ENSG00000168014

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000334126 ENSG00000168014 HEK293_OSMI2_2hA HEK293_TMG_2hB C2CD3 protein_coding protein_coding 10.43023 12.54931 7.577367 0.3941614 0.3876474 -0.7270857 1.976247 1.7475382 1.76555515 0.2408522 0.89570056 0.0147141 0.2018958 0.1383667 0.245833333 0.10746667 9.818822e-01 6.426648e-14 FALSE TRUE
ENST00000538625 ENSG00000168014 HEK293_OSMI2_2hA HEK293_TMG_2hB C2CD3 protein_coding processed_transcript 10.43023 12.54931 7.577367 0.3941614 0.3876474 -0.7270857 1.970719 4.2047428 0.05378979 0.2037396 0.05378979 -6.0459753 0.1595333 0.3360667 0.006466667 -0.32960000 6.426648e-14 6.426648e-14 FALSE TRUE
ENST00000539061 ENSG00000168014 HEK293_OSMI2_2hA HEK293_TMG_2hB C2CD3 protein_coding protein_coding 10.43023 12.54931 7.577367 0.3941614 0.3876474 -0.7270857 2.266589 3.0588936 1.71513610 0.3205227 0.22929579 -0.8310084 0.2191750 0.2445667 0.224700000 -0.01986667 8.836338e-01 6.426648e-14 FALSE TRUE
ENST00000681291 ENSG00000168014 HEK293_OSMI2_2hA HEK293_TMG_2hB C2CD3 protein_coding nonsense_mediated_decay 10.43023 12.54931 7.577367 0.3941614 0.3876474 -0.7270857 1.536026 0.3930342 1.96858894 0.3930342 0.55616773 2.2954977 0.1561000 0.0316000 0.253866667 0.22226667 5.722769e-02 6.426648e-14 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000168014 E001 4.3575095 0.0040858690 5.736568e-02 1.221041e-01 11 74012718 74012731 14 - 0.513 0.803 1.247
ENSG00000168014 E002 5.0228893 0.0164734667 8.861308e-03 2.593583e-02 11 74012732 74012734 3 - 0.459 0.875 1.790
ENSG00000168014 E003 6.8694188 0.0125370432 2.228311e-03 7.930620e-03 11 74012735 74012736 2 - 0.560 1.001 1.778
ENSG00000168014 E004 6.8694188 0.0125370432 2.228311e-03 7.930620e-03 11 74012737 74012737 1 - 0.560 1.001 1.778
ENSG00000168014 E005 7.1660052 0.0181700464 1.606516e-03 5.982184e-03 11 74012738 74012744 7 - 0.560 1.025 1.863
ENSG00000168014 E006 6.8629744 0.0037540309 7.665038e-05 4.121824e-04 11 74012745 74012749 5 - 0.459 1.024 2.349
ENSG00000168014 E007 16.1966478 0.0015480227 1.501671e-08 1.791367e-07 11 74012750 74012773 24 - 0.797 1.372 2.098
ENSG00000168014 E008 14.9538751 0.0022865838 2.734645e-07 2.550814e-06 11 74012774 74012774 1 - 0.797 1.333 1.965
ENSG00000168014 E009 126.0690618 0.0011403676 1.577909e-15 5.814630e-14 11 74012775 74013270 496 - 1.882 2.185 1.016
ENSG00000168014 E010 81.7587536 0.0006361660 2.300884e-08 2.651917e-07 11 74013271 74013443 173 - 1.738 1.983 0.825
ENSG00000168014 E011 62.0406063 0.0017080044 1.396950e-05 8.974159e-05 11 74013444 74013525 82 - 1.635 1.862 0.770
ENSG00000168014 E012 3.9416004 0.0094457183 8.682049e-02 1.703036e-01 11 74016599 74016801 203 - 0.513 0.782 1.165
ENSG00000168014 E013 58.5263958 0.0005566687 1.062381e-05 7.018095e-05 11 74028287 74028393 107 - 1.615 1.838 0.755
ENSG00000168014 E014 27.2677981 0.0036453983 1.010648e-02 2.902424e-02 11 74028394 74028398 5 - 1.313 1.511 0.687
ENSG00000168014 E015 0.3030308 0.3921325362 2.121519e-01   11 74029752 74030248 497 - 0.244 0.000 -12.740
ENSG00000168014 E016 0.1515154 0.0431239711 3.677893e-01   11 74033313 74033350 38 - 0.139 0.000 -12.895
ENSG00000168014 E017 217.7150773 0.0045214555 2.078802e-05 1.284400e-04 11 74033351 74034278 928 - 2.212 2.388 0.585
ENSG00000168014 E018 0.0000000       11 74034432 74034433 2 -      
ENSG00000168014 E019 0.0000000       11 74034434 74034441 8 -      
ENSG00000168014 E020 0.2965864 0.2401146302 3.623559e-01   11 74034442 74034567 126 - 0.000 0.190 11.789
ENSG00000168014 E021 0.2965864 0.2401146302 3.623559e-01   11 74034568 74034608 41 - 0.000 0.190 11.789
