 112249557 112250143 587 -      
ENSG00000173064 E084 25.2732672 0.0008435869 7.542168e-06 5.152319e-05 12 112250144 112250377 234 - 1.540 1.260 -0.969
ENSG00000173064 E085 22.6727496 0.0124984202 1.156119e-03 4.492141e-03 12 112250971 112251134 164 - 1.489 1.237 -0.876
ENSG00000173064 E086 17.8447419 0.0012930232 2.436563e-03 8.571313e-03 12 112252424 112252528 105 - 1.376 1.163 -0.749
ENSG00000173064 E087 0.0000000       12 112252529 112252558 30 -      
ENSG00000173064 E088 19.6027204 0.0027864322 1.442686e-04 7.220938e-04 12 112254043 112254162 120 - 1.436 1.163 -0.955
ENSG00000173064 E089 18.5723912 0.0407192645 8.364090e-03 2.469906e-02 12 112256320 112256518 199 - 1.415 1.138 -0.970
ENSG00000173064 E090 0.0000000       12 112258380 112258495 116 -      
ENSG00000173064 E091 16.1768270 0.0015199411 2.000050e-03 7.225882e-03 12 112258496 112258596 101 - 1.333 1.100 -0.825
ENSG00000173064 E092 20.2791109 0.0011111502 1.061978e-04 5.504929e-04 12 112259112 112259265 154 - 1.441 1.173 -0.938
ENSG00000173064 E093 20.5075328 0.0209821637 2.874833e-03 9.896759e-03 12 112261305 112261429 125 - 1.452 1.177 -0.961
ENSG00000173064 E094 0.3697384 0.0253547842 2.116694e-01 3.404548e-01 12 112261430 112262136 707 - 0.000 0.220 11.429
ENSG00000173064 E095 6.5376474 0.0025907233 5.168144e-03 1.638534e-02 12 112264084 112264089 6 - 1.013 0.696 -1.229
ENSG00000173064 E096 22.0592804 0.0025011315 1.165282e-06 9.542218e-06 12 112264090 112264212 123 - 1.507 1.163 -1.197
ENSG00000173064 E097 17.3032569 0.0011466995 2.213474e-06 1.704990e-05 12 112265175 112265295 121 - 1.415 1.051 -1.287
ENSG00000173064 E098 15.1686741 0.0202217749 2.128028e-06 1.645303e-05 12 112265878 112265932 55 - 1.404 0.902 -1.804
ENSG00000173064 E099 11.6610902 0.0273677449 2.846870e-06 2.141732e-05 12 112265933 112265983 51 - 1.320 0.750 -2.103
ENSG00000173064 E100 14.7601253 0.0104424512 1.043088e-07 1.055721e-06 12 112266912 112266982 71 - 1.399 0.882 -1.861
ENSG00000173064 E101 21.4579427 0.0008897288 1.780228e-09 2.518737e-08 12 112269704 112269849 146 - 1.528 1.099 -1.499
ENSG00000173064 E102 27.4576640 0.0007508372 3.239311e-12 7.310911e-11 12 112270227 112270459 233 - 1.637 1.191 -1.541
ENSG00000173064 E103 18.9928634 0.0361468822 6.655006e-04 2.772448e-03 12 112273655 112273795 141 - 1.456 1.092 -1.281
ENSG00000173064 E104 17.5491041 0.0797879580 1.311329e-02 3.617068e-02 12 112274847 112274960 114 - 1.415 1.086 -1.161
ENSG00000173064 E105 18.3318853 0.1203832097 2.121599e-02 5.404690e-02 12 112279228 112279386 159 - 1.446 1.083 -1.277
ENSG00000173064 E106 21.3086144 0.0281649799 1.114258e-04 5.742615e-04 12 112283110 112283302 193 - 1.507 1.127 -1.326
ENSG00000173064 E107 23.7381770 0.0010167793 3.288057e-09 4.428183e-08 12 112306064 112306234 171 - 1.556 1.153 -1.401
ENSG00000173064 E108 21.1593425 0.0009818001 4.170352e-11 7.840237e-10 12 112308753 112308891 139 - 1.536 1.051 -1.702
ENSG00000173064 E109 15.5285183 0.0012015111 6.972723e-07 5.990484e-06 12 112309561 112309669 109 - 1.387 0.982 -1.446
ENSG00000173064 E110 15.8280889 0.0011056431 1.892917e-08 2.217185e-07 12 112313017 112313147 131 - 1.415 0.951 -1.657
ENSG00000173064 E111 12.3978706 0.0328870066 2.591913e-05 1.565885e-04 12 112314457 112314546 90 - 1.332 0.800 -1.950
ENSG00000173064 E112 23.5893221 0.0046309514 1.457533e-11 2.954792e-10 12 112319225 112319564 340 - 1.593 1.076 -1.805
ENSG00000173064 E113 18.7723875 0.0010824182 2.948269e-09 4.006174e-08 12 112319565 112319742 178 - 1.480 1.025 -1.606
ENSG00000173064 E114 16.7153583 0.0020072218 1.702351e-01 2.884843e-01 12 112381952 112382439 488 - 1.292 1.209 -0.291