ENSG00000166377

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000307671 ENSG00000166377 HEK293_OSMI2_2hA HEK293_TMG_2hB ATP9B protein_coding protein_coding 5.420027 3.934443 7.231351 0.2815922 0.1369994 0.8764374 2.1272196 1.4124564 2.99509455 0.17388184 0.12841772 1.0790260 0.3894708 0.36923333 0.413866667 0.044633333 0.7882525 0.0197461 FALSE TRUE
ENST00000426216 ENSG00000166377 HEK293_OSMI2_2hA HEK293_TMG_2hB ATP9B protein_coding protein_coding 5.420027 3.934443 7.231351 0.2815922 0.1369994 0.8764374 0.4174584 0.2751678 0.47493070 0.04034319 0.09645842 0.7659676 0.0798125 0.07033333 0.065766667 -0.004566667 0.9284890 0.0197461 FALSE TRUE
ENST00000586722 ENSG00000166377 HEK293_OSMI2_2hA HEK293_TMG_2hB ATP9B protein_coding protein_coding 5.420027 3.934443 7.231351 0.2815922 0.1369994 0.8764374 1.6734553 0.7055483 2.78486556 0.15379476 0.07162131 1.9656579 0.2939667 0.18356667 0.385033333 0.201466667 0.0197461 0.0197461 FALSE FALSE
ENST00000590477 ENSG00000166377 HEK293_OSMI2_2hA HEK293_TMG_2hB ATP9B protein_coding nonsense_mediated_decay 5.420027 3.934443 7.231351 0.2815922 0.1369994 0.8764374 0.3093699 0.8397883 0.01995812 0.41989973 0.01995812 -4.8260846 0.0702750 0.19956667 0.002866667 -0.196700000 0.1522865 0.0197461 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000166377 E001 0.0000000       18 79069285 79069391 107 +      
ENSG00000166377 E002 0.1472490 0.0430352038 7.173041e-01   18 79069392 79069393 2 + 0.101 0.000 -11.287
ENSG00000166377 E003 0.1472490 0.0430352038 7.173041e-01   18 79069394 79069396 3 + 0.101 0.000 -11.284
ENSG00000166377 E004 0.1472490 0.0430352038 7.173041e-01   18 79069397 79069397 1 + 0.101 0.000 -11.284
ENSG00000166377 E005 2.3688947 0.1450058436 2.461468e-01 3.814241e-01 18 79069398 79069405 8 + 0.618 0.347 -1.362
ENSG00000166377 E006 2.6676592 0.1569545537 1.768399e-01 2.971386e-01 18 79069406 79069407 2 + 0.670 0.348 -1.584
ENSG00000166377 E007 9.5512914 0.0019205451 6.933601e-05 3.768072e-04 18 79069408 79069481 74 + 1.165 0.702 -1.756
ENSG00000166377 E008 11.4282425 0.0015067734 1.077494e-04 5.577573e-04 18 79069482 79069529 48 + 1.230 0.823 -1.501
ENSG00000166377 E009 1.3275450 0.0101034375 5.209301e-03 1.650091e-02 18 79077982 79078157 176 + 0.526 0.000 -14.453
ENSG00000166377 E010 0.0000000       18 79087307 79087314 8 +      
ENSG00000166377 E011 0.0000000       18 79087315 79087678 364 +      
ENSG00000166377 E012 0.0000000       18 79095633 79095762 130 +      
ENSG00000166377 E013 25.4012030 0.0007428299 1.233242e-06 1.004445e-05 18 79096476 79096649 174 + 1.542 1.191 -1.219
ENSG00000166377 E014 23.2147155 0.0009911912 2.172227e-05 1.335330e-04 18 79110355 79110505 151 + 1.497 1.180 -1.107
ENSG00000166377 E015 15.9258057 0.0011597751 3.658833e-03 1.217962e-02 18 79113241 79113309 69 + 1.315 1.061 -0.905
ENSG00000166377 E016 21.8409372 0.0009253666 2.962052e-05 1.765128e-04 18 79113310 79113354 45 + 1.467 1.144 -1.132
ENSG00000166377 E017 7.5231062 0.0070159923 9.195590e-06 6.164462e-05 18 79114994 79116082 1089 + 1.098 0.480 -2.514
ENSG00000166377 E018 24.0233646 0.0009028119 2.308068e-02 5.791555e-02 18 79126267 79126375 109 + 1.459 1.301 -0.551