ENSG00000168014 E022 0.0000000       11 74036128 74036484 357 -      
ENSG00000168014 E023 66.3929747 0.0004118591 2.108615e-02 5.377904e-02 11 74037478 74037623 146 - 1.747 1.857 0.371
ENSG00000168014 E024 39.0696606 0.0006445800 2.324734e-01 3.653856e-01 11 74037624 74037652 29 - 1.537 1.613 0.259
ENSG00000168014 E025 38.3157902 0.0005913023 6.169874e-01 7.349043e-01 11 74037653 74037698 46 - 1.556 1.592 0.122
ENSG00000168014 E026 0.0000000       11 74038975 74042053 3079 -      
ENSG00000168014 E027 64.8423260 0.0031203363 1.753699e-01 2.951482e-01 11 74042054 74042218 165 - 1.753 1.830 0.261
ENSG00000168014 E028 0.0000000       11 74046670 74048204 1535 -      
ENSG00000168014 E029 48.7212414 0.0054996760 5.566664e-01 6.852600e-01 11 74048205 74048338 134 - 1.657 1.701 0.151
ENSG00000168014 E030 56.7650731 0.0004508010 7.926862e-02 1.583442e-01 11 74049337 74049542 206 - 1.688 1.779 0.310
ENSG00000168014 E031 1.2899030 0.0282316427 7.888951e-01 8.648747e-01 11 74049543 74054023 4481 - 0.328 0.381 0.317
ENSG00000168014 E032 37.2067472 0.0055884251 5.852276e-01 7.089693e-01 11 74054607 74054671 65 - 1.537 1.581 0.149
ENSG00000168014 E033 0.3697384 0.0249930883 2.940768e-01 4.351647e-01 11 74056892 74057405 514 - 0.000 0.194 12.613
ENSG00000168014 E034 46.1669281 0.0005485732 9.298244e-01 9.598176e-01 11 74057406 74057544 139 - 1.649 1.661 0.040
ENSG00000168014 E035 1.6930395 0.0080115637 4.230140e-01 5.661394e-01 11 74069648 74069912 265 - 0.328 0.473 0.806
ENSG00000168014 E036 0.1451727 0.0431865326 3.681993e-01   11 74070506 74070874 369 - 0.139 0.000 -12.894
ENSG00000168014 E037 58.6990922 0.0004428255 4.447157e-01 5.862750e-01 11 74074253 74074505 253 - 1.732 1.775 0.145
ENSG00000168014 E038 35.7091654 0.0037868035 6.068130e-01 7.268841e-01 11 74074506 74074600 95 - 1.523 1.563 0.139
ENSG00000168014 E039 103.3257248 0.0002741935 1.555466e-01 2.691267e-01 11 74078115 74078717 603 - 2.029 1.987 -0.142
ENSG00000168014 E040 28.5081543 0.0007306398 3.843912e-04 1.714341e-03 11 74084881 74084970 90 - 1.578 1.356 -0.764
ENSG00000168014 E041 0.6589510 0.0200196160 4.757954e-01 6.144754e-01 11 74085522 74085617 96 - 0.139 0.266 1.168
ENSG00000168014 E042 50.8010587 0.0004932441 1.928203e-05 1.200553e-04 11 74085618 74085886 269 - 1.812 1.610 -0.685
ENSG00000168014 E043 34.5342771 0.0006258397 9.778574e-03 2.821712e-02 11 74090813 74090936 124 - 1.619 1.473 -0.498
ENSG00000168014 E044 0.0000000       11 74091298 74091364 67 -      
ENSG00000168014 E045 39.9178826 0.0005353051 4.907483e-05 2.770781e-04 11 74092416 74092588 173 - 1.717 1.501 -0.735
ENSG00000168014 E046 0.0000000       11 74093547 74093815 269 -      
ENSG00000168014 E047 35.6176355 0.0024342339 1.324801e-03 5.058922e-03 11 74093816 74093999 184 - 1.653 1.462 -0.654
ENSG00000168014 E048 29.7828945 0.0041242076 8.609595e-04 3.476780e-03 11 74095228 74095408 181 - 1.599 1.377 -0.762
ENSG00000168014 E049 38.4635669 0.0005885895 5.151726e-04 2.216170e-03 11 74098009 74098255 247 - 1.691 1.505 -0.635
ENSG00000168014 E050 21.6663484 0.0008864019 3.370781e-03 1.135261e-02 11 74100525 74100608 84 - 1.460 1.253 -0.719
ENSG00000168014 E051 17.0656318 0.0010466750 2.063294e-03 7.421255e-03 11 74100609 74100676 68 - 1.379 1.136 -0.855
ENSG00000168014 E052 59.4127592 0.0049258813 2.795651e-09 3.818513e-08 11 74103131 74103625 495 - 1.934 1.610 -1.097
ENSG00000168014 E053 19.6423915 0.0110204644 6.224918e-03 1.920609e-02 11 74106371 74106489 119 - 1.436 1.201 -0.823
ENSG00000168014 E054 11.2916505 0.0015703716 8.388525e-02 1.656311e-01 11 74106490 74106493 4 - 1.173 1.013 -0.582
