ENSG00000172869

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000311085 ENSG00000172869 HEK293_OSMI2_2hA HEK293_TMG_2hB DMXL1 protein_coding protein_coding 4.559026 1.192769 6.481889 0.1843425 0.1995857 2.432279 0.70746276 0.00000000 1.2793496 0.00000000 0.98636185 7.010500 0.10495417 0.00000000 0.19986667 0.199866667 5.132058e-01 2.948556e-05 FALSE TRUE
ENST00000503802 ENSG00000172869 HEK293_OSMI2_2hA HEK293_TMG_2hB DMXL1 protein_coding protein_coding 4.559026 1.192769 6.481889 0.1843425 0.1995857 2.432279 0.27693308 0.20686462 0.0000000 0.11316627 0.00000000 -4.438723 0.11659583 0.16830000 0.00000000 -0.168300000 2.897255e-02 2.948556e-05 FALSE TRUE
ENST00000505312 ENSG00000172869 HEK293_OSMI2_2hA HEK293_TMG_2hB DMXL1 protein_coding processed_transcript 4.559026 1.192769 6.481889 0.1843425 0.1995857 2.432279 0.12716437 0.23340622 0.0460510 0.11829203 0.01897146 -2.118554 0.07199583 0.20503333 0.00720000 -0.197833333 4.858113e-02 2.948556e-05 TRUE TRUE
ENST00000511622 ENSG00000172869 HEK293_OSMI2_2hA HEK293_TMG_2hB DMXL1 protein_coding processed_transcript 4.559026 1.192769 6.481889 0.1843425 0.1995857 2.432279 0.50454904 0.00000000 0.8946550 0.00000000 0.09192493 6.499296 0.06810000 0.00000000 0.13743333 0.137433333 2.948556e-05 2.948556e-05 FALSE FALSE
ENST00000515335 ENSG00000172869 HEK293_OSMI2_2hA HEK293_TMG_2hB DMXL1 protein_coding processed_transcript 4.559026 1.192769 6.481889 0.1843425 0.1995857 2.432279 0.04568323 0.05239168 0.0000000 0.05239168 0.00000000 -2.641354 0.01201667 0.05610000 0.00000000 -0.056100000 4.147709e-01 2.948556e-05   FALSE
ENST00000539542 ENSG00000172869 HEK293_OSMI2_2hA HEK293_TMG_2hB DMXL1 protein_coding protein_coding 4.559026 1.192769 6.481889 0.1843425 0.1995857 2.432279 0.69683366 0.15897319 1.3618758 0.02820447 0.10640650 3.021284 0.14190417 0.13486667 0.21050000 0.075633333 3.311054e-01 2.948556e-05 FALSE TRUE
MSTRG.26803.16 ENSG00000172869 HEK293_OSMI2_2hA HEK293_TMG_2hB DMXL1 protein_coding   4.559026 1.192769 6.481889 0.1843425 0.1995857 2.432279 0.26254953 0.31605440 0.0000000 0.15927871 0.00000000 -5.027041 0.14058333 0.24940000 0.00000000 -0.249400000 3.661426e-02 2.948556e-05 FALSE TRUE
MSTRG.26803.4 ENSG00000172869 HEK293_OSMI2_2hA HEK293_TMG_2hB DMXL1 protein_coding   4.559026 1.192769 6.481889 0.1843425 0.1995857 2.432279 0.73749390 0.03142162 1.3893633 0.03142162 0.72333710 5.078243 0.10650000 0.03363333 0.21383333 0.180200000 6.329247e-01 2.948556e-05 FALSE TRUE
MSTRG.26803.6 ENSG00000172869 HEK293_OSMI2_2hA HEK293_TMG_2hB DMXL1 protein_coding   4.559026 1.192769 6.481889 0.1843425 0.1995857 2.432279 0.19515707 0.12863191 0.5233589 0.12863191 0.30252740 1.943847 0.05326667 0.08300000 0.07833333 -0.004666667 8.811359e-01 2.948556e-05 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000172869 E001 0.0000000       5 119037772 119037888 117 +      
