ENSG00000167986

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000301764 ENSG00000167986 HEK293_OSMI2_2hA HEK293_TMG_2hB DDB1 protein_coding protein_coding 252.8842 388.6936 169.9747 15.2237 2.367619 -1.193266 207.93606 278.71640 146.2837186 37.89402 1.5841185 -0.9299819 0.84149583 0.7160333 0.8607000000 0.1446667 3.356930e-01 4.28206e-30 FALSE TRUE
ENST00000451943 ENSG00000167986 HEK293_OSMI2_2hA HEK293_TMG_2hB DDB1 protein_coding retained_intron 252.8842 388.6936 169.9747 15.2237 2.367619 -1.193266 11.53490 42.42579 0.1320046 23.14603 0.1320046 -8.2232004 0.03115417 0.1096333 0.0007666667 -0.1088667 1.253898e-02 4.28206e-30 FALSE TRUE
ENST00000680717 ENSG00000167986 HEK293_OSMI2_2hA HEK293_TMG_2hB DDB1 protein_coding protein_coding 252.8842 388.6936 169.9747 15.2237 2.367619 -1.193266 17.58706 49.20613 3.5960220 10.52119 0.7695458 -3.7706510 0.05658750 0.1270000 0.0212000000 -0.1058000 1.481252e-05 4.28206e-30 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000167986 E001 22.7977530 2.419802e-02 1.048782e-06 8.664224e-06 11 61299451 61299454 4 - 0.745 1.425 2.492
ENSG00000167986 E002 35.6771082 1.533939e-02 1.318265e-07 1.308986e-06 11 61299455 61299462 8 - 1.026 1.603 2.024
ENSG00000167986 E003 35.8222809 1.556809e-02 3.073587e-07 2.837077e-06 11 61299463 61299463 1 - 1.046 1.603 1.950
ENSG00000167986 E004 52.4237647 1.674135e-02 1.362940e-07 1.349385e-06 11 61299464 61299469 6 - 1.235 1.760 1.805
ENSG00000167986 E005 999.0494756 3.386682e-03 9.730695e-16 3.678808e-14 11 61299470 61299555 86 - 2.721 2.997 0.915
ENSG00000167986 E006 1654.7483610 3.949260e-03 4.157430e-23 3.730993e-21 11 61299556 61299603 48 - 2.880 3.225 1.146
ENSG00000167986 E007 1943.2075212 4.715196e-03 3.206715e-21 2.357402e-19 11 61299604 61299680 77 - 2.943 3.296 1.172
ENSG00000167986 E008 2391.0674859 6.140891e-03 4.174045e-15 1.452535e-13 11 61299681 61299780 100 - 3.055 3.382 1.088
ENSG00000167986 E009 4210.0089657 2.876146e-03 3.458182e-17 1.573348e-15 11 61299781 61300050 270 - 3.376 3.614 0.793
ENSG00000167986 E010 1551.7970592 3.616234e-03 2.866266e-08 3.239696e-07 11 61300051 61300070 20 - 2.983 3.173 0.632
ENSG00000167986 E011 3337.9589016 3.519121e-03 2.791251e-09 3.813053e-08 11 61300071 61300219 149 - 3.315 3.505 0.633
ENSG00000167986 E012 7.8037536 2.260356e-03 7.098340e-01 8.071149e-01 11 61300220 61300808 589 - 0.850 0.909 0.228
ENSG00000167986 E013 3182.1687934 2.624842e-03 9.704073e-10 1.442454e-08 11 61300809 61300932 124 - 3.309 3.481 0.572
ENSG00000167986 E014 8.0590975 3.307497e-02 1.824190e-02 4.765604e-02 11 61300933 61300936 4 - 1.119 0.817 -1.129
ENSG00000167986 E015 20.1415533 1.072359e-03 1.997537e-05 1.239312e-04 11 61300937 61301711 775 - 1.482 1.164 -1.110
ENSG00000167986 E016 12.6200698 2.045524e-03 3.205793e-04 1.463112e-03 11 61301712 61302256 545 - 1.295 0.962 -1.197
ENSG00000167986 E017 2972.0717749 1.673614e-03 1.511097e-10 2.585789e-09 11 61302257 61302359 103 - 3.298 3.447 0.498
ENSG00000167986 E018 20.0350203 1.950972e-03 4.643533e-11 8.667029e-10 11 61302360 61302580 221 - 1.573 1.075 -1.743
