ENSG00000166444

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000526241 ENSG00000166444 HEK293_OSMI2_2hA HEK293_TMG_2hB DENND2B protein_coding protein_coding 9.39434 14.99012 6.334424 1.718331 0.3097869 -1.241413 0.08003416 0.1200127 0.3609746 0.12001272 0.36097461 1.5126676 0.01012083 0.0069000 0.06086667 0.05396667 0.9408951488 0.0004075538 FALSE FALSE
ENST00000526757 ENSG00000166444 HEK293_OSMI2_2hA HEK293_TMG_2hB DENND2B protein_coding protein_coding 9.39434 14.99012 6.334424 1.718331 0.3097869 -1.241413 1.48375559 3.5574925 0.3144743 0.19506017 0.31447435 -3.4587341 0.14502500 0.2455333 0.04530000 -0.20023333 0.0930214275 0.0004075538 FALSE TRUE
ENST00000528452 ENSG00000166444 HEK293_OSMI2_2hA HEK293_TMG_2hB DENND2B protein_coding processed_transcript 9.39434 14.99012 6.334424 1.718331 0.3097869 -1.241413 1.26282696 3.6331697 0.5692060 0.78809751 0.08166691 -2.6530457 0.11992500 0.2384333 0.08906667 -0.14936667 0.0004075538 0.0004075538   FALSE
ENST00000532162 ENSG00000166444 HEK293_OSMI2_2hA HEK293_TMG_2hB DENND2B protein_coding retained_intron 9.39434 14.99012 6.334424 1.718331 0.3097869 -1.241413 1.63369147 2.4267779 0.6175741 0.36715748 0.11956015 -1.9571171 0.15956667 0.1667000 0.09883333 -0.06786667 0.3446143198 0.0004075538 FALSE TRUE
ENST00000534127 ENSG00000166444 HEK293_OSMI2_2hA HEK293_TMG_2hB DENND2B protein_coding protein_coding 9.39434 14.99012 6.334424 1.718331 0.3097869 -1.241413 1.48584207 1.6722649 1.1640423 0.24916465 0.08984958 -0.5189205 0.16492917 0.1106000 0.18556667 0.07496667 0.0451535517 0.0004075538 FALSE TRUE
MSTRG.5124.2 ENSG00000166444 HEK293_OSMI2_2hA HEK293_TMG_2hB DENND2B protein_coding   9.39434 14.99012 6.334424 1.718331 0.3097869 -1.241413 0.90503660 0.7757093 1.0446905 0.09005339 0.27542803 0.4247521 0.10422083 0.0538000 0.16810000 0.11430000 0.0529476270 0.0004075538 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000166444 E001 0.0000000       11 8693082 8693350 269 -      
ENSG00000166444 E002 0.0000000       11 8693351 8693351 1 -      
ENSG00000166444 E003 0.1817044 0.0391810258 1.0000000000   11 8693352 8693352 1 - 0.000 0.086 9.310
ENSG00000166444 E004 76.1504631 0.0101199817 0.0023656499 0.008354746 11 8693353 8693747 395 - 1.675 1.889 0.722
ENSG00000166444 E005 50.2110955 0.0297118485 0.2944365583 0.435537219 11 8693748 8693872 125 - 1.576 1.693 0.398
ENSG00000166444 E006 21.1212611 0.0269059862 0.3010136349 0.442787273 11 8693873 8693888 16 - 1.203 1.334 0.460
ENSG00000166444 E007 19.5902589 0.0406267075 0.3976537074 0.541401325 11 8693889 8693898 10 - 1.176 1.303 0.448
ENSG00000166444 E008 55.5452630 0.0200962591 0.1085632047 0.203419910 11 8693899 8694061 163 - 1.587 1.740 0.519
ENSG00000166444 E009 35.0983299 0.0006508972 0.0385979040 0.088447613 11 8694062 8694095 34 - 1.392 1.536 0.497
ENSG00000166444 E010 35.1699592 0.0006028799 0.0084425928 0.024891432 11 8694096 8694130 35 - 1.365 1.550 0.634
ENSG00000166444 E011 0.1817044 0.0391810258 1.0000000000   11 8694547 8694655 109 - 0.000 0.086 12.207
