ENSG00000172053

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000306125 ENSG00000172053 HEK293_OSMI2_2hA HEK293_TMG_2hB QARS1 protein_coding protein_coding 217.6125 320.2965 139.5466 6.372861 1.273525 -1.198603 82.38494 135.99637 53.633931 14.044157 1.6952739 -1.342187 0.37167083 0.4232333 0.38416667 -0.03906667 7.174048e-01 4.93302e-28 FALSE TRUE
ENST00000453392 ENSG00000172053 HEK293_OSMI2_2hA HEK293_TMG_2hB QARS1 protein_coding protein_coding 217.6125 320.2965 139.5466 6.372861 1.273525 -1.198603 22.42422 50.31016 2.721489 2.475260 0.3650492 -4.203377 0.08207917 0.1570000 0.01953333 -0.13746667 4.933020e-28 4.93302e-28 FALSE TRUE
ENST00000464962 ENSG00000172053 HEK293_OSMI2_2hA HEK293_TMG_2hB QARS1 protein_coding protein_coding 217.6125 320.2965 139.5466 6.372861 1.273525 -1.198603 50.34760 78.14951 26.243328 6.158203 2.0554056 -1.573921 0.22387917 0.2449333 0.18833333 -0.05660000 3.476304e-01 4.93302e-28 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000172053 E001 5.991776 2.937951e-03 1.289415e-02 3.566748e-02 3 49095932 49095932 1 - 0.418 0.839 1.869
ENSG00000172053 E002 6.173480 3.062977e-03 1.022953e-02 2.932978e-02 3 49095933 49095933 1 - 0.417 0.852 1.918
ENSG00000172053 E003 39.845493 5.498869e-03 1.574542e-04 7.803592e-04 3 49095934 49095936 3 - 1.286 1.601 1.088
ENSG00000172053 E004 51.404881 4.503093e-03 4.727527e-07 4.201218e-06 3 49095937 49095938 2 - 1.332 1.717 1.320
ENSG00000172053 E005 57.862339 7.400060e-03 8.818896e-08 9.046532e-07 3 49095939 49095940 2 - 1.342 1.771 1.467
ENSG00000172053 E006 95.518447 7.021503e-03 7.954855e-01 8.694090e-01 3 49095941 49095947 7 - 1.918 1.914 -0.015
ENSG00000172053 E007 225.987855 6.684310e-03 2.027000e-03 7.310420e-03 3 49095948 49095953 6 - 2.151 2.317 0.554
ENSG00000172053 E008 254.178290 7.534182e-03 6.729972e-05 3.670994e-04 3 49095954 49095960 7 - 2.157 2.376 0.730
ENSG00000172053 E009 345.109562 6.734518e-03 9.230127e-07 7.717110e-06 3 49095961 49095993 33 - 2.266 2.513 0.822
ENSG00000172053 E010 1150.240256 3.809130e-03 1.023215e-07 1.037048e-06 3 49095994 49096079 86 - 2.838 3.025 0.622
ENSG00000172053 E011 24.653112 7.728570e-04 5.994976e-03 1.859780e-02 3 49097110 49097133 24 - 1.478 1.281 -0.684
ENSG00000172053 E012 48.841659 4.771696e-04 1.542607e-03 5.773942e-03 3 49097134 49097287 154 - 1.743 1.577 -0.563
ENSG00000172053 E013 1007.722788 3.924065e-03 1.616443e-05 1.024113e-04 3 49097992 49098034 43 - 2.805 2.962 0.523
ENSG00000172053 E014 1414.466968 3.069700e-03 3.952036e-05 2.280957e-04 3 49098035 49098092 58 - 2.973 3.105 0.438
ENSG00000172053 E015 1003.915198 3.805640e-03 1.026868e-03 4.051420e-03 3 49098093 49098093 1 - 2.834 2.954 0.399
ENSG00000172053 E016 1191.660141 3.524672e-03 1.106207e-04 5.707487e-04 3 49098094 49098117 24 - 2.897 3.031 0.444
ENSG00000172053 E017 51.330573 6.941215e-04 3.954642e-11 7.463589e-10 3 49098118 49098191 74 - 1.874 1.540 -1.132
ENSG00000172053 E018 1697.740558 3.252885e-03 1.573961e-06 1.252078e-05 3 49098192 49098251 60 - 3.034 3.188 0.511
ENSG00000172053 E019 1082.525173 3.115816e-03 1.332552e-06 1.077502e-05 3 49098252 49098258 7 - 2.835 2.994 0.527