ENSG00000168014 E055 0.1451727 0.0431865326 3.681993e-01   11 74107409 74107875 467 - 0.139 0.000 -12.894
ENSG00000168014 E056 0.7697675 0.0452090404 4.761640e-01 6.148330e-01 11 74107876 74108143 268 - 0.139 0.267 1.179
ENSG00000168014 E057 22.5183892 0.0008595723 2.852265e-02 6.906264e-02 11 74109034 74109152 119 - 1.448 1.298 -0.520
ENSG00000168014 E058 0.0000000       11 74109153 74109492 340 -      
ENSG00000168014 E059 0.1817044 0.0398968705 6.372153e-01   11 74110523 74110588 66 - 0.000 0.108 11.540
ENSG00000168014 E060 1.4318535 0.0239641131 5.935190e-01 7.159027e-01 11 74113201 74113779 579 - 0.328 0.429 0.579
ENSG00000168014 E061 21.3447586 0.0129479487 7.463110e-03 2.241986e-02 11 74113780 74113892 113 - 1.471 1.237 -0.813
ENSG00000168014 E062 31.7668399 0.0006589665 2.424974e-06 1.852193e-05 11 74114384 74114593 210 - 1.657 1.377 -0.959
ENSG00000168014 E063 30.3864603 0.0006813077 2.044808e-04 9.831800e-04 11 74118228 74118382 155 - 1.607 1.382 -0.772
ENSG00000168014 E064 24.5727702 0.0281631868 1.326981e-03 5.065438e-03 11 74122988 74123135 148 - 1.564 1.237 -1.132
ENSG00000168014 E065 1.9542256 0.0187294048 3.092044e-01 4.514710e-01 11 74128054 74128577 524 - 0.328 0.513 1.002
ENSG00000168014 E066 37.2655318 0.0256851367 1.804795e-03 6.614301e-03 11 74128578 74129173 596 - 1.343 1.664 1.102
ENSG00000168014 E067 50.5157738 0.0133988483 1.807454e-02 4.728925e-02 11 74129174 74129792 619 - 1.573 1.759 0.630
ENSG00000168014 E068 4.2893790 0.0238059697 5.335548e-01 6.657338e-01 11 74129793 74129842 50 - 0.642 0.743 0.422
ENSG00000168014 E069 5.2577922 0.0040553327 7.673045e-01 8.495723e-01 11 74129843 74129972 130 - 0.797 0.763 -0.134
ENSG00000168014 E070 7.5998184 0.0293054942 2.280737e-01 3.601227e-01 11 74131868 74132843 976 - 1.001 0.844 -0.591
ENSG00000168014 E071 55.9231319 0.0004584513 4.670938e-03 1.501426e-02 11 74132844 74132972 129 - 1.815 1.689 -0.424
ENSG00000168014 E072 59.6030017 0.0004315227 2.615473e-02 6.425968e-02 11 74133425 74133557 133 - 1.822 1.728 -0.319
ENSG00000168014 E073 0.0000000       11 74133558 74133630 73 -      
ENSG00000168014 E074 0.3729606 0.0318481456 8.264082e-01 8.907641e-01 11 74137058 74138719 1662 - 0.139 0.108 -0.413
ENSG00000168014 E075 74.5082091 0.0051125056 1.052694e-02 3.003956e-02 11 74138720 74138967 248 - 1.936 1.810 -0.425
ENSG00000168014 E076 62.9974027 0.0034247613 1.478431e-02 4.000805e-02 11 74139605 74139817 213 - 1.860 1.741 -0.402
ENSG00000168014 E077 22.4698640 0.0008457544 2.936353e-02 7.070468e-02 11 74139818 74139828 11 - 1.442 1.292 -0.521
ENSG00000168014 E078 4.5858808 0.0863585661 8.276561e-01 8.916569e-01 11 74158327 74158694 368 - 0.769 0.734 -0.140
ENSG00000168014 E079 26.0973720 0.0008053551 2.714968e-01 4.102661e-01 11 74161399 74161433 35 - 1.460 1.392 -0.233
ENSG00000168014 E080 37.3336022 0.0006428763 3.906206e-02 8.931279e-02 11 74161434 74161556 123 - 1.635 1.524 -0.378
ENSG00000168014 E081 0.2965864 0.2401146302 3.623559e-01   11 74164810 74164876 67 - 0.000 0.190 11.789
ENSG00000168014 E082 0.2966881 0.0270754081 1.305866e-01   11 74168014 74168232 219 - 0.243 0.000 -14.005
ENSG00000168014 E083 0.2924217 0.0272087573 1.306060e-01   11 74168233 74168343 111 - 0.243 0.000 -14.004
ENSG00000168014 E084 65.6866773 0.0004106276 1.677458e-04 8.254911e-04 11 74168344 74168613 270 - 1.901 1.746 -0.523
ENSG00000168014 E085 36.7343600 0.0212013781 2.651245e-01 4.031549e-01 11 74170738 74171029 292 - 1.619 1.530 -0.301
ENSG00000168014 E086 1.4171033 0.9326417359 6.618034e-01 7.702027e-01 11 74171030 74171210 181 - 0.138 0.478 2.421