ENSG00000166444 E012 55.8394451 0.0004452678 0.0262533925 0.064459447 11 8695463 8695549 87 - 1.608 1.732 0.419
ENSG00000166444 E013 0.8878717 0.0152777015 0.6755138507 0.780777229 11 8695550 8695995 446 - 0.293 0.220 -0.550
ENSG00000166444 E014 39.1067170 0.0005557160 0.1866753350 0.309562877 11 8696427 8696435 9 - 1.483 1.571 0.299
ENSG00000166444 E015 45.1269874 0.0005264908 0.0585419698 0.124132302 11 8696436 8696464 29 - 1.523 1.639 0.397
ENSG00000166444 E016 73.8116245 0.0003735041 0.2080322548 0.336123579 11 8696465 8696666 202 - 1.777 1.839 0.209
ENSG00000166444 E017 40.9906927 0.0005759457 0.7571203994 0.842055598 11 8697525 8697575 51 - 1.582 1.568 -0.046
ENSG00000166444 E018 41.4446182 0.0005790835 0.4321317273 0.574583338 11 8697576 8697636 61 - 1.541 1.593 0.177
ENSG00000166444 E019 0.1817044 0.0391810258 1.0000000000   11 8697637 8697773 137 - 0.000 0.086 12.207
ENSG00000166444 E020 0.0000000       11 8697924 8697964 41 -      
ENSG00000166444 E021 34.6859272 0.0015915888 0.7073697566 0.805313981 11 8698933 8698974 42 - 1.483 1.513 0.102
ENSG00000166444 E022 0.6224193 0.0181509303 0.4347510195 0.577061219 11 8698975 8699020 46 - 0.293 0.158 -1.138
ENSG00000166444 E023 53.5311452 0.0005421485 0.8863519880 0.931316265 11 8699213 8699390 178 - 1.684 1.681 -0.009
ENSG00000166444 E024 2.8971672 0.0344741465 0.2098491816 0.338376344 11 8699857 8699965 109 - 0.686 0.475 -0.956
ENSG00000166444 E025 1.6522545 0.0081680223 0.5531152418 0.682320611 11 8699966 8700012 47 - 0.467 0.365 -0.552
ENSG00000166444 E026 0.6611159 0.0222150054 0.0750994840 0.151693447 11 8702570 8702571 2 - 0.389 0.086 -2.719
ENSG00000166444 E027 36.0875746 0.0006497296 0.6706742881 0.777058222 11 8702572 8702673 102 - 1.490 1.522 0.109
ENSG00000166444 E028 27.2022142 0.0108846846 0.1414233914 0.249974251 11 8702674 8702720 47 - 1.297 1.434 0.475
ENSG00000166444 E029 1.1415822 0.0132144832 0.4263384900 0.569181398 11 8702721 8702817 97 - 0.171 0.322 1.188
ENSG00000166444 E030 1.9960558 0.0086793871 0.7866949976 0.863387039 11 8702818 8703398 581 - 0.389 0.441 0.280
ENSG00000166444 E031 0.8135738 0.0730165216 0.6119504154 0.730985897 11 8703399 8703611 213 - 0.171 0.272 0.853
ENSG00000166444 E032 19.3262165 0.0043334745 0.5543379620 0.683326158 11 8707085 8707102 18 - 1.216 1.274 0.204
ENSG00000166444 E033 30.8299420 0.0089187983 0.8141049851 0.882210174 11 8707103 8707205 103 - 1.440 1.465 0.087
ENSG00000166444 E034 18.3696935 0.0148699839 0.1337029273 0.239301815 11 8707206 8707225 20 - 1.116 1.283 0.591
ENSG00000166444 E035 0.2966881 0.0290785164 0.0597677654   11 8707226 8707266 41 - 0.293 0.000 -15.722
ENSG00000166444 E036 26.1038084 0.0041553179 0.3495813442 0.493790165 11 8707777 8707854 78 - 1.328 1.408 0.277
ENSG00000166444 E037 0.4482035 0.0256306806 0.0162672107 0.043314981 11 8707911 8708081 171 - 0.389 0.000 -16.278
ENSG00000166444 E038 24.6826788 0.0013534896 0.4802449536 0.618551041 11 8710845 8710910 66 - 1.318 1.377 0.206
