ENSG00000170919

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000330825 ENSG00000170919 HEK293_OSMI2_2hA HEK293_TMG_2hB   lncRNA retained_intron 7.995025 9.607459 6.863042 1.270975 0.1318754 -0.4847071 0.4297689 0.3265094 0.4402900 0.02275220 0.05167874 0.4202077 0.05470417 0.03510000 0.06440000 0.02930000 0.202063589 0.001149002 TRUE TRUE
ENST00000521336 ENSG00000170919 HEK293_OSMI2_2hA HEK293_TMG_2hB   lncRNA lncRNA 7.995025 9.607459 6.863042 1.270975 0.1318754 -0.4847071 0.4494550 0.2003589 0.2747087 0.10488754 0.13770148 0.4366341 0.05842083 0.02016667 0.03940000 0.01923333 0.886438374 0.001149002   FALSE
ENST00000521507 ENSG00000170919 HEK293_OSMI2_2hA HEK293_TMG_2hB   lncRNA lncRNA 7.995025 9.607459 6.863042 1.270975 0.1318754 -0.4847071 0.3596631 0.0000000 0.5923630 0.00000000 0.35178313 5.9125612 0.04792917 0.00000000 0.08440000 0.08440000 0.154990619 0.001149002   FALSE
ENST00000522845 ENSG00000170919 HEK293_OSMI2_2hA HEK293_TMG_2hB   lncRNA lncRNA 7.995025 9.607459 6.863042 1.270975 0.1318754 -0.4847071 0.2765791 0.6502917 0.0000000 0.65029174 0.00000000 -6.0450317 0.03009167 0.05376667 0.00000000 -0.05376667 0.839064674 0.001149002   FALSE
ENST00000618947 ENSG00000170919 HEK293_OSMI2_2hA HEK293_TMG_2hB   lncRNA lncRNA 7.995025 9.607459 6.863042 1.270975 0.1318754 -0.4847071 0.9907135 2.3059512 0.5586868 0.44384465 0.05317153 -2.0258987 0.11782917 0.24006667 0.08130000 -0.15876667 0.001149002 0.001149002   FALSE
ENST00000659577 ENSG00000170919 HEK293_OSMI2_2hA HEK293_TMG_2hB   lncRNA lncRNA 7.995025 9.607459 6.863042 1.270975 0.1318754 -0.4847071 0.3896973 0.3487452 0.5420541 0.10029219 0.07441481 0.6218502 0.05143750 0.04010000 0.07936667 0.03926667 0.324994542 0.001149002   FALSE
MSTRG.8704.22 ENSG00000170919 HEK293_OSMI2_2hA HEK293_TMG_2hB   lncRNA   7.995025 9.607459 6.863042 1.270975 0.1318754 -0.4847071 0.3763426 0.2977434 0.8636501 0.29774338 0.03376341 1.5053278 0.05331250 0.02463333 0.12610000 0.10146667 0.108454360 0.001149002   FALSE
MSTRG.8704.41 ENSG00000170919 HEK293_OSMI2_2hA HEK293_TMG_2hB   lncRNA   7.995025 9.607459 6.863042 1.270975 0.1318754 -0.4847071 0.4742933 0.6452677 0.2622153 0.07346373 0.14540247 -1.2673363 0.05810000 0.06896667 0.03770000 -0.03126667 0.486064398 0.001149002   FALSE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000170919 E001 0.0000000       13 45341345 45341387 43 +      
ENSG00000170919 E002 0.0000000       13 45341405 45341416 12 +      
ENSG00000170919 E003 0.0000000       13 45341417 45341417 1 +      
ENSG00000170919 E004 0.0000000       13 45341418 45341418 1 +      
ENSG00000170919 E005 0.0000000       13 45341419 45341419 1 +      
ENSG00000170919 E006 0.0000000       13 45341420 45341428 9 +      
ENSG00000170919 E007 0.1482932 0.0412778063 7.215114e-01   13 45341429 45341440 12 + 0.000 0.099 8.454