ENSG00000172869 E002 0.0000000       5 119044870 119044978 109 +      
ENSG00000172869 E003 0.0000000       5 119071014 119071023 10 +      
ENSG00000172869 E004 1.0245142 0.1602998765 4.897111e-01 6.271034e-01 5 119071024 119071086 63 + 0.261 0.000 -10.047
ENSG00000172869 E005 1.6146682 0.0274326006 7.901768e-01 8.657953e-01 5 119071087 119071097 11 + 0.339 0.277 -0.402
ENSG00000172869 E006 1.0340911 0.0118123298 8.418566e-01 9.013887e-01 5 119071098 119071105 8 + 0.233 0.278 0.336
ENSG00000172869 E007 3.5534837 0.0053475243 4.847357e-01 6.226925e-01 5 119071106 119071125 20 + 0.527 0.661 0.598
ENSG00000172869 E008 6.8611543 0.0234093714 2.790975e-01 4.187934e-01 5 119071126 119071189 64 + 0.730 0.911 0.711
ENSG00000172869 E009 7.2944823 0.0609978287 4.129035e-01 5.564698e-01 5 119071190 119071204 15 + 0.757 0.910 0.597
ENSG00000172869 E010 8.6379470 0.0082397225 3.846847e-01 5.288365e-01 5 119071205 119071257 53 + 0.824 0.957 0.505
ENSG00000172869 E011 5.5358019 0.0036020318 7.485690e-01 8.357741e-01 5 119071258 119071328 71 + 0.680 0.738 0.243
ENSG00000172869 E012 5.9608112 0.0180478324 7.881463e-01 8.643239e-01 5 119071329 119071489 161 + 0.711 0.662 -0.202
ENSG00000172869 E013 5.9766171 0.0028771943 8.381331e-01 8.987930e-01 5 119071490 119071528 39 + 0.701 0.739 0.157
ENSG00000172869 E014 4.7534467 0.0039456603 8.447462e-01 9.033798e-01 5 119071529 119071554 26 + 0.622 0.661 0.167
ENSG00000172869 E015 13.1988764 0.0341211776 1.808062e-01 3.022102e-01 5 119071555 119071656 102 + 0.972 1.160 0.683
ENSG00000172869 E016 1.3391983 0.0103640401 1.000000e+00 1.000000e+00 5 119081574 119081697 124 + 0.289 0.278 -0.080
ENSG00000172869 E017 18.4266781 0.0156402700 2.480572e-01 3.836395e-01 5 119097979 119098104 126 + 1.115 1.255 0.498
ENSG00000172869 E018 0.2987644 0.0290785164 1.000000e+00   5 119100601 119100671 71 + 0.092 0.000 -11.141
ENSG00000172869 E019 15.0381194 0.0012567022 8.125242e-01 8.810932e-01 5 119101935 119102006 72 + 1.062 1.035 -0.095
ENSG00000172869 E020 0.0000000       5 119102007 119102210 204 +      
ENSG00000172869 E021 0.3030308 0.3173243188 1.000000e+00   5 119104128 119104280 153 + 0.093 0.000 -10.436
ENSG00000172869 E022 12.9076097 0.0015113301 2.753045e-01 4.145882e-01 5 119105180 119105222 43 + 1.015 0.861 -0.575
ENSG00000172869 E023 13.2031479 0.0013763550 5.373402e-01 6.689238e-01 5 119105223 119105258 36 + 0.989 1.070 0.297
ENSG00000172869 E024 0.0000000       5 119105259 119105259 1 +      
ENSG00000172869 E025 18.4322930 0.0038153024 2.036650e-02 5.225739e-02 5 119110151 119110283 133 + 1.092 1.335 0.860
ENSG00000172869 E026 13.3620607 0.0023042113 6.808725e-02 1.401909e-01 5 119114475 119114541 67 + 0.967 1.186 0.793
ENSG00000172869 E027 25.2691977 0.0008753869 2.470513e-03 8.675277e-03 5 119116158 119116336 179 + 1.220 1.485 0.921
