ENSG00000172915

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000400445 ENSG00000172915 HEK293_OSMI2_2hA HEK293_TMG_2hB NBEA protein_coding protein_coding 2.826143 2.4954 3.224187 0.1107426 0.3502846 0.368362 0.16095611 0.01896678 0.14178525 0.01896678 0.07106093 2.3895603 0.05982083 0.007766667 0.04106667 0.03330000 4.911050e-01 4.148581e-08 FALSE TRUE
ENST00000686952 ENSG00000172915 HEK293_OSMI2_2hA HEK293_TMG_2hB NBEA protein_coding protein_coding 2.826143 2.4954 3.224187 0.1107426 0.3502846 0.368362 0.06792406 0.44829328 0.00000000 0.22515244 0.00000000 -5.5181992 0.02677083 0.177966667 0.00000000 -0.17796667 1.519274e-01 4.148581e-08 FALSE TRUE
ENST00000687287 ENSG00000172915 HEK293_OSMI2_2hA HEK293_TMG_2hB NBEA protein_coding protein_coding 2.826143 2.4954 3.224187 0.1107426 0.3502846 0.368362 0.05725481 0.22204881 0.00000000 0.16751016 0.00000000 -4.5363564 0.02105417 0.089433333 0.00000000 -0.08943333 1.540214e-01 4.148581e-08 FALSE TRUE
ENST00000687868 ENSG00000172915 HEK293_OSMI2_2hA HEK293_TMG_2hB NBEA protein_coding processed_transcript 2.826143 2.4954 3.224187 0.1107426 0.3502846 0.368362 0.20466581 0.17693263 0.27496736 0.01633563 0.05050836 0.6082783 0.07512083 0.070800000 0.08436667 0.01356667 7.786462e-01 4.148581e-08 FALSE TRUE
ENST00000688626 ENSG00000172915 HEK293_OSMI2_2hA HEK293_TMG_2hB NBEA protein_coding protein_coding 2.826143 2.4954 3.224187 0.1107426 0.3502846 0.368362 0.34930532 0.22227484 0.54367774 0.13490668 0.05150151 1.2532136 0.11065833 0.086000000 0.16913333 0.08313333 5.260138e-01 4.148581e-08 FALSE TRUE
ENST00000690273 ENSG00000172915 HEK293_OSMI2_2hA HEK293_TMG_2hB NBEA protein_coding retained_intron 2.826143 2.4954 3.224187 0.1107426 0.3502846 0.368362 0.34767895 0.92381808 0.09641995 0.17718584 0.05312837 -3.1333729 0.13758333 0.377266667 0.02876667 -0.34850000 3.587902e-04 4.148581e-08   FALSE
MSTRG.8591.8 ENSG00000172915 HEK293_OSMI2_2hA HEK293_TMG_2hB NBEA protein_coding   2.826143 2.4954 3.224187 0.1107426 0.3502846 0.368362 0.59217295 0.00000000 1.04897109 0.00000000 0.14470170 6.7265194 0.19294167 0.000000000 0.34213333 0.34213333 4.148581e-08 4.148581e-08 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000172915 E001 0.2214452 0.0405314074 1.613940e-01   13 34942270 34942289 20 + 0.000 0.199 11.174
ENSG00000172915 E002 8.6132733 0.0019304910 4.274223e-05 2.447672e-04 13 34942290 34943114 825 + 1.037 0.437 -2.511
ENSG00000172915 E003 0.0000000       13 34943961 34944191 231 +      
ENSG00000172915 E004 7.8298107 0.0023032193 1.088617e-02 3.089482e-02 13 35040933 35041164 232 + 0.974 0.650 -1.280
ENSG00000172915 E005 1.2857384 0.0250621211 4.927443e-01 6.298849e-01 13 35041165 35044100 2936 + 0.282 0.437 0.923
ENSG00000172915 E006 0.1451727 0.0433946351 1.000000e+00   13 35044642 35044946 305 + 0.073 0.000 -12.622
ENSG00000172915 E007 5.4391315 0.0113709546 9.569972e-03 2.770819e-02 13 35044947 35045047 101 + 0.848 0.437 -1.801
ENSG00000172915 E008 3.6559960 0.0238496422 3.759137e-02 8.656764e-02 13 35045306 35045401 96 + 0.701 0.334 -1.798
