ENSG00000170776

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000394510 ENSG00000170776 HEK293_OSMI2_2hA HEK293_TMG_2hB AKAP13 protein_coding protein_coding 7.199587 10.03764 4.9296 0.5443183 0.1935174 -1.024391 2.7543173 4.5209477 0.3982655 0.4196706 0.23930262 -3.4722333 0.32110000 0.45773333 0.08090000 -0.37683333 7.641411e-02 5.673992e-08 FALSE TRUE
ENST00000394518 ENSG00000170776 HEK293_OSMI2_2hA HEK293_TMG_2hB AKAP13 protein_coding protein_coding 7.199587 10.03764 4.9296 0.5443183 0.1935174 -1.024391 1.1516499 0.6227425 1.1361147 0.2203538 0.41734212 0.8570610 0.18831250 0.06443333 0.22763333 0.16320000 9.447561e-02 5.673992e-08 FALSE TRUE
ENST00000558644 ENSG00000170776 HEK293_OSMI2_2hA HEK293_TMG_2hB AKAP13 protein_coding retained_intron 7.199587 10.03764 4.9296 0.5443183 0.1935174 -1.024391 0.1421901 0.0000000 0.2827125 0.0000000 0.28271255 4.8714127 0.02607917 0.00000000 0.05526667 0.05526667 7.204119e-01 5.673992e-08 FALSE TRUE
ENST00000559391 ENSG00000170776 HEK293_OSMI2_2hA HEK293_TMG_2hB AKAP13 protein_coding retained_intron 7.199587 10.03764 4.9296 0.5443183 0.1935174 -1.024391 0.3403135 0.1940133 0.2218200 0.1034622 0.05929361 0.1843422 0.05033333 0.01860000 0.04460000 0.02600000 4.592985e-01 5.673992e-08   FALSE
ENST00000560185 ENSG00000170776 HEK293_OSMI2_2hA HEK293_TMG_2hB AKAP13 protein_coding processed_transcript 7.199587 10.03764 4.9296 0.5443183 0.1935174 -1.024391 0.8307956 3.7924106 0.0000000 1.2554547 0.00000000 -8.5707705 0.08565417 0.36620000 0.00000000 -0.36620000 5.673992e-08 5.673992e-08   FALSE
ENST00000560579 ENSG00000170776 HEK293_OSMI2_2hA HEK293_TMG_2hB AKAP13 protein_coding protein_coding 7.199587 10.03764 4.9296 0.5443183 0.1935174 -1.024391 0.2330257 0.0000000 0.5528206 0.0000000 0.29575232 5.8146033 0.04291250 0.00000000 0.11316667 0.11316667 1.190733e-01 5.673992e-08 FALSE TRUE
MSTRG.11463.4 ENSG00000170776 HEK293_OSMI2_2hA HEK293_TMG_2hB AKAP13 protein_coding   7.199587 10.03764 4.9296 0.5443183 0.1935174 -1.024391 1.5209949 0.8179663 2.1849742 0.1763871 0.47740790 1.4065601 0.24957083 0.08376667 0.44793333 0.36416667 1.878680e-03 5.673992e-08 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000170776 E001 0.0000000       15 85380571 85380586 16 +      
ENSG00000170776 E002 0.0000000       15 85380587 85380594 8 +      
ENSG00000170776 E003 0.0000000       15 85380595 85380595 1 +      
ENSG00000170776 E004 0.4418608 0.0260786607 5.512803e-02 1.182179e-01 15 85380596 85380602 7 + 0.310 0.000 -12.140
ENSG00000170776 E005 1.6253765 0.0587269048 3.537313e-02 8.236948e-02 15 85380603 85380616 14 + 0.577 0.208 -2.176
ENSG00000170776 E006 3.0302513 0.0051043882 2.285704e-03 8.107162e-03 15 85380617 85380625 9 + 0.793 0.346 -2.094
ENSG00000170776 E007 3.8773380 0.0044882776 2.596692e-03 9.056083e-03 15 85380626 85380639 14 + 0.861 0.452 -1.772
ENSG00000170776 E008 6.0980784 0.0056965468 3.676897e-04 1.649171e-03 15 85380640 85380728 89 + 1.031 0.608 -1.672
ENSG00000170776 E009 4.9616930 0.0086153644 3.473222e-05 2.032532e-04 15 85380729 85380755 27 + 1.002 0.452 -2.304
ENSG00000170776 E010 6.9837903 0.0207099583 1.270379e-05 8.241257e-05 15 85380756 85380798 43 + 1.131 0.574 -2.186
ENSG00000170776 E011 0.1472490 0.0430433927 3.962851e-01   15 85381687 85382170 484 + 0.129 0.000 -12.916
ENSG00000170776 E012 0.2987644 0.0271207746 1.458362e-01   15 85480873 85481026 154 + 0.229 0.000 -14.058