ENSG00000166377 E019 18.8777136 0.0025589565 5.148131e-01 6.495361e-01 18 79143802 79143860 59 + 1.321 1.273 -0.167
ENSG00000166377 E020 0.0000000       18 79143861 79144286 426 +      
ENSG00000166377 E021 0.0000000       18 79154502 79154503 2 +      
ENSG00000166377 E022 17.4397172 0.0010610133 3.713280e-01 5.157667e-01 18 79154504 79154555 52 + 1.293 1.224 -0.242
ENSG00000166377 E023 0.1472490 0.0430352038 7.173041e-01   18 79173702 79173733 32 + 0.101 0.000 -11.284
ENSG00000166377 E024 19.4119148 0.0009630286 4.653374e-01 6.050606e-01 18 79176813 79176907 95 + 1.326 1.274 -0.184
ENSG00000166377 E025 20.4600874 0.0009258400 3.573477e-01 5.017525e-01 18 79193183 79193263 81 + 1.357 1.292 -0.229
ENSG00000166377 E026 0.3299976 0.0274424043 1.093856e-01   18 79194386 79194492 107 + 0.000 0.257 13.252
ENSG00000166377 E027 0.1451727 0.0435185009 7.170550e-01   18 79194493 79194608 116 + 0.101 0.000 -11.283
ENSG00000166377 E028 0.0000000       18 79206936 79206936 1 +      
ENSG00000166377 E029 17.6567834 0.0011744525 2.471651e-01 3.825890e-01 18 79206937 79206976 40 + 1.304 1.213 -0.319
ENSG00000166377 E030 17.4667497 0.0055499636 5.370183e-02 1.157293e-01 18 79206977 79207012 36 + 1.326 1.157 -0.597
ENSG00000166377 E031 0.0000000       18 79209548 79209722 175 +      
ENSG00000166377 E032 22.8277744 0.0442949766 2.251235e-01 3.565789e-01 18 79213962 79214038 77 + 1.426 1.289 -0.475
ENSG00000166377 E033 28.7657373 0.0198443184 4.598376e-01 5.999109e-01 18 79253381 79253541 161 + 1.493 1.433 -0.209
ENSG00000166377 E034 0.5901394 0.3499975823 4.380555e-01 5.799282e-01 18 79253542 79255271 1730 + 0.101 0.265 1.685
ENSG00000166377 E035 26.6668424 0.0026209787 3.522172e-01 4.964917e-01 18 79277054 79277196 143 + 1.463 1.402 -0.211
ENSG00000166377 E036 0.0000000       18 79277197 79277268 72 +      
ENSG00000166377 E037 0.0000000       18 79299899 79299991 93 +      
ENSG00000166377 E038 24.4756986 0.0008002782 5.947202e-01 7.169179e-01 18 79303604 79303716 113 + 1.414 1.381 -0.114
ENSG00000166377 E039 25.2794636 0.0044025102 1.126087e-01 2.093590e-01 18 79306986 79307111 126 + 1.460 1.343 -0.403
ENSG00000166377 E040 20.2392949 0.0009485688 3.712419e-01 5.156710e-01 18 79307112 79307189 78 + 1.347 1.283 -0.225
ENSG00000166377 E041 17.4671394 0.0010274169 1.981534e-01 3.238951e-01 18 79307190 79307234 45 + 1.304 1.203 -0.358
ENSG00000166377 E042 0.2214452 0.0403538924 3.242393e-01   18 79307235 79307440 206 + 0.000 0.148 12.258
ENSG00000166377 E043 27.4262029 0.0007025818 2.019768e-01 3.286796e-01 18 79329141 79329302 162 + 1.482 1.402 -0.278
ENSG00000166377 E044 21.6763619 0.0121774131 1.883035e-01 3.116000e-01 18 79330012 79330104 93 + 1.298 1.420 0.424
ENSG00000166377 E045 0.2998086 0.0292499610 7.607994e-01   18 79332828 79332853 26 + 0.101 0.147 0.620
ENSG00000166377 E046 0.4470576 0.0214273810 8.340394e-01 8.960674e-01 18 79332854 79333000 147 + 0.183 0.147 -0.379
ENSG00000166377 E047 0.0000000       18 79336626 79336627 2 +      
ENSG00000166377 E048 19.5465823 0.0236142579 3.943815e-01 5.382265e-01 18 79336628 79336711 84 + 1.268 1.358 0.314
ENSG00000166377 E049 14.6438285 0.0055783808 1.174248e-01 2.162745e-01 18 79337279 79337316 38 + 1.125 1.273 0.526
ENSG00000166377 E050 22.0406652 0.0081702602 3.814532e-02 8.763345e-02 18 79337317 79337449 133 + 1.281 1.458 0.614