ENSG00000172053 E020 51.436881 6.033473e-04 8.594281e-22 6.675567e-20 3 49098259 49098352 94 - 1.959 1.487 -1.598
ENSG00000172053 E021 1178.766812 2.376267e-03 1.165929e-07 1.170049e-06 3 49098353 49098372 20 - 2.876 3.030 0.512
ENSG00000172053 E022 1988.669193 1.712071e-03 7.783156e-11 1.398687e-09 3 49098373 49098480 108 - 3.102 3.257 0.516
ENSG00000172053 E023 25.029840 1.144213e-02 1.483023e-10 2.542343e-09 3 49098481 49098549 69 - 1.684 1.147 -1.862
ENSG00000172053 E024 18.227637 1.226623e-02 1.428311e-08 1.710858e-07 3 49098550 49098599 50 - 1.543 1.014 -1.862
ENSG00000172053 E025 1465.474712 3.380462e-04 4.504818e-24 4.496440e-22 3 49098600 49098692 93 - 2.970 3.124 0.515
ENSG00000172053 E026 56.271818 4.537872e-04 5.892833e-31 1.057178e-28 3 49098693 49098884 192 - 2.027 1.485 -1.838
ENSG00000172053 E027 1728.070075 1.435318e-04 4.233199e-13 1.101754e-11 3 49098885 49098974 90 - 3.091 3.184 0.307
ENSG00000172053 E028 1144.801726 7.578221e-05 1.216786e-04 6.214722e-04 3 49098975 49098989 15 - 2.939 2.997 0.190
ENSG00000172053 E029 1863.711809 6.528001e-05 2.244348e-06 1.726780e-05 3 49099110 49099239 130 - 3.153 3.209 0.187
ENSG00000172053 E030 811.044973 5.133111e-04 7.943690e-03 2.363881e-02 3 49099240 49099253 14 - 2.792 2.849 0.189
ENSG00000172053 E031 13.813912 1.327303e-03 3.984648e-02 9.074490e-02 3 49099330 49099343 14 - 1.234 1.043 -0.686
ENSG00000172053 E032 1040.392442 1.467216e-04 1.765364e-02 4.639048e-02 3 49099344 49099402 59 - 2.912 2.953 0.136
ENSG00000172053 E033 982.170452 9.261768e-05 7.376892e-06 5.050887e-05 3 49099403 49099431 29 - 2.864 2.934 0.235
ENSG00000172053 E034 1313.079963 1.137872e-04 2.712490e-05 1.630618e-04 3 49099510 49099589 80 - 2.997 3.058 0.200
ENSG00000172053 E035 1199.853954 6.995307e-04 2.715517e-01 4.103273e-01 3 49099590 49099647 58 - 2.984 3.012 0.092
ENSG00000172053 E036 1522.079553 2.390959e-03 8.199856e-01 8.863924e-01 3 49099761 49099853 93 - 3.097 3.113 0.052
ENSG00000172053 E037 27.998234 6.971176e-04 8.697821e-12 1.829642e-10 3 49099854 49099960 107 - 1.685 1.239 -1.537
ENSG00000172053 E038 1005.563727 2.405307e-03 2.230377e-01 3.540091e-01 3 49099961 49099993 33 - 2.947 2.924 -0.078
ENSG00000172053 E039 1472.199729 9.264262e-04 5.766137e-02 1.226137e-01 3 49099994 49100083 90 - 3.114 3.088 -0.086
ENSG00000172053 E040 793.306864 2.742550e-04 1.152045e-05 7.546733e-05 3 49100084 49100091 8 - 2.873 2.810 -0.210
ENSG00000172053 E041 25.638950 7.243516e-04 4.350982e-18 2.217000e-16 3 49100092 49100189 98 - 1.717 1.133 -2.022
ENSG00000172053 E042 732.508571 4.022118e-04 1.722770e-03 6.354180e-03 3 49100190 49100198 9 - 2.827 2.780 -0.158
ENSG00000172053 E043 923.415244 2.965492e-04 1.357996e-04 6.848616e-04 3 49100199 49100228 30 - 2.931 2.879 -0.171
ENSG00000172053 E044 799.358062 1.227565e-03 1.654110e-02 4.393067e-02 3 49100229 49100240 12 - 2.863 2.818 -0.151
ENSG00000172053 E045 1054.759158 2.071250e-03 7.298525e-01 8.219594e-01 3 49100241 49100298 58 - 2.950 2.949 -0.004
ENSG00000172053 E046 1087.846808 5.193293e-04 6.488525e-01 7.602683e-01 3 49100380 49100458 79 - 2.962 2.962 0.001