ENSG00000166444 E039 14.7260420 0.0181600885 0.6108438612 0.730107922 11 8710911 8710914 4 - 1.100 1.166 0.238
ENSG00000166444 E040 0.5901394 0.2367160378 0.9215316125 0.954466128 11 8710915 8710957 43 - 0.171 0.162 -0.093
ENSG00000166444 E041 14.8107350 0.0062756838 0.6669726371 0.774330131 11 8711122 8711125 4 - 1.116 1.165 0.174
ENSG00000166444 E042 31.1384861 0.0006493712 0.1087766113 0.203733133 11 8711126 8711231 106 - 1.365 1.483 0.406
ENSG00000166444 E043 0.0000000       11 8711904 8711967 64 -      
ENSG00000166444 E044 0.0000000       11 8711968 8712036 69 -      
ENSG00000166444 E045 22.3947896 0.0009068628 0.4113014098 0.554886299 11 8712551 8712599 49 - 1.264 1.335 0.248
ENSG00000166444 E046 33.2946850 0.0006109607 0.7816424705 0.859713933 11 8712600 8712735 136 - 1.490 1.477 -0.046
ENSG00000166444 E047 20.7067747 0.0010361685 0.7210639809 0.815552472 11 8713998 8714042 45 - 1.264 1.298 0.119
ENSG00000166444 E048 33.0292296 0.0026835473 0.8466229464 0.904676587 11 8714610 8714706 97 - 1.462 1.481 0.064
ENSG00000166444 E049 0.4031496 0.0244268878 0.5155074790 0.650174061 11 8715463 8715602 140 - 0.000 0.158 13.200
ENSG00000166444 E050 24.2657464 0.0182844685 0.7682852856 0.850295560 11 8715603 8715643 41 - 1.356 1.339 -0.060
ENSG00000166444 E051 22.0989363 0.0137962976 0.4772432299 0.615832281 11 8715644 8715672 29 - 1.347 1.289 -0.204
ENSG00000166444 E052 28.6026204 0.0078081242 0.5637142566 0.691147089 11 8715673 8715722 50 - 1.440 1.401 -0.136
ENSG00000166444 E053 25.7049168 0.0008140010 0.2654514307 0.403509705 11 8715723 8715741 19 - 1.425 1.348 -0.264
ENSG00000166444 E054 23.8280053 0.0009216404 0.8317137224 0.894542835 11 8715742 8715754 13 - 1.347 1.335 -0.041
ENSG00000166444 E055 23.0008812 0.0008829945 0.4525461868 0.593385456 11 8715755 8715780 26 - 1.366 1.313 -0.184
ENSG00000166444 E056 20.3403985 0.0030269666 0.9684769022 0.984297613 11 8715781 8715798 18 - 1.276 1.284 0.028
ENSG00000166444 E057 21.4056247 0.0236554220 0.4467689530 0.588240872 11 8715799 8715818 20 - 1.357 1.283 -0.259
ENSG00000166444 E058 0.1472490 0.0425493320 0.2196790265   11 8715819 8715830 12 - 0.171 0.000 -14.704
ENSG00000166444 E059 27.7307121 0.0008752828 0.5275426010 0.660588512 11 8717741 8717793 53 - 1.440 1.400 -0.137
ENSG00000166444 E060 24.1387752 0.0008180442 0.7277450891 0.820346800 11 8717794 8717831 38 - 1.365 1.344 -0.075
ENSG00000166444 E061 24.6194450 0.0008378074 0.5569797631 0.685507709 11 8717832 8717878 47 - 1.383 1.344 -0.136
ENSG00000166444 E062 17.4870000 0.0010372718 0.2941880729 0.435292010 11 8717879 8717881 3 - 1.275 1.190 -0.302
ENSG00000166444 E063 18.9983363 0.0010286948 0.1500169149 0.261694225 11 8717882 8717892 11 - 1.328 1.214 -0.399
ENSG00000166444 E064 0.3299976 0.0277731678 0.5178137859   11 8717893 8718060 168 - 0.000 0.158 13.187
ENSG00000166444 E065 0.2214452 0.0377069250 1.0000000000   11 8718359 8718427 69 - 0.000 0.086 12.213