ENSG00000172869 E028 0.2966881 0.0290785164 1.000000e+00   5 119118122 119118172 51 + 0.092 0.000 -11.141
ENSG00000172869 E029 26.3178842 0.0212748589 5.650187e-04 2.402880e-03 5 119118815 119119004 190 + 1.215 1.581 1.268
ENSG00000172869 E030 28.3734497 0.0395906911 1.524610e-01 2.650280e-01 5 119120971 119121139 169 + 1.284 1.486 0.703
ENSG00000172869 E031 0.0000000       5 119129209 119129210 2 +      
ENSG00000172869 E032 30.6564976 0.0522592226 4.678690e-01 6.073269e-01 5 119129211 119129423 213 + 1.329 1.458 0.447
ENSG00000172869 E033 31.9805996 0.0005936410 3.901977e-01 5.342000e-01 5 119133132 119133385 254 + 1.373 1.297 -0.264
ENSG00000172869 E034 0.6674587 0.0250381914 4.387024e-01 5.805647e-01 5 119133386 119133485 100 + 0.132 0.278 1.339
ENSG00000172869 E035 46.6116108 0.0042492808 3.062921e-02 7.319414e-02 5 119133494 119134178 685 + 1.540 1.352 -0.647
ENSG00000172869 E036 1.1951715 0.0514484613 3.654101e-01 5.097219e-01 5 119134226 119134267 42 + 0.289 0.000 -12.838
ENSG00000172869 E037 16.7023125 0.0010938360 1.954291e-03 7.084745e-03 5 119134268 119134389 122 + 1.139 0.661 -1.833
ENSG00000172869 E038 11.1589202 0.0015635932 3.904045e-03 1.287464e-02 5 119143841 119143930 90 + 0.984 0.446 -2.268
ENSG00000172869 E039 12.3276886 0.0071832297 9.859501e-03 2.841864e-02 5 119144536 119144638 103 + 1.019 0.567 -1.815
ENSG00000172869 E040 14.2871041 0.0012629653 8.873215e-03 2.596376e-02 5 119146837 119146956 120 + 1.075 0.661 -1.602
ENSG00000172869 E041 18.2700042 0.0010928528 6.669880e-04 2.777790e-03 5 119147249 119147470 222 + 1.178 0.661 -1.973
ENSG00000172869 E042 0.0000000       5 119147471 119147582 112 +      
ENSG00000172869 E043 104.9229988 0.0066125130 5.938687e-11 1.087336e-09 5 119148739 119150421 1683 + 1.908 1.386 -1.776
ENSG00000172869 E044 20.7476293 0.0014015532 2.150546e-03 7.691709e-03 5 119151929 119152036 108 + 1.223 0.804 -1.549
ENSG00000172869 E045 23.0909387 0.0071747091 1.839386e-02 4.799742e-02 5 119164507 119164676 170 + 1.259 0.958 -1.086
ENSG00000172869 E046 16.7070022 0.0037756974 2.454331e-02 6.093835e-02 5 119165183 119165280 98 + 1.127 0.805 -1.206
ENSG00000172869 E047 17.5237863 0.0054598127 4.379464e-02 9.801646e-02 5 119166616 119166781 166 + 1.142 0.862 -1.036
ENSG00000172869 E048 6.8538848 0.0147565402 8.898652e-02 1.735832e-01 5 119167603 119167628 26 + 0.792 0.446 -1.537
ENSG00000172869 E049 20.8357089 0.0009158417 5.268551e-04 2.260216e-03 5 119167629 119167864 236 + 1.229 0.739 -1.834
ENSG00000172869 E050 24.4624319 0.0008047740 2.432356e-03 8.559374e-03 5 119170190 119170524 335 + 1.286 0.912 -1.355
ENSG00000172869 E051 19.5618488 0.0011258234 4.189563e-03 1.367741e-02 5 119170525 119170715 191 + 1.198 0.804 -1.460
ENSG00000172869 E052 27.7508930 0.0007513238 1.039758e-03 4.096647e-03 5 119170716 119170942 227 + 1.341 0.957 -1.376
ENSG00000172869 E053 32.7036296 0.0006624776 2.486152e-01 3.842913e-01 5 119170943 119171280 338 + 1.381 1.277 -0.363