ENSG00000172915 E009 2.2604838 0.0062786711 5.508239e-02 1.181427e-01 13 35048563 35048655 93 + 0.552 0.198 -2.149
ENSG00000172915 E010 1.4747940 0.0092586854 2.869695e-02 6.940041e-02 13 35048656 35048684 29 + 0.452 0.000 -15.459
ENSG00000172915 E011 5.3468255 0.0029807790 1.530840e-04 7.607696e-04 13 35050269 35050395 127 + 0.870 0.198 -3.471
ENSG00000172915 E012 0.0000000       13 35050396 35051664 1269 +      
ENSG00000172915 E013 0.0000000       13 35055424 35056009 586 +      
ENSG00000172915 E014 6.2545071 0.0475412428 1.676722e-03 6.208468e-03 13 35056010 35056129 120 + 0.920 0.334 -2.659
ENSG00000172915 E015 6.1104923 0.0969935073 2.281445e-02 5.735614e-02 13 35058717 35058863 147 + 0.900 0.436 -2.006
ENSG00000172915 E016 2.7160742 0.0482842537 1.540831e-01 2.672152e-01 13 35069908 35069945 38 + 0.595 0.333 -1.347
ENSG00000172915 E017 6.3478948 0.0076549230 3.004489e-02 7.204408e-02 13 35069946 35070105 160 + 0.891 0.590 -1.231
ENSG00000172915 E018 6.1011778 0.0026969835 3.887451e-02 8.894946e-02 13 35070719 35070852 134 + 0.870 0.590 -1.149
ENSG00000172915 E019 0.0000000       13 35070853 35071011 159 +      
ENSG00000172915 E020 0.1472490 0.0427254562 1.000000e+00   13 35095996 35096101 106 + 0.073 0.000 -12.622
ENSG00000172915 E021 3.6047025 0.1491060261 3.267402e-02 7.715215e-02 13 35098297 35098405 109 + 0.716 0.200 -2.846
ENSG00000172915 E022 0.0000000       13 35099222 35099325 104 +      
ENSG00000172915 E023 5.0050729 0.0245919499 3.637896e-05 2.117648e-04 13 35109290 35109442 153 + 0.859 0.000 -16.754
ENSG00000172915 E024 8.0255317 0.0497143317 1.784437e-02 4.680132e-02 13 35110810 35110978 169 + 0.990 0.592 -1.594
ENSG00000172915 E025 4.3459421 0.0080492097 1.208227e-01 2.211247e-01 13 35117414 35117493 80 + 0.746 0.520 -0.986
ENSG00000172915 E026 4.4756876 0.0067922245 3.206410e-02 7.598188e-02 13 35118228 35118290 63 + 0.774 0.437 -1.513
ENSG00000172915 E027 6.0331100 0.0440510131 3.131592e-02 7.451465e-02 13 35118377 35118474 98 + 0.881 0.520 -1.514
ENSG00000172915 E028 7.1747954 0.0025758330 2.874265e-02 6.948876e-02 13 35123482 35123574 93 + 0.930 0.650 -1.114
ENSG00000172915 E029 0.0000000       13 35123575 35123912 338 +      
ENSG00000172915 E030 9.5662818 0.0060634343 1.575772e-02 4.219010e-02 13 35142269 35142377 109 + 1.037 0.751 -1.095
ENSG00000172915 E031 9.0889215 0.0164083345 6.030972e-03 1.869263e-02 13 35155774 35155855 82 + 1.030 0.652 -1.480
ENSG00000172915 E032 7.9548359 0.0960180487 9.129289e-02 1.771428e-01 13 35156083 35156206 124 + 0.967 0.659 -1.217
ENSG00000172915 E033 9.7004797 0.0021046651 1.070477e-02 3.046443e-02 13 35157078 35157270 193 + 1.044 0.750 -1.122
ENSG00000172915 E034 28.2548663 0.0007758995 8.585654e-05 4.556224e-04 13 35159016 35159881 866 + 1.479 1.205 -0.954
ENSG00000172915 E035 8.8242747 0.0381458631 2.651668e-02 6.498294e-02 13 35159882 35160032 151 + 1.022 0.701 -1.244
ENSG00000172915 E036 12.6104647 0.0157257908 2.430002e-02 6.043487e-02 13 35161750 35161967 218 + 1.146 0.900 -0.906
ENSG00000172915 E037 10.1346509 0.0018605182 3.105871e-02 7.402629e-02 13 35164356 35164509 154 + 1.058 0.831 -0.853