ENSG00000172053 E047 632.446592 3.769761e-04 5.397531e-02 1.162235e-01 3 49100575 49100588 14 - 2.748 2.720 -0.094
ENSG00000172053 E048 858.339275 7.244679e-04 5.061066e-03 1.609758e-02 3 49100589 49100607 19 - 2.894 2.849 -0.150
ENSG00000172053 E049 906.854920 1.870303e-03 2.580173e-02 6.353261e-02 3 49100608 49100630 23 - 2.920 2.873 -0.157
ENSG00000172053 E050 1049.585120 1.566735e-03 6.440259e-02 1.340446e-01 3 49100631 49100659 29 - 2.973 2.939 -0.113
ENSG00000172053 E051 974.928859 1.219226e-03 6.340704e-02 1.323710e-01 3 49100660 49100674 15 - 2.939 2.908 -0.104
ENSG00000172053 E052 7.484787 1.099561e-02 2.804710e-03 9.688797e-03 3 49100675 49100740 66 - 1.109 0.743 -1.386
ENSG00000172053 E053 919.265183 1.251767e-03 7.137999e-02 1.456249e-01 3 49101355 49101378 24 - 2.913 2.882 -0.104
ENSG00000172053 E054 1052.024406 1.426923e-03 9.291012e-02 1.796819e-01 3 49101379 49101441 63 - 2.970 2.941 -0.096
ENSG00000172053 E055 630.722514 1.716972e-03 1.535934e-01 2.665519e-01 3 49101620 49101626 7 - 2.748 2.719 -0.095
ENSG00000172053 E056 1089.048556 5.452283e-04 4.041883e-01 5.478917e-01 3 49101627 49101685 59 - 2.967 2.961 -0.020
ENSG00000172053 E057 739.235661 4.809979e-04 6.654880e-01 7.731609e-01 3 49101686 49101705 20 - 2.783 2.798 0.052
ENSG00000172053 E058 8.112286 4.246745e-03 5.460395e-02 1.173012e-01 3 49101706 49101827 122 - 1.050 0.827 -0.842
ENSG00000172053 E059 965.929826 1.293697e-03 1.903566e-01 3.142126e-01 3 49101828 49101863 36 - 2.926 2.906 -0.068
ENSG00000172053 E060 818.925318 1.101910e-03 1.107380e-01 2.066120e-01 3 49101864 49101883 20 - 2.859 2.833 -0.087
ENSG00000172053 E061 702.641995 1.276346e-03 2.477935e-02 6.141976e-02 3 49101884 49101887 4 - 2.806 2.762 -0.146
ENSG00000172053 E062 818.611690 1.294766e-03 2.121278e-01 3.410423e-01 3 49101888 49101899 12 - 2.854 2.834 -0.067
ENSG00000172053 E063 1105.243331 1.215030e-03 7.884805e-02 1.576753e-01 3 49102205 49102251 47 - 2.991 2.963 -0.095
ENSG00000172053 E064 837.398125 8.781185e-04 1.042920e-01 1.970225e-01 3 49102252 49102262 11 - 2.868 2.843 -0.082
ENSG00000172053 E065 747.803842 1.031468e-03 7.979912e-02 1.592462e-01 3 49102263 49102265 3 - 2.823 2.793 -0.099
ENSG00000172053 E066 736.467296 8.778371e-04 3.610649e-02 8.379290e-02 3 49102419 49102419 1 - 2.820 2.785 -0.118
ENSG00000172053 E067 932.058486 1.095686e-03 2.395504e-02 5.971093e-02 3 49102420 49102448 29 - 2.925 2.886 -0.130
ENSG00000172053 E068 841.870647 1.157674e-03 2.068669e-02 5.292726e-02 3 49102449 49102472 24 - 2.883 2.841 -0.140
ENSG00000172053 E069 7.356927 1.087194e-02 1.733864e-01 2.925939e-01 3 49102473 49102594 122 - 0.983 0.813 -0.645
ENSG00000172053 E070 2.210027 6.850623e-03 7.297923e-01 8.219069e-01 3 49102595 49102606 12 - 0.499 0.443 -0.283
ENSG00000172053 E071 2.503595 6.274338e-03 9.824275e-02 1.878556e-01 3 49102607 49102665 59 - 0.678 0.411 -1.259
ENSG00000172053 E072 2.395042 2.831349e-02 7.810691e-02 1.564310e-01 3 49102666 49102687 22 - 0.678 0.377 -1.445
ENSG00000172053 E073 1.702591 6.095635e-02 3.877872e-01 5.319274e-01 3 49102688 49102702 15 - 0.499 0.339 -0.865
ENSG00000172053 E074 2.141230 1.831752e-01 2.568718e-01 3.938916e-01 3 49102703 49102732 30 - 0.626 0.376 -1.231