ENSG00000172869 E054 23.8274514 0.0008004748 9.415038e-03 2.731973e-02 5 119171778 119171969 192 + 1.270 0.957 -1.127
ENSG00000172869 E055 12.8658928 0.0020023572 1.533720e-01 2.662623e-01 5 119175261 119175337 77 + 1.015 0.805 -0.797
ENSG00000172869 E056 24.1521489 0.0008631794 1.417582e-01 2.504469e-01 5 119177357 119177484 128 + 1.262 1.102 -0.567
ENSG00000172869 E057 32.3567665 0.0006539278 6.801789e-01 7.841312e-01 5 119177996 119178244 249 + 1.368 1.335 -0.117
ENSG00000172869 E058 27.6073321 0.0016360987 7.284312e-01 8.209101e-01 5 119189708 119189886 179 + 1.307 1.277 -0.105
ENSG00000172869 E059 26.9985272 0.0050181487 8.435035e-01 9.025553e-01 5 119193828 119193970 143 + 1.294 1.277 -0.059
ENSG00000172869 E060 18.7610992 0.0565565354 8.853093e-01 9.306513e-01 5 119196371 119196456 86 + 1.136 1.167 0.111
ENSG00000172869 E061 8.7743893 0.0136582614 8.948622e-01 9.368104e-01 5 119197755 119197757 3 + 0.840 0.863 0.088
ENSG00000172869 E062 14.5111273 0.0088841726 5.075147e-01 6.430000e-01 5 119197758 119197818 61 + 1.048 0.958 -0.332
ENSG00000172869 E063 23.1787897 0.0008267176 1.909320e-01 3.149154e-01 5 119197819 119197956 138 + 1.244 1.102 -0.507
ENSG00000172869 E064 22.4528956 0.0008687829 8.782232e-01 9.258011e-01 5 119203319 119203436 118 + 1.214 1.234 0.069
ENSG00000172869 E065 0.2987644 0.0290785164 1.000000e+00   5 119206497 119206833 337 + 0.092 0.000 -11.141
ENSG00000172869 E066 1.4060076 0.0095885026 1.000000e+00 1.000000e+00 5 119206834 119206896 63 + 0.289 0.278 -0.078
ENSG00000172869 E067 21.6153924 0.0008517551 6.129192e-02 1.288128e-01 5 119216901 119216987 87 + 1.168 1.352 0.649
ENSG00000172869 E068 25.8419876 0.0007544238 6.016183e-02 1.268811e-01 5 119220472 119220593 122 + 1.244 1.416 0.600
ENSG00000172869 E069 29.0172939 0.0006724959 8.979426e-01 9.388586e-01 5 119220940 119221081 142 + 1.324 1.316 -0.029
ENSG00000172869 E070 18.3259398 0.0061306604 5.166413e-01 6.511907e-01 5 119224709 119224769 61 + 1.146 1.069 -0.277
ENSG00000172869 E071 29.8701823 0.0008862673 5.180459e-01 6.523333e-01 5 119233340 119233467 128 + 1.324 1.385 0.212
ENSG00000172869 E072 1.1888288 0.0124896383 3.496697e-01 4.938744e-01 5 119236314 119237321 1008 + 0.289 0.000 -12.953
ENSG00000172869 E073 24.1983140 0.0087663794 1.485398e-01 2.596879e-01 5 119237322 119237414 93 + 1.221 1.370 0.522
ENSG00000172869 E074 22.2896633 0.0009482600 3.552700e-01 4.996299e-01 5 119238989 119239080 92 + 1.201 1.297 0.336
ENSG00000172869 E075 22.1822543 0.0008961591 2.184607e-01 3.485579e-01 5 119240419 119240471 53 + 1.191 1.316 0.439
ENSG00000172869 E076 37.5631358 0.0075039650 1.089224e-02 3.090723e-02 5 119244359 119244576 218 + 1.393 1.607 0.732
ENSG00000172869 E077 110.6272140 0.0004643685 1.119758e-25 1.305445e-23 5 119246995 119249138 2144 + 1.801 2.215 1.388