ENSG00000172915 E038 0.0000000       13 35166774 35166951 178 +      
ENSG00000172915 E039 0.8846520 0.0136296094 5.984363e-01 7.200325e-01 13 35168987 35168995 9 + 0.282 0.198 -0.665
ENSG00000172915 E040 9.5958765 0.0017699149 1.305240e-01 2.348881e-01 13 35171272 35171440 169 + 1.015 0.867 -0.554
ENSG00000172915 E041 4.1124031 0.0039579688 1.680803e-01 2.856992e-01 13 35171441 35171452 12 + 0.717 0.520 -0.865
ENSG00000172915 E042 9.5784973 0.0019175473 4.093914e-01 5.530020e-01 13 35173464 35173594 131 + 0.991 0.930 -0.225
ENSG00000172915 E043 8.2107320 0.0081561351 8.741665e-01 9.230919e-01 13 35176996 35177103 108 + 0.911 0.931 0.077
ENSG00000172915 E044 10.7761194 0.0016535433 9.730596e-01 9.871863e-01 13 35182360 35182528 169 + 1.015 1.057 0.156
ENSG00000172915 E045 8.6189676 0.0021388404 8.785561e-01 9.259981e-01 13 35183976 35184071 96 + 0.939 0.959 0.073
ENSG00000172915 E046 0.0000000       13 35195849 35195863 15 +      
ENSG00000172915 E047 9.0745314 0.0018475756 7.617636e-01 8.455476e-01 13 35195864 35195990 127 + 0.957 0.959 0.007
ENSG00000172915 E048 13.5845737 0.0099235375 2.732178e-01 4.122256e-01 13 35195991 35196226 236 + 1.141 1.057 -0.300
ENSG00000172915 E049 8.3227360 0.0199427918 7.748776e-02 1.554276e-01 13 35196227 35196302 76 + 0.975 0.751 -0.862
ENSG00000172915 E050 2.6947422 0.0061256272 1.226818e-01 2.237834e-01 13 35208700 35208717 18 + 0.594 0.334 -1.342
ENSG00000172915 E051 5.6905407 0.0028267722 8.411890e-04 3.405945e-03 13 35208718 35208836 119 + 0.880 0.334 -2.511
ENSG00000172915 E052 2.5465628 0.0058576096 3.191061e-02 7.568537e-02 13 35208837 35208854 18 + 0.594 0.198 -2.341
ENSG00000172915 E053 0.1817044 0.0381174679 1.627739e-01   13 35209779 35211052 1274 + 0.000 0.198 14.371
ENSG00000172915 E054 6.4783188 0.0025423175 2.136062e-02 5.434884e-02 13 35211053 35211179 127 + 0.901 0.590 -1.268
ENSG00000172915 E055 8.9382729 0.0268304060 2.970889e-01 4.383942e-01 13 35232492 35232619 128 + 0.983 0.867 -0.440
ENSG00000172915 E056 6.6891417 0.0024657181 4.933218e-02 1.079744e-01 13 35290389 35290450 62 + 0.901 0.650 -1.005
ENSG00000172915 E057 0.0000000       13 35290451 35291472 1022 +      
ENSG00000172915 E058 0.1451727 0.0433946351 1.000000e+00   13 35291473 35295049 3577 + 0.073 0.000 -12.622
ENSG00000172915 E059 0.0000000       13 35309215 35309324 110 +      
ENSG00000172915 E060 7.4472705 0.0024304856 5.058953e-02 1.102018e-01 13 35309528 35309592 65 + 0.939 0.703 -0.926
ENSG00000172915 E061 0.0000000       13 35323035 35323559 525 +      
ENSG00000172915 E062 6.3454397 0.0026595082 2.620588e-02 6.436698e-02 13 35349108 35349122 15 + 0.891 0.590 -1.229
ENSG00000172915 E063 8.6168807 0.0129332092 2.749175e-01 4.141436e-01 13 35349123 35349216 94 + 0.974 0.866 -0.409
ENSG00000172915 E064 9.2720563 0.0018517217 8.741492e-01 9.230890e-01 13 35352157 35352323 167 + 0.966 0.985 0.073
ENSG00000172915 E065 6.6902226 0.0055876585 6.892369e-01 7.911457e-01 13 35432269 35432393 125 + 0.848 0.831 -0.064
ENSG00000172915 E066 8.4801136 0.0025588855 1.800547e-01 3.012420e-01 13 35452092 35452235 144 + 0.966 0.831 -0.511