ENSG00000172053 E075 2.987093 5.087071e-03 1.405307e-01 2.487700e-01 3 49103333 49103344 12 - 0.317 0.597 1.454
ENSG00000172053 E076 859.147377 1.203771e-03 2.350149e-02 5.877760e-02 3 49103345 49103376 32 - 2.891 2.850 -0.138
ENSG00000172053 E077 895.121554 2.229755e-03 7.896161e-03 2.351717e-02 3 49103377 49103409 33 - 2.925 2.863 -0.207
ENSG00000172053 E078 25.025479 3.153446e-03 4.143909e-15 1.442843e-13 3 49103410 49103431 22 - 1.704 1.145 -1.935
ENSG00000172053 E079 25.729772 4.670627e-02 3.844211e-08 4.239822e-07 3 49103432 49103466 35 - 1.755 1.089 -2.311
ENSG00000172053 E080 21.010696 2.950045e-02 2.660921e-08 3.026921e-07 3 49103467 49103476 10 - 1.644 1.048 -2.082
ENSG00000172053 E081 20.490475 2.590286e-02 3.158502e-09 4.267651e-08 3 49103477 49103477 1 - 1.644 1.025 -2.166
ENSG00000172053 E082 34.760319 1.208530e-02 3.170850e-16 1.281647e-14 3 49103478 49103555 78 - 1.871 1.237 -2.172
ENSG00000172053 E083 44.023417 2.050027e-03 1.105884e-29 1.810772e-27 3 49103556 49103630 75 - 1.964 1.332 -2.151
ENSG00000172053 E084 835.844103 2.983620e-03 4.650794e-04 2.026401e-03 3 49103631 49103664 34 - 2.921 2.824 -0.322
ENSG00000172053 E085 861.612372 1.845698e-03 6.146400e-04 2.586904e-03 3 49103665 49103706 42 - 2.919 2.842 -0.257
ENSG00000172053 E086 5.954322 7.350049e-03 1.031108e-02 2.953438e-02 3 49103707 49103862 156 - 1.007 0.676 -1.291
ENSG00000172053 E087 685.144016 1.232435e-03 2.628855e-07 2.462076e-06 3 49103863 49103880 18 - 2.843 2.734 -0.363
ENSG00000172053 E088 1166.167860 9.798660e-04 1.228209e-12 2.971655e-11 3 49103881 49103972 92 - 3.086 2.960 -0.421
ENSG00000172053 E089 60.525991 3.718805e-02 8.391444e-01 8.994760e-01 3 49103973 49104014 42 - 1.705 1.718 0.043
ENSG00000172053 E090 72.953484 2.019940e-02 9.262716e-01 9.575851e-01 3 49104015 49104098 84 - 1.784 1.797 0.042
ENSG00000172053 E091 4.873774 1.842381e-02 3.834620e-04 1.710680e-03 3 49104099 49104323 225 - 1.029 0.527 -2.035
ENSG00000172053 E092 828.586750 6.188844e-04 3.147607e-13 8.334097e-12 3 49104324 49104356 33 - 2.936 2.812 -0.413
ENSG00000172053 E093 619.938888 8.427002e-04 8.347480e-11 1.493120e-09 3 49104357 49104372 16 - 2.814 2.685 -0.429
ENSG00000172053 E094 1094.090783 3.087662e-03 5.046534e-05 2.841499e-04 3 49104373 49104465 93 - 3.049 2.937 -0.372
ENSG00000172053 E095 528.822784 6.549568e-03 2.935003e-02 7.068206e-02 3 49104466 49104471 6 - 2.715 2.629 -0.287
ENSG00000172053 E096 9.099964 1.002649e-02 7.685583e-02 1.544675e-01 3 49104472 49104532 61 - 1.090 0.885 -0.760
ENSG00000172053 E097 609.611233 5.986039e-03 4.633276e-02 1.026392e-01 3 49104617 49104652 36 - 2.766 2.694 -0.240
ENSG00000172053 E098 682.948725 3.831482e-03 5.828217e-03 1.815868e-02 3 49104653 49104698 46 - 2.825 2.740 -0.283
ENSG00000172053 E099 532.527113 2.053236e-03 6.220432e-05 3.423415e-04 3 49104699 49104908 210 - 2.730 2.626 -0.347
ENSG00000172053 E100 2.978725 2.354618e-01 2.569891e-01 3.940245e-01 3 49104909 49105004 96 - 0.724 0.456 -1.208
ENSG00000172053 E101 4.158958 3.936635e-03 2.335743e-02 5.849223e-02 3 49105005 49105313 309 - 0.873 0.551 -1.336