ENSG00000170776 E013 7.9395285 0.0453325025 9.454889e-04 3.773093e-03 15 85485710 85485753 44 + 1.142 0.699 -1.684
ENSG00000170776 E014 13.7620128 0.0460686462 2.799699e-05 1.676819e-04 15 85521428 85521575 148 + 1.386 0.857 -1.912
ENSG00000170776 E015 18.6619489 0.0010589503 3.215556e-10 5.208425e-09 15 85533584 85533880 297 + 1.494 1.032 -1.631
ENSG00000170776 E016 2.8637811 0.0056051667 4.597339e-01 5.998456e-01 15 85533881 85536997 3117 + 0.489 0.639 0.686
ENSG00000170776 E017 14.7792453 0.1427441057 1.418373e-02 3.864334e-02 15 85543772 85543955 184 + 1.365 0.995 -1.321
ENSG00000170776 E018 0.0000000       15 85544040 85544143 104 +      
ENSG00000170776 E019 0.0000000       15 85555446 85555491 46 +      
ENSG00000170776 E020 18.1073726 0.0010265607 8.337036e-12 1.758044e-10 15 85575131 85575329 199 + 1.499 0.979 -1.840
ENSG00000170776 E021 192.4176794 0.0033690664 1.968827e-35 4.939338e-33 15 85578930 85582107 3178 + 2.468 2.062 -1.357
ENSG00000170776 E022 0.0000000       15 85582910 85583164 255 +      
ENSG00000170776 E023 21.7833860 0.0008305764 2.093497e-04 1.003940e-03 15 85585702 85585823 122 + 1.470 1.242 -0.791
ENSG00000170776 E024 0.0000000       15 85619696 85619949 254 +      
ENSG00000170776 E025 0.0000000       15 85619950 85620172 223 +      
ENSG00000170776 E026 0.0000000       15 85635097 85635105 9 +      
ENSG00000170776 E027 18.9652301 0.0009690147 2.964810e-03 1.015870e-02 15 85639374 85639449 76 + 1.391 1.203 -0.661
ENSG00000170776 E028 18.5243011 0.0010090984 5.279120e-03 1.669137e-02 15 85645818 85645918 101 + 1.379 1.202 -0.618
ENSG00000170776 E029 12.1967980 0.0023083279 3.895964e-05 2.251888e-04 15 85645919 85645954 36 + 1.288 0.935 -1.273
ENSG00000170776 E030 45.4996474 0.0019080594 1.775653e-06 1.396803e-05 15 85655417 85655787 371 + 1.774 1.557 -0.735
ENSG00000170776 E031 6.9437416 0.0028704537 5.174929e-02 1.122712e-01 15 85658537 85658590 54 + 1.001 0.812 -0.720
ENSG00000170776 E032 0.5546650 0.0197581294 7.076727e-01 8.055165e-01 15 85662388 85662453 66 + 0.130 0.207 0.814
ENSG00000170776 E033 33.4427160 0.0020087877 5.808743e-05 3.220795e-04 15 85664563 85664755 193 + 1.641 1.435 -0.705
ENSG00000170776 E034 28.7362522 0.0084707890 4.084726e-05 2.349524e-04 15 85669722 85669830 109 + 1.605 1.332 -0.939
ENSG00000170776 E035 0.4031496 0.0242784512 2.680015e-01 4.063944e-01 15 85677037 85677098 62 + 0.000 0.207 12.968
ENSG00000170776 E036 17.0577418 0.0070755153 1.166382e-03 4.526725e-03 15 85682158 85682167 10 + 1.379 1.130 -0.874
ENSG00000170776 E037 19.5745851 0.0226273466 3.074357e-02 7.340816e-02 15 85682168 85682212 45 + 1.403 1.221 -0.634
ENSG00000170776 E038 0.1817044 0.0383660624 5.963930e-01   15 85683527 85683612 86 + 0.000 0.116 11.864
ENSG00000170776 E039 0.2214452 0.0402937623 5.937392e-01   15 85684422 85684740 319 + 0.000 0.116 11.852
ENSG00000170776 E040 25.7227838 0.0015853567 2.837975e-04 1.313991e-03 15 85684741 85684873 133 + 1.527 1.319 -0.719
ENSG00000170776 E041 0.0000000       15 85684874 85685446 573 +      
ENSG00000170776 E042 0.2214452 0.0402937623 5.937392e-01   15 85689869 85690104 236 + 0.000 0.116 11.852
ENSG00000170776 E043 0.0000000       15 85693099 85693276 178 +      
ENSG00000170776 E044 30.0065983 0.0017587555 3.849636e-02 8.827184e-02 15 85693277 85693451 175 + 1.536 1.445 -0.313
ENSG00000170776 E045 18.9929437 0.0010062997 9.784086e-01 9.906458e-01 15 85708019 85708086 68 + 1.272 1.312 0.139