ENSG00000167986 E019 9.0001502 1.910927e-03 2.251124e-04 1.070803e-03 11 61302581 61302581 1 - 1.195 0.809 -1.431
ENSG00000167986 E020 3356.2243170 6.454086e-04 3.410271e-19 1.985450e-17 11 61302582 61302751 170 - 3.358 3.498 0.467
ENSG00000167986 E021 9.5855843 2.672692e-02 5.521385e-03 1.734245e-02 11 61302752 61303045 294 - 1.196 0.850 -1.273
ENSG00000167986 E022 2428.1302427 2.965960e-04 6.999348e-24 6.859832e-22 11 61303046 61303155 110 - 3.223 3.357 0.444
ENSG00000167986 E023 18.4584480 1.008511e-03 2.370569e-02 5.920703e-02 11 61303156 61303581 426 - 1.357 1.183 -0.613
ENSG00000167986 E024 1.7243639 1.028028e-02 1.801864e-02 4.717233e-02 11 61303751 61303864 114 - 0.657 0.264 -2.081
ENSG00000167986 E025 3192.8717016 1.974434e-04 1.556533e-16 6.549988e-15 11 61303865 61304035 171 - 3.372 3.467 0.316
ENSG00000167986 E026 2442.3819019 1.213559e-04 2.001313e-07 1.917089e-06 11 61308983 61309077 95 - 3.280 3.345 0.214
ENSG00000167986 E027 1325.5325027 6.152958e-05 3.150443e-01 4.578027e-01 11 61309796 61309808 13 - 3.045 3.070 0.085
ENSG00000167986 E028 1565.2068480 2.731115e-04 1.048502e-01 1.978659e-01 11 61309809 61309861 53 - 3.109 3.144 0.115
ENSG00000167986 E029 2172.1847265 3.304754e-04 1.927733e-01 3.172502e-01 11 61309862 61309960 99 - 3.255 3.284 0.097
ENSG00000167986 E030 8.7712520 2.401430e-03 4.830753e-02 1.061746e-01 11 61309961 61309979 19 - 1.084 0.874 -0.779
ENSG00000167986 E031 1075.4187984 7.293164e-04 2.853813e-01 4.256991e-01 11 61310295 61310295 1 - 2.948 2.980 0.108
ENSG00000167986 E032 2048.7027374 4.503406e-04 2.375584e-02 5.931275e-02 11 61310296 61310418 123 - 3.219 3.263 0.146
ENSG00000167986 E033 6.5791713 3.051790e-03 2.808744e-03 9.700797e-03 11 61310419 61311349 931 - 1.066 0.715 -1.346
ENSG00000167986 E034 1971.6290139 4.935667e-04 5.971542e-01 7.189782e-01 11 61311784 61311895 112 - 3.220 3.241 0.068
ENSG00000167986 E035 2042.6515101 6.083961e-05 6.020358e-05 3.324313e-04 11 61311989 61312084 96 - 3.269 3.245 -0.078
ENSG00000167986 E036 1619.8707328 1.104514e-04 6.992109e-07 6.004960e-06 11 61313499 61313537 39 - 3.180 3.140 -0.132
ENSG00000167986 E037 2500.5885346 2.535188e-04 9.113692e-11 1.619512e-09 11 61313538 61313672 135 - 3.380 3.323 -0.188
ENSG00000167986 E038 1433.4640040 2.067081e-04 2.571953e-13 6.899586e-12 11 61313673 61313706 34 - 3.153 3.077 -0.252
ENSG00000167986 E039 12.6250501 5.322729e-03 1.813229e-02 4.741350e-02 11 61313707 61313859 153 - 1.235 1.009 -0.814
ENSG00000167986 E040 4.4254422 8.889112e-03 2.742742e-02 6.686023e-02 11 61313860 61313861 2 - 0.880 0.571 -1.270
ENSG00000167986 E041 1959.2248249 6.567626e-04 4.301183e-05 2.461325e-04 11 61313862 61313967 106 - 3.268 3.220 -0.160
ENSG00000167986 E042 858.4704912 3.513230e-03 3.151459e-02 7.490833e-02 11 61313968 61313969 2 - 2.913 2.861 -0.173
ENSG00000167986 E043 831.0317233 3.375393e-03 3.063671e-02 7.320836e-02 11 61314047 61314047 1 - 2.899 2.845 -0.179
ENSG00000167986 E044 2488.6001918 7.280555e-04 3.452397e-09 4.632056e-08 11 61314048 61314202 155 - 3.391 3.316 -0.250