ENSG00000170919 E008 0.9200498 0.0993569851 2.976320e-01 4.389718e-01 13 45341441 45341452 12 + 0.149 0.355 1.621
ENSG00000170919 E009 0.9200498 0.0993569851 2.976320e-01 4.389718e-01 13 45341453 45341453 1 + 0.149 0.355 1.621
ENSG00000170919 E010 0.9200498 0.0993569851 2.976320e-01 4.389718e-01 13 45341454 45341458 5 + 0.149 0.355 1.621
ENSG00000170919 E011 1.3231994 0.0100413953 9.984754e-02 1.902502e-01 13 45341459 45341468 10 + 0.150 0.447 2.131
ENSG00000170919 E012 1.3231994 0.0100413953 9.984754e-02 1.902502e-01 13 45341469 45341471 3 + 0.150 0.447 2.131
ENSG00000170919 E013 1.5446446 0.0091523448 6.373408e-02 1.329146e-01 13 45341472 45341480 9 + 0.150 0.486 2.325
ENSG00000170919 E014 1.5446446 0.0091523448 6.373408e-02 1.329146e-01 13 45341481 45341482 2 + 0.150 0.486 2.325
ENSG00000170919 E015 2.0595688 0.0072438620 9.503605e-02 1.829296e-01 13 45341483 45341490 8 + 0.261 0.553 1.647
ENSG00000170919 E016 2.5368154 0.0059670376 1.174944e-01 2.163648e-01 13 45341491 45341510 20 + 0.349 0.612 1.325
ENSG00000170919 E017 2.6883308 0.0057432271 2.413049e-01 3.757190e-01 13 45341511 45341512 2 + 0.422 0.612 0.910
ENSG00000170919 E018 2.6883308 0.0057432271 2.413049e-01 3.757190e-01 13 45341513 45341514 2 + 0.422 0.612 0.910
ENSG00000170919 E019 8.0951551 0.0022135224 1.888168e-02 4.907406e-02 13 45341515 45341574 60 + 0.742 1.022 1.075
ENSG00000170919 E020 7.5167456 0.0023182895 1.600232e-01 2.751465e-01 13 45341575 45341578 4 + 0.802 0.966 0.624
ENSG00000170919 E021 10.0912996 0.0017267680 5.653764e-02 1.206561e-01 13 45341579 45341591 13 + 0.880 1.082 0.752
ENSG00000170919 E022 9.6871058 0.0017728318 1.505085e-01 2.623729e-01 13 45341592 45341598 7 + 0.903 1.053 0.560
ENSG00000170919 E023 18.0640004 0.0017570802 2.291188e-01 3.613753e-01 13 45341599 45341614 16 + 1.187 1.280 0.327
ENSG00000170919 E024 19.3832991 0.0045892649 1.333031e-01 2.387159e-01 13 45341615 45341630 16 + 1.199 1.319 0.424
ENSG00000170919 E025 0.4448795 0.4213124473 3.550407e-01 4.993904e-01 13 45343426 45343540 115 + 0.000 0.239 11.975
ENSG00000170919 E026 0.2214452 0.0406989925 7.185994e-01   13 45344304 45344304 1 + 0.000 0.100 11.158
ENSG00000170919 E027 7.5468938 0.0027319987 2.325032e-02 5.826868e-02 13 45344305 45344328 24 + 0.709 0.989 1.091
ENSG00000170919 E028 24.4958784 0.0009696098 2.617578e-02 6.430638e-02 13 45344329 45344378 50 + 1.281 1.436 0.538
ENSG00000170919 E029 25.5698357 0.0007884202 5.662848e-02 1.208119e-01 13 45344379 45344418 40 + 1.317 1.444 0.441
ENSG00000170919 E030 26.5463920 0.0007896963 4.426656e-01 5.842499e-01 13 45344419 45344446 28 + 1.388 1.432 0.151
ENSG00000170919 E031 1.1686783 0.5346728444 7.346463e-01 8.255571e-01 13 45344754 45344909 156 + 0.349 0.310 -0.239
ENSG00000170919 E032 3.5729672 0.0045570429 1.443850e-01 2.539909e-01 13 45351897 45351901 5 + 0.485 0.709 1.003