ENSG00000170776 E046 0.0000000       15 85710443 85710578 136 +      
ENSG00000170776 E047 12.1864508 0.0014241869 5.944594e-01 7.166948e-01 15 85710579 85710581 3 + 1.058 1.150 0.331
ENSG00000170776 E048 21.7253104 0.0012294622 9.079229e-01 9.455565e-01 15 85710582 85710645 64 + 1.332 1.366 0.119
ENSG00000170776 E049 30.5288717 0.0008301617 1.177510e-01 2.167215e-01 15 85715788 85715923 136 + 1.527 1.472 -0.189
ENSG00000170776 E050 0.1482932 0.0421618089 5.958316e-01   15 85717152 85717289 138 + 0.000 0.115 11.832
ENSG00000170776 E051 30.1750604 0.0110570089 3.086931e-02 7.366291e-02 15 85717290 85717402 113 + 1.562 1.433 -0.444
ENSG00000170776 E052 7.7409578 0.0380304530 9.863375e-02 1.884112e-01 15 85718007 85718012 6 + 1.045 0.848 -0.740
ENSG00000170776 E053 35.9957468 0.0005901596 4.691868e-03 1.507412e-02 15 85718013 85718159 147 + 1.627 1.506 -0.411
ENSG00000170776 E054 0.0000000       15 85718801 85718875 75 +      
ENSG00000170776 E055 33.5412446 0.0006136721 3.859622e-01 5.301694e-01 15 85719076 85719211 136 + 1.536 1.527 -0.032
ENSG00000170776 E056 34.5352442 0.0006409978 1.477513e-01 2.586339e-01 15 85719212 85719326 115 + 1.566 1.523 -0.146
ENSG00000170776 E057 38.2415233 0.0034270844 7.126174e-02 1.454259e-01 15 85721991 85722116 126 + 1.623 1.558 -0.223
ENSG00000170776 E058 0.0000000       15 85722117 85722229 113 +      
ENSG00000170776 E059 38.1386153 0.0168446881 1.041722e-01 1.968531e-01 15 85722230 85722347 118 + 1.634 1.552 -0.279
ENSG00000170776 E060 71.9089789 0.0156228066 2.209902e-01 3.516185e-01 15 85723072 85723320 249 + 1.873 1.843 -0.103
ENSG00000170776 E061 39.4597537 0.0056570626 1.479975e-01 2.589536e-01 15 85726410 85726486 77 + 1.623 1.574 -0.166
ENSG00000170776 E062 57.2811823 0.0125371605 8.823986e-01 9.287047e-01 15 85727066 85727247 182 + 1.736 1.774 0.128
ENSG00000170776 E063 38.9094467 0.0014018875 7.055063e-01 8.038543e-01 15 85727381 85727463 83 + 1.553 1.619 0.225
ENSG00000170776 E064 56.0490547 0.0016128329 7.152070e-01 8.111897e-01 15 85730513 85730707 195 + 1.731 1.757 0.090
ENSG00000170776 E065 49.1790202 0.0006273729 5.336903e-01 6.658415e-01 15 85734992 85735150 159 + 1.648 1.723 0.256
ENSG00000170776 E066 30.1084019 0.0012866260 1.789678e-01 2.998573e-01 15 85735560 85735598 39 + 1.403 1.535 0.452
ENSG00000170776 E067 28.6202203 0.0009845969 1.202026e-01 2.202877e-01 15 85735599 85735630 32 + 1.373 1.519 0.504
ENSG00000170776 E068 23.6848548 0.0018924166 8.128719e-01 8.813594e-01 15 85736090 85736134 45 + 1.346 1.405 0.204
ENSG00000170776 E069 22.8879690 0.0010147321 7.573172e-01 8.421961e-01 15 85740222 85740272 51 + 1.353 1.373 0.068
ENSG00000170776 E070 1.9196710 0.0594308779 7.232169e-01 8.170850e-01 15 85740273 85740562 290 + 0.489 0.450 -0.195
ENSG00000170776 E071 72.7708709 0.0047962287 5.487926e-01 6.786178e-01 15 85741046 85741495 450 + 1.848 1.863 0.051
ENSG00000170776 E072 54.7572812 0.0007448489 1.603754e-01 2.756420e-01 15 85743492 85743825 334 + 1.750 1.726 -0.082
ENSG00000170776 E073 495.7316220 0.0012907105 7.494331e-13 1.876773e-11 15 85744628 85747603 2976 + 2.567 2.760 0.643
ENSG00000170776 E074 98.3038652 0.0029903750 2.985404e-10 4.860569e-09 15 85747604 85747809 206 + 1.768 2.099 1.113
ENSG00000170776 E075 280.0253429 0.0078056973 3.919625e-18 2.005296e-16 15 85747810 85748751 942 + 2.136 2.579 1.477
ENSG00000170776 E076 146.1299959 0.0179338386 3.456191e-16 1.388096e-14 15 85748752 85749358 607 + 1.687 2.334 2.175