ENSG00000172915 E067 0.7427016 0.0154321094 1.752649e-01 2.950206e-01 13 35452236 35453799 1564 + 0.282 0.000 -14.669
ENSG00000172915 E068 0.0000000       13 35470796 35471215 420 +      
ENSG00000172915 E069 0.0000000       13 35471216 35471289 74 +      
ENSG00000172915 E070 0.0000000       13 35471290 35471394 105 +      
ENSG00000172915 E071 0.0000000       13 35471395 35471509 115 +      
ENSG00000172915 E072 0.0000000       13 35471510 35471560 51 +      
ENSG00000172915 E073 0.0000000       13 35471846 35471995 150 +      
ENSG00000172915 E074 0.0000000       13 35471996 35472078 83 +      
ENSG00000172915 E075 0.0000000       13 35472079 35472105 27 +      
ENSG00000172915 E076 0.0000000       13 35472106 35472149 44 +      
ENSG00000172915 E077 0.0000000       13 35472150 35472224 75 +      
ENSG00000172915 E078 0.0000000       13 35472375 35472399 25 +      
ENSG00000172915 E079 10.5482058 0.0062989659 4.746305e-01 6.134393e-01 13 35472400 35472536 137 + 1.030 0.986 -0.162
ENSG00000172915 E080 0.2214452 0.0405314074 1.613940e-01   13 35474950 35475352 403 + 0.000 0.199 14.366
ENSG00000172915 E081 0.8836053 0.0310122097 1.138908e-01 2.111966e-01 13 35475622 35476014 393 + 0.136 0.438 2.247
ENSG00000172915 E082 0.0000000       13 35476675 35476797 123 +      
ENSG00000172915 E083 0.0000000       13 35476798 35476808 11 +      
ENSG00000172915 E084 0.0000000       13 35476809 35476837 29 +      
ENSG00000172915 E085 0.0000000       13 35476838 35476847 10 +      
ENSG00000172915 E086 0.4448795 0.6400141124 8.572939e-02 1.685588e-01 13 35476848 35476914 67 + 0.000 0.418 14.775
ENSG00000172915 E087 0.7414659 1.0101993017 1.271234e-01 2.301369e-01 13 35476915 35477015 101 + 0.000 0.555 15.072
ENSG00000172915 E088 0.0000000       13 35513158 35513279 122 +      
ENSG00000172915 E089 0.0000000       13 35521907 35522032 126 +      
ENSG00000172915 E090 10.8390200 0.0016260140 7.235003e-02 1.472566e-01 13 35550477 35550594 118 + 1.072 0.900 -0.640
ENSG00000172915 E091 11.9743613 0.0015036465 1.892061e-01 3.127386e-01 13 35550930 35551032 103 + 1.092 0.986 -0.388
ENSG00000172915 E092 9.6009596 0.0034117836 2.374684e-01 3.712278e-01 13 35554987 35555102 116 + 1.007 0.900 -0.400
ENSG00000172915 E093 12.6181691 0.0111042577 9.335699e-01 9.621426e-01 13 35566905 35567017 113 + 1.072 1.120 0.174
ENSG00000172915 E094 14.8775572 0.0032396475 5.953198e-01 7.174354e-01 13 35583898 35584038 141 + 1.129 1.220 0.326
ENSG00000172915 E095 0.1482932 0.0423860737 1.624660e-01   13 35584039 35585118 1080 + 0.000 0.198 14.354
ENSG00000172915 E096 0.0000000       13 35589339 35589485 147 +      
ENSG00000172915 E097 2.2238489 0.0082100300 7.016474e-01 8.007193e-01 13 35589486 35589815 330 + 0.479 0.437 -0.215
ENSG00000172915 E098 1.7713684 0.1109690740 3.099794e-02 7.391398e-02 13 35589816 35591798 1983 + 0.505 0.000 -15.623
ENSG00000172915 E099 1.9595293 0.0073402295 9.504026e-02 1.829321e-01 13 35591799 35592952 1154 + 0.505 0.198 -1.926
ENSG00000172915 E100 0.4460135 0.0250899548 4.127630e-01 5.563345e-01 13 35592953 35593005 53 + 0.190 0.000 -14.050