ENSG00000170919 E033 6.5654601 0.0026750043 1.021374e-01 1.937656e-01 13 45351902 45352014 113 + 0.709 0.915 0.811
ENSG00000170919 E034 13.2735860 0.0030730755 1.614467e-03 6.006804e-03 13 45360141 45360239 99 + 0.903 1.223 1.167
ENSG00000170919 E035 8.1549275 0.0032422297 1.278405e-03 4.905013e-03 13 45360240 45360486 247 + 0.632 1.043 1.610
ENSG00000170919 E036 0.8460400 0.2655800475 1.447513e-01 2.544913e-01 13 45369801 45369958 158 + 0.000 0.318 12.635
ENSG00000170919 E037 19.7703600 0.0100724320 4.148349e-01 5.582375e-01 13 45369959 45370079 121 + 1.342 1.258 -0.293
ENSG00000170919 E038 25.7573975 0.0031867477 5.841169e-01 7.081146e-01 13 45370080 45370182 103 + 1.430 1.380 -0.172
ENSG00000170919 E039 5.8618446 0.0839545220 6.957529e-02 1.426559e-01 13 45370183 45371812 1630 + 1.003 0.699 -1.182
ENSG00000170919 E040 3.7907323 0.0650007309 5.347670e-02 1.153400e-01 13 45374934 45376302 1369 + 0.856 0.519 -1.425
ENSG00000170919 E041 0.4438354 0.0866003341 8.776867e-01 9.254318e-01 13 45376303 45376316 14 + 0.150 0.179 0.311
ENSG00000170919 E042 0.4438354 0.0866003341 8.776867e-01 9.254318e-01 13 45376317 45376371 55 + 0.150 0.179 0.311
ENSG00000170919 E043 4.1791081 0.0038095139 7.412851e-03 2.229150e-02 13 45376372 45377005 634 + 0.903 0.521 -1.592
ENSG00000170919 E044 1.0457324 0.0185951436 6.515133e-04 2.721119e-03 13 45377006 45377060 55 + 0.589 0.000 -15.434
ENSG00000170919 E045 15.1002867 0.0030821945 5.995096e-03 1.859787e-02 13 45377061 45377111 51 + 1.325 1.073 -0.895
ENSG00000170919 E046 13.4215510 0.0016129722 1.306782e-01 2.350966e-01 13 45377112 45377139 28 + 1.221 1.073 -0.529
ENSG00000170919 E047 13.8364556 0.0149112159 2.033887e-01 3.304492e-01 13 45377140 45377154 15 + 1.232 1.085 -0.523
ENSG00000170919 E048 13.7234345 0.0192433898 3.448676e-01 4.889658e-01 13 45377155 45377215 61 + 1.210 1.095 -0.411
ENSG00000170919 E049 8.7850452 0.0028491303 2.382401e-01 3.720939e-01 13 45378530 45378595 66 + 1.052 0.915 -0.511
ENSG00000170919 E050 6.3859364 0.0027660652 7.040661e-01 8.026671e-01 13 45378596 45378610 15 + 0.880 0.824 -0.215
ENSG00000170919 E051 12.7257776 0.0013843035 3.632191e-01 5.076509e-01 13 45378611 45378671 61 + 1.175 1.082 -0.336
ENSG00000170919 E052 4.7814536 0.0520125986 4.619492e-02 1.023953e-01 13 45378672 45379194 523 + 0.924 0.588 -1.365
ENSG00000170919 E053 12.1813321 0.0016110262 5.916058e-02 1.251946e-01 13 45379195 45379274 80 + 1.210 1.023 -0.674
ENSG00000170919 E054 10.2659118 0.0027575108 4.212054e-01 5.643368e-01 13 45379275 45379335 61 + 1.083 0.990 -0.340
ENSG00000170919 E055 1.4351498 0.0591655271 5.740679e-01 6.999276e-01 13 45379336 45379488 153 + 0.422 0.310 -0.656
ENSG00000170919 E056 4.8788571 0.0035175791 5.451849e-02 1.171495e-01 13 45379489 45379898 410 + 0.903 0.638 -1.062