ENSG00000167986 E045 1025.4287926 7.919227e-05 4.185014e-10 6.647424e-09 11 61314203 61314210 8 - 3.000 2.935 -0.217
ENSG00000167986 E046 12.9281527 5.830487e-02 1.227057e-03 4.732523e-03 11 61314211 61314261 51 - 1.386 0.923 -1.659
ENSG00000167986 E047 7.0156249 1.720674e-02 9.437618e-07 7.871482e-06 11 61314262 61314307 46 - 1.222 0.614 -2.332
ENSG00000167986 E048 1326.4328098 3.223098e-04 4.628960e-10 7.288418e-09 11 61314308 61314337 30 - 3.116 3.045 -0.236
ENSG00000167986 E049 1978.9334738 3.809327e-04 1.002768e-10 1.768656e-09 11 61314338 61314452 115 - 3.288 3.219 -0.228
ENSG00000167986 E050 1307.6359386 1.028459e-03 5.237206e-05 2.936205e-04 11 61314453 61314486 34 - 3.103 3.040 -0.209
ENSG00000167986 E051 14.3661511 7.281635e-03 1.791895e-08 2.107719e-07 11 61314487 61314883 397 - 1.452 0.931 -1.861
ENSG00000167986 E052 3.0979924 5.044033e-03 2.687924e-06 2.033704e-05 11 61314884 61314928 45 - 0.959 0.264 -3.274
ENSG00000167986 E053 8.1643526 2.649881e-03 3.575833e-04 1.609367e-03 11 61314929 61315331 403 - 1.166 0.780 -1.444
ENSG00000167986 E054 6.0912018 2.180030e-02 5.538316e-03 1.738727e-02 11 61315332 61315523 192 - 1.046 0.677 -1.431
ENSG00000167986 E055 15.4047355 2.706464e-02 1.214407e-07 1.214068e-06 11 61315524 61316280 757 - 1.511 0.919 -2.106
ENSG00000167986 E056 2.9226413 5.346796e-03 9.985701e-04 3.953193e-03 11 61316281 61316284 4 - 0.850 0.353 -2.273
ENSG00000167986 E057 1951.6235081 1.432356e-03 1.361242e-05 8.765767e-05 11 61316285 61316393 109 - 3.285 3.211 -0.247
ENSG00000167986 E058 1618.2920999 3.469011e-03 4.523900e-05 2.576399e-04 11 61316492 61316567 76 - 3.228 3.119 -0.361
ENSG00000167986 E059 2.3239640 7.692907e-02 6.778039e-01 7.824217e-01 11 61316568 61316569 2 - 0.401 0.493 0.476
ENSG00000167986 E060 6.6799645 4.179276e-03 7.743815e-01 8.545713e-01 11 61321255 61321594 340 - 0.850 0.823 -0.103
ENSG00000167986 E061 1751.4489299 2.710154e-03 5.322344e-09 6.910438e-08 11 61321595 61321697 103 - 3.285 3.143 -0.472
ENSG00000167986 E062 5.9404095 1.220082e-02 1.588040e-01 2.735443e-01 11 61321698 61322164 467 - 0.606 0.837 0.951
ENSG00000167986 E063 1101.7993235 1.211116e-03 8.717866e-13 2.162312e-11 11 61322296 61322316 21 - 3.077 2.945 -0.440
ENSG00000167986 E064 1815.8411859 9.449121e-04 7.207384e-23 6.310519e-21 11 61322317 61322412 96 - 3.311 3.154 -0.520
ENSG00000167986 E065 4.1306666 4.034821e-03 9.527063e-01 9.743748e-01 11 61322413 61322958 546 - 0.657 0.678 0.087
ENSG00000167986 E066 1553.7144833 1.663069e-03 2.237844e-12 5.187871e-11 11 61323011 61323094 84 - 3.232 3.092 -0.466
ENSG00000167986 E067 4.3050963 4.188558e-03 6.109639e-01 7.301988e-01 11 61323095 61323660 566 - 0.606 0.697 0.389
ENSG00000167986 E068 0.2214452 4.012699e-02 1.000000e+00   11 61323661 61323757 97 - 0.000 0.083 10.278
ENSG00000167986 E069 0.1482932 4.124390e-02 1.000000e+00   11 61323758 61323978 221 - 0.000 0.082 10.270
ENSG00000167986 E070 2119.9068998 1.472255e-03 4.875429e-13 1.257502e-11 11 61323979 61324137 159 - 3.362 3.229 -0.441