ENSG00000166444 E066 0.2214452 0.0377069250 1.0000000000   11 8718428 8719143 716 - 0.000 0.086 12.213
ENSG00000166444 E067 35.1583383 0.0005741107 0.0238776700 0.059553028 11 8726073 8726209 137 - 1.598 1.464 -0.458
ENSG00000166444 E068 0.0000000       11 8726210 8726319 110 -      
ENSG00000166444 E069 16.3556395 0.0013439860 0.0216751615 0.055000661 11 8729950 8730010 61 - 1.318 1.124 -0.687
ENSG00000166444 E070 28.4754053 0.0007719190 0.0190146860 0.049365847 11 8730011 8730304 294 - 1.523 1.369 -0.530
ENSG00000166444 E071 23.7956736 0.0038509982 0.0319162438 0.075694947 11 8730305 8730620 316 - 1.455 1.294 -0.559
ENSG00000166444 E072 17.8215903 0.0103890443 0.5831003093 0.707298611 11 8730621 8730807 187 - 1.253 1.205 -0.168
ENSG00000166444 E073 6.8244823 0.0123332173 0.4818879832 0.620086485 11 8730808 8730827 20 - 0.766 0.868 0.402
ENSG00000166444 E074 5.2798246 0.0137752356 0.9021451040 0.941656016 11 8730828 8730830 3 - 0.728 0.750 0.090
ENSG00000166444 E075 7.0845119 0.0049264378 0.9275470819 0.958422485 11 8730831 8730841 11 - 0.862 0.854 -0.029
ENSG00000166444 E076 8.5238264 0.0029390674 0.9502188890 0.972844493 11 8730842 8730856 15 - 0.916 0.928 0.045
ENSG00000166444 E077 8.1540880 0.0025901266 0.8976440972 0.938659380 11 8730857 8730863 7 - 0.916 0.905 -0.043
ENSG00000166444 E078 7.9681172 0.0065876656 0.8256774847 0.890249180 11 8730864 8730870 7 - 0.916 0.893 -0.087
ENSG00000166444 E079 7.3382369 0.0023755742 0.8304188028 0.893602098 11 8730871 8730874 4 - 0.890 0.867 -0.086
ENSG00000166444 E080 9.7968793 0.0018099802 0.5178284429 0.652163518 11 8730875 8730916 42 - 1.027 0.960 -0.249
ENSG00000166444 E081 6.4390266 0.0026973360 0.5993755245 0.720782388 11 8730917 8730921 5 - 0.862 0.797 -0.251
ENSG00000166444 E082 9.2391200 0.0031575922 0.3589385592 0.503283083 11 8730922 8730954 33 - 1.027 0.928 -0.370
ENSG00000166444 E083 8.7972632 0.0020159907 0.0619524543 0.129905550 11 8730955 8730980 26 - 1.083 0.880 -0.753
ENSG00000166444 E084 8.8242430 0.0191250425 0.2384646567 0.372363310 11 8730981 8731004 24 - 1.047 0.905 -0.528
ENSG00000166444 E085 8.7575198 0.0019815607 0.4028165461 0.546614429 11 8731005 8731039 35 - 1.007 0.916 -0.340
ENSG00000166444 E086 8.5877332 0.0024142676 0.0585666599 0.124172147 11 8731040 8731067 28 - 1.065 0.854 -0.787
ENSG00000166444 E087 10.4000069 0.0337554311 0.3062729786 0.448431907 11 8731068 8731117 50 - 1.083 0.959 -0.458
ENSG00000166444 E088 8.6370219 0.0641801840 0.6125966512 0.731495288 11 8731118 8731122 5 - 0.965 0.907 -0.216
ENSG00000166444 E089 10.1817552 0.0502170058 0.5974071594 0.719167617 11 8731123 8731129 7 - 1.028 0.973 -0.203
ENSG00000166444 E090 10.4815638 0.0464428539 0.5554494434 0.684313339 11 8731130 8731132 3 - 1.047 0.982 -0.240
ENSG00000166444 E091 13.7999955 0.0286574680 0.0462007151 0.102404171 11 8731133 8731169 37 - 1.264 1.036 -0.818
ENSG00000166444 E092 11.6840376 0.0303370383 0.0408461508 0.092607388 11 8731170 8731199 30 - 1.217 0.964 -0.913