ENSG00000166377 E051 20.4360209 0.0009839177 5.616811e-01 6.894351e-01 18 79342268 79342366 99 + 1.310 1.358 0.168
ENSG00000166377 E052 0.1472490 0.0430352038 7.173041e-01   18 79344139 79344264 126 + 0.101 0.000 -11.284
ENSG00000166377 E053 17.9374544 0.0010838653 2.182880e-01 3.483439e-01 18 79344265 79344327 63 + 1.224 1.326 0.360
ENSG00000166377 E054 12.3985109 0.0016314141 5.609381e-02 1.198683e-01 18 79344328 79344354 27 + 1.029 1.214 0.662
ENSG00000166377 E055 23.5416168 0.0008014399 5.391358e-01 6.704190e-01 18 79345428 79345572 145 + 1.405 1.366 -0.135
ENSG00000166377 E056 20.5461262 0.0009379261 3.573072e-01 5.017067e-01 18 79345775 79345839 65 + 1.357 1.292 -0.229
ENSG00000166377 E057 0.1472490 0.0430352038 7.173041e-01   18 79345840 79345840 1 + 0.101 0.000 -11.284
ENSG00000166377 E058 15.6599662 0.0011718270 6.613424e-01 7.698033e-01 18 79347770 79347807 38 + 1.203 1.244 0.147
ENSG00000166377 E059 24.6582477 0.0007748443 6.897800e-01 7.915966e-01 18 79347808 79347906 99 + 1.418 1.395 -0.080
ENSG00000166377 E060 15.4446129 0.0013507529 9.270767e-01 9.581117e-01 18 79347907 79347925 19 + 1.217 1.213 -0.012
ENSG00000166377 E061 19.0902622 0.0009772206 3.962279e-01 5.400145e-01 18 79348132 79348196 65 + 1.326 1.264 -0.218
ENSG00000166377 E062 17.6987126 0.0035500134 6.465200e-01 7.583980e-01 18 79359354 79359395 42 + 1.256 1.300 0.151
ENSG00000166377 E063 24.4838404 0.0008755685 7.523644e-01 8.385834e-01 18 79359396 79359462 67 + 1.396 1.422 0.091
ENSG00000166377 E064 3.4857530 0.0672698036 5.538766e-01 6.829441e-01 18 79359463 79361738 2276 + 0.694 0.583 -0.480
ENSG00000166377 E065 0.4762024 0.2201917232 8.838848e-01 9.297524e-01 18 79361739 79361992 254 + 0.183 0.148 -0.373
ENSG00000166377 E066 3.3008119 0.0448635708 9.441762e-01 9.690093e-01 18 79361993 79364284 2292 + 0.618 0.628 0.043
ENSG00000166377 E067 1.9520501 0.0082084533 1.994702e-01 3.255795e-01 18 79372390 79372558 169 + 0.364 0.583 1.107
ENSG00000166377 E068 2.3229198 0.0215656133 3.824510e-02 8.781155e-02 18 79372559 79372685 127 + 0.312 0.667 1.799
ENSG00000166377 E069 1.3705161 0.4743451178 2.736164e-01 4.126791e-01 18 79372686 79372824 139 + 0.184 0.504 2.056
ENSG00000166377 E070 21.7502960 0.0041244464 2.625995e-01 4.003788e-01 18 79372825 79372882 58 + 1.310 1.402 0.320
ENSG00000166377 E071 37.7042852 0.0012934652 7.994907e-03 2.376644e-02 18 79373898 79374101 204 + 1.508 1.665 0.535
ENSG00000166377 E072 0.0000000       18 79374102 79374275 174 +      
ENSG00000166377 E073 2.6195218 0.0057506240 4.078047e-01 5.514012e-01 18 79375394 79375426 33 + 0.491 0.626 0.623
ENSG00000166377 E074 53.0121104 0.0028016576 1.257231e-06 1.022270e-05 18 79377247 79377598 352 + 1.591 1.851 0.880
ENSG00000166377 E075 28.8070053 0.0110682890 5.623743e-04 2.393461e-03 18 79377599 79377710 112 + 1.326 1.610 0.978
ENSG00000166377 E076 16.6665853 0.0077290356 5.169024e-03 1.638730e-02 18 79377711 79377729 19 + 1.107 1.366 0.915
ENSG00000166377 E077 23.9734503 0.0013500398 1.448476e-07 1.426616e-06 18 79377730 79377841 112 + 1.188 1.567 1.317
ENSG00000166377 E078 30.2976819 0.0098344152 1.219269e-08 1.480306e-07 18 79377842 79378287 446 + 1.237 1.689 1.558