ENSG00000167986 E071 3.7621627 4.310507e-03 1.341461e-01 2.399189e-01 11 61324138 61324237 100 - 0.783 0.570 -0.896
ENSG00000167986 E072 0.9620705 1.304734e-02 5.899557e-03 1.834504e-02 11 61324238 61324387 150 - 0.548 0.083 -3.595
ENSG00000167986 E073 1492.2860768 2.346910e-03 3.049477e-06 2.277818e-05 11 61325611 61325708 98 - 3.190 3.085 -0.349
ENSG00000167986 E074 3.9000332 3.355521e-02 4.965609e-01 6.331924e-01 11 61325709 61326229 521 - 0.703 0.598 -0.450
ENSG00000167986 E075 1471.0642170 3.001944e-03 4.007745e-07 3.612921e-06 11 61326779 61326884 106 - 3.201 3.071 -0.431
ENSG00000167986 E076 705.0483141 8.305747e-03 7.249530e-05 3.921982e-04 11 61326885 61326893 9 - 2.909 2.739 -0.564
ENSG00000167986 E077 4.0223032 2.358203e-02 3.244874e-01 4.678536e-01 11 61326894 61326924 31 - 0.745 0.597 -0.627
ENSG00000167986 E078 0.0000000       11 61327511 61327551 41 -      
ENSG00000167986 E079 0.2934659 2.892615e-02 5.037864e-01   11 61328746 61328862 117 - 0.178 0.082 -1.276
ENSG00000167986 E080 1.9958694 6.747314e-02 4.460096e-01 5.875637e-01 11 61329362 61329362 1 - 0.548 0.422 -0.624
ENSG00000167986 E081 1314.1912670 4.990460e-03 2.448855e-06 1.868860e-05 11 61329363 61329473 111 - 3.168 3.015 -0.510
ENSG00000167986 E082 1228.2741272 4.400372e-03 2.228498e-05 1.366640e-04 11 61329474 61329584 111 - 3.122 2.993 -0.429
ENSG00000167986 E083 1339.6553696 5.513277e-03 1.678611e-06 1.327632e-05 11 61329958 61330074 117 - 3.184 3.019 -0.546
ENSG00000167986 E084 5.3046053 3.197552e-03 1.511627e-01 2.632566e-01 11 61330075 61330183 109 - 0.880 0.697 -0.727
ENSG00000167986 E085 0.1515154 4.243087e-02 1.933257e-01   11 61330184 61330209 26 - 0.178 0.000 -13.096
ENSG00000167986 E086 1634.0850650 6.548830e-03 1.438337e-08 1.721452e-07 11 61331543 61331691 149 - 3.302 3.089 -0.709
ENSG00000167986 E087 13.8976619 1.348860e-03 1.973551e-10 3.309287e-09 11 61331692 61332633 942 - 1.452 0.898 -1.984
ENSG00000167986 E088 1.3682533 1.018295e-01 3.433190e-01 4.873485e-01 11 61332634 61332737 104 - 0.481 0.307 -0.981
ENSG00000167986 E089 4.6686824 5.091234e-03 3.564626e-01 5.008326e-01 11 61332738 61332907 170 - 0.783 0.659 -0.506
ENSG00000167986 E090 1192.9749388 9.484398e-03 2.820757e-07 2.625049e-06 11 61332908 61333008 101 - 3.178 2.945 -0.778
ENSG00000167986 E091 733.9157582 7.553276e-03 2.561627e-06 1.947480e-05 11 61333009 61333144 136 - 2.943 2.748 -0.650
ENSG00000167986 E092 4.7730832 6.027854e-02 1.812033e-01 3.027358e-01 11 61333145 61333224 80 - 0.850 0.643 -0.839
ENSG00000167986 E093 1.5091451 9.619295e-03 7.595494e-01 8.438908e-01 11 61333526 61333603 78 - 0.401 0.353 -0.274
ENSG00000167986 E094 2.8700987 6.742185e-03 1.149893e-01 2.128192e-01 11 61333604 61333807 204 - 0.703 0.460 -1.103
ENSG00000167986 E095 0.5117019 2.187666e-02 3.424479e-01 4.864467e-01 11 61335311 61335435 125 - 0.000 0.211 11.858
ENSG00000167986 E096 0.0000000       11 61335436 61335668 233 -      
ENSG00000167986 E097 0.1472490 4.256273e-02 1.935054e-01   11 61342368 61342596 229 - 0.178 0.000 -13.095