ENSG00000172915 E101 0.9264823 0.0323111268 6.037877e-01 7.244865e-01 13 35593006 35593327 322 + 0.282 0.198 -0.663
ENSG00000172915 E102 14.2783412 0.0016453442 1.214119e-01 2.219458e-01 13 35593328 35593447 120 + 1.079 1.264 0.659
ENSG00000172915 E103 13.4772229 0.0016677745 8.306876e-02 1.643564e-01 13 35606426 35606578 153 + 1.044 1.250 0.736
ENSG00000172915 E104 0.6599951 0.0174812621 2.063484e-03 7.421795e-03 13 35607071 35607496 426 + 0.000 0.520 16.256
ENSG00000172915 E105 0.0000000       13 35617413 35617878 466 +      
ENSG00000172915 E106 12.1357353 0.0051848017 7.757671e-02 1.555747e-01 13 35628081 35628248 168 + 0.999 1.221 0.799
ENSG00000172915 E107 0.1515154 0.0425319748 1.000000e+00   13 35628249 35629155 907 + 0.073 0.000 -12.622
ENSG00000172915 E108 0.0000000       13 35629156 35629324 169 +      
ENSG00000172915 E109 0.5858876 0.0235415390 1.000000e+00 1.000000e+00 13 35629325 35630332 1008 + 0.190 0.198 0.072
ENSG00000172915 E110 0.1515154 0.0425319748 1.000000e+00   13 35645869 35645931 63 + 0.073 0.000 -12.622
ENSG00000172915 E111 0.0000000       13 35646003 35646223 221 +      
ENSG00000172915 E112 0.0000000       13 35646224 35646258 35 +      
ENSG00000172915 E113 10.0856166 0.0095198955 7.014378e-01 8.006118e-01 13 35646259 35646348 90 + 0.974 1.058 0.306
ENSG00000172915 E114 4.5509385 0.0037022037 8.359766e-01 8.974477e-01 13 35649655 35649669 15 + 0.685 0.750 0.266
ENSG00000172915 E115 13.3642944 0.0013284746 6.271086e-01 7.429466e-01 13 35649670 35649847 178 + 1.085 1.173 0.313
ENSG00000172915 E116 0.0000000       13 35649848 35649864 17 +      
ENSG00000172915 E117 9.0130167 0.0068295739 4.665985e-01 6.061433e-01 13 35651805 35651876 72 + 0.911 1.036 0.464
ENSG00000172915 E118 15.2327646 0.0012954724 3.573478e-03 1.193729e-02 13 35654855 35655010 156 + 1.051 1.350 1.062
ENSG00000172915 E119 16.2551272 0.0011833597 2.711197e-03 9.407281e-03 13 35655579 35655749 171 + 1.085 1.383 1.050
ENSG00000172915 E120 0.5890081 0.0602992332 3.202472e-01 4.633516e-01 13 35655750 35655755 6 + 0.136 0.332 1.649
ENSG00000172915 E121 13.9878664 0.0012771181 1.426102e-02 3.881930e-02 13 35665085 35665186 102 + 1.037 1.303 0.948
ENSG00000172915 E122 1.0976913 0.0283215931 8.834808e-01 9.294615e-01 13 35666447 35667373 927 + 0.282 0.334 0.338
ENSG00000172915 E123 22.0370965 0.0008486483 1.340551e-04 6.769831e-04 13 35667374 35667570 197 + 1.200 1.524 1.126
ENSG00000172915 E124 0.5848434 0.0232424679 2.652524e-01 4.032878e-01 13 35668279 35668367 89 + 0.239 0.000 -14.402
ENSG00000172915 E125 21.4208059 0.0009624518 1.379757e-04 6.946524e-04 13 35668368 35668519 152 + 1.189 1.516 1.136
ENSG00000172915 E126 0.5911862 0.0182745174 2.638129e-01 4.017308e-01 13 35668520 35668600 81 + 0.239 0.000 -14.402
ENSG00000172915 E127 24.5444025 0.0008591185 2.989035e-06 2.237312e-05 13 35670901 35671234 334 + 1.224 1.593 1.277
ENSG00000172915 E128 91.1826734 0.0218375128 6.507321e-13 1.647898e-11 13 35671235 35672737 1503 + 1.684 2.235 1.850
ENSG00000172915 E129 0.0000000       13 35672798 35673022 225 +