ENSG00000166444 E093 8.5722334 0.0022631865 0.0116009787 0.032585150 11 8731200 8731209 10 - 1.116 0.840 -1.026
ENSG00000166444 E094 24.7796320 0.0021520097 0.0798434637 0.159322779 11 8750621 8750725 105 - 1.440 1.313 -0.439
ENSG00000166444 E095 0.1472490 0.0425493320 0.2196790265   11 8757046 8757152 107 - 0.171 0.000 -14.704
ENSG00000166444 E096 0.1482932 0.0415153796 1.0000000000   11 8766637 8766712 76 - 0.000 0.086 12.197
ENSG00000166444 E097 0.0000000       11 8771674 8771919 246 -      
ENSG00000166444 E098 0.0000000       11 8774122 8774301 180 -      
ENSG00000166444 E099 0.1451727 0.0424701376 0.2198654429   11 8776192 8776679 488 - 0.171 0.000 -14.704
ENSG00000166444 E100 0.0000000       11 8794687 8794842 156 -      
ENSG00000166444 E101 0.0000000       11 8807826 8810516 2691 -      
ENSG00000166444 E102 0.0000000       11 8810517 8810612 96 -      
ENSG00000166444 E103 0.1817044 0.0391810258 1.0000000000   11 8810613 8811246 634 - 0.000 0.086 12.207
ENSG00000166444 E104 16.6024407 0.0011307442 0.0513776383 0.111601668 11 8811247 8811282 36 - 1.308 1.145 -0.576
ENSG00000166444 E105 17.0682098 0.0043783604 0.0128379309 0.035535826 11 8811283 8811331 49 - 1.347 1.132 -0.759
ENSG00000166444 E106 7.0021797 0.0210782382 0.0004650129 0.002026158 11 8811332 8811335 4 - 1.132 0.676 -1.744
ENSG00000166444 E107 0.0000000       11 8811336 8811341 6 -      
ENSG00000166444 E108 0.0000000       11 8811417 8811580 164 -      
ENSG00000166444 E109 13.3257836 0.0013556978 0.0060501246 0.018742792 11 8830701 8830874 174 - 0.862 1.171 1.140
ENSG00000166444 E110 15.5265033 0.0012363618 0.6433612808 0.755942422 11 8831556 8831688 133 - 1.190 1.152 -0.136
ENSG00000166444 E111 0.0000000       11 8831794 8831939 146 -      
ENSG00000166444 E112 0.0000000       11 8832562 8832587 26 -      
ENSG00000166444 E113 0.0000000       11 8835604 8835623 20 -      
ENSG00000166444 E114 0.0000000       11 8835624 8835711 88 -      
ENSG00000166444 E115 8.6628890 0.0020681296 0.0245429797 0.060938321 11 8839310 8839350 41 - 1.100 0.854 -0.914
ENSG00000166444 E116 0.0000000       11 8857343 8857436 94 -      
ENSG00000166444 E117 1.6230821 0.0879983462 0.6074452279 0.727420662 11 8870835 8870953 119 - 0.293 0.406 0.683
ENSG00000166444 E118 14.2580260 0.0012915915 0.0134659324 0.037002212 11 8870954 8871088 135 - 1.275 1.054 -0.791
ENSG00000166444 E119 2.3918185 0.0284731143 0.9804859619 0.991767529 11 8871089 8871333 245 - 0.467 0.476 0.046
ENSG00000166444 E120 3.7755016 0.0296905804 0.1312261171 0.235858386 11 8871334 8871418 85 - 0.800 0.561 -1.008
ENSG00000166444 E121 0.1515154 0.0423669983 0.2197938858   11 8881010 8881109 100 - 0.171 0.000 -14.705
ENSG00000166444 E122 0.0000000       11 8895534 8895581 48 -      
ENSG00000166444 E123 0.4439371 0.0215572120 0.0160153813 0.042770069 11 8909747 8909911 165 - 0.389 0.000 -16.301
ENSG00000166444 E124 0.5085815 0.2180264432 0.9195783088 0.953202002 11 8910821 8910951 131 - 0.171 0.159 -0.128