ENSG00000170919 E057 0.4804688 0.0216788839 3.414435e-01 4.853385e-01 13 45379899 45379925 27 + 0.261 0.100 -1.674
ENSG00000170919 E058 2.8452334 0.0057460556 5.091509e-01 6.444954e-01 13 45379926 45380001 76 + 0.632 0.521 -0.504
ENSG00000170919 E059 1.1802960 0.0108328099 2.244330e-04 1.068134e-03 13 45381073 45381141 69 + 0.632 0.000 -15.614
ENSG00000170919 E060 0.8836079 0.0138634946 1.617370e-03 6.016171e-03 13 45381142 45381217 76 + 0.540 0.000 -15.276
ENSG00000170919 E061 3.1625324 0.0063128803 7.885322e-01 8.646180e-01 13 45382825 45383090 266 + 0.632 0.584 -0.215
ENSG00000170919 E062 7.4729037 0.0023793171 6.657153e-01 7.733539e-01 13 45383091 45383159 69 + 0.945 0.886 -0.222
ENSG00000170919 E063 9.4011101 0.0018684663 9.342270e-02 1.804677e-01 13 45383160 45383169 10 + 1.111 0.928 -0.675
ENSG00000170919 E064 8.7326073 0.0020140997 1.057789e-01 1.992803e-01 13 45383170 45383174 5 + 1.083 0.900 -0.675
ENSG00000170919 E065 15.2605061 0.0012015595 3.229549e-01 4.663148e-01 13 45383175 45383235 61 + 1.252 1.158 -0.332
ENSG00000170919 E066 10.9150213 0.0130382446 8.611551e-01 9.144339e-01 13 45383760 45383838 79 + 1.052 1.062 0.037
ENSG00000170919 E067 0.9942340 0.0147367528 7.778757e-01 8.570909e-01 13 45383839 45383843 5 + 0.261 0.307 0.325
ENSG00000170919 E068 11.3993899 0.0063117163 3.744059e-04 1.675171e-03 13 45384205 45385015 811 + 1.281 0.914 -1.329
ENSG00000170919 E069 16.0915471 0.0011954448 6.877341e-06 4.744516e-05 13 45387585 45389032 1448 + 1.423 1.043 -1.344
ENSG00000170919 E070 13.4069740 0.0065864167 2.282072e-03 8.096404e-03 13 45389033 45389734 702 + 1.317 1.021 -1.056
ENSG00000170919 E071 21.0225074 0.0012081556 1.709667e-01 2.894368e-01 13 45389735 45389793 59 + 1.262 1.359 0.341
ENSG00000170919 E072 21.5956154 0.0009016054 5.687067e-03 1.778387e-02 13 45389794 45389820 27 + 1.187 1.397 0.735
ENSG00000170919 E073 15.3887093 0.0022581141 1.906856e-01 3.146131e-01 13 45389821 45390713 893 + 1.125 1.236 0.394
ENSG00000170919 E074 17.6057574 0.0011388736 9.408428e-02 1.815162e-01 13 45390714 45390757 44 + 1.163 1.296 0.470
ENSG00000170919 E075 28.0054882 0.0007084581 7.259980e-02 1.476745e-01 13 45390758 45390858 101 + 1.366 1.479 0.390
ENSG00000170919 E076 18.4750920 0.0010354714 4.975000e-02 1.087168e-01 13 45390859 45390902 44 + 1.163 1.319 0.547
ENSG00000170919 E077 7.2209628 0.0320337363 2.038127e-01 3.309803e-01 13 45390903 45391031 129 + 0.773 0.952 0.688
ENSG00000170919 E078 72.5144505 0.0047101632 5.489819e-01 6.787731e-01 13 45391032 45392089 1058 + 1.870 1.829 -0.140
ENSG00000170919 E079 5.9875453 0.1103979225 6.060873e-01 7.263271e-01 13 45392090 45392190 101 + 0.902 0.796 -0.409
ENSG00000170919 E080 13.0210066 0.0076773605 2.407350e-01 3.750363e-01 13 45392191 45393413 1223 + 1.210 1.089 -0.431
ENSG00000170919 E081 0.0000000       13 45417500 45417975 476 +