ENSG00000165699

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000298552 ENSG00000165699 HEK293_OSMI2_2hA HEK293_TMG_2hB TSC1 protein_coding protein_coding 11.2274 10.69079 11.61545 0.08292382 0.3405734 0.1195688 0.5513704 0.0000000 0.7954453 0.0000000 0.7954453 6.331715 0.04923333 0.00000000 0.07026667 0.07026667 0.8652346256 0.0001158272 FALSE TRUE
ENST00000440111 ENSG00000165699 HEK293_OSMI2_2hA HEK293_TMG_2hB TSC1 protein_coding protein_coding 11.2274 10.69079 11.61545 0.08292382 0.3405734 0.1195688 3.1355501 1.5604836 4.4130986 0.4673338 0.7978823 1.493849 0.27425000 0.14596667 0.37910000 0.23313333 0.0703146548 0.0001158272 FALSE TRUE
ENST00000642745 ENSG00000165699 HEK293_OSMI2_2hA HEK293_TMG_2hB TSC1 protein_coding protein_coding 11.2274 10.69079 11.61545 0.08292382 0.3405734 0.1195688 1.0903471 2.4488950 0.4269809 0.3705555 0.4269809 -2.492368 0.10161250 0.22963333 0.03803333 -0.19160000 0.0781364492 0.0001158272 FALSE TRUE
ENST00000643625 ENSG00000165699 HEK293_OSMI2_2hA HEK293_TMG_2hB TSC1 protein_coding nonsense_mediated_decay 11.2274 10.69079 11.61545 0.08292382 0.3405734 0.1195688 0.2366080 0.5906238 0.0000000 0.3990773 0.0000000 -5.908390 0.02096667 0.05530000 0.00000000 -0.05530000 0.1575478727 0.0001158272 FALSE TRUE
ENST00000644097 ENSG00000165699 HEK293_OSMI2_2hA HEK293_TMG_2hB TSC1 protein_coding protein_coding 11.2274 10.69079 11.61545 0.08292382 0.3405734 0.1195688 0.6006846 0.2660950 0.8530971 0.1694798 0.1728428 1.644358 0.05328333 0.02513333 0.07366667 0.04853333 0.3347781017 0.0001158272 FALSE TRUE
ENST00000644786 ENSG00000165699 HEK293_OSMI2_2hA HEK293_TMG_2hB TSC1 protein_coding processed_transcript 11.2274 10.69079 11.61545 0.08292382 0.3405734 0.1195688 1.8580114 2.7608447 0.9454730 0.4170797 0.1489569 -1.536039 0.17065833 0.25770000 0.08090000 -0.17680000 0.0001158272 0.0001158272 FALSE TRUE
ENST00000645150 ENSG00000165699 HEK293_OSMI2_2hA HEK293_TMG_2hB TSC1 protein_coding protein_coding 11.2274 10.69079 11.61545 0.08292382 0.3405734 0.1195688 1.1885954 1.5219407 0.7493875 0.4574243 0.4207420 -1.012452 0.10463333 0.14190000 0.06280000 -0.07910000 0.6127885689 0.0001158272 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000165699 E001 0.0000000       9 132891348 132891348 1 -      
ENSG00000165699 E002 0.5514428 0.0197653972 5.037490e-02 1.098327e-01 9 132891349 132891349 1 - 0.000 0.336 11.770
ENSG00000165699 E003 1.1404508 0.0110790140 1.399947e-01 2.480182e-01 9 132891350 132891352 3 - 0.189 0.469 1.835
ENSG00000165699 E004 2.2767476 0.0066471219 2.397071e-03 8.451537e-03 9 132891353 132891374 22 - 0.189 0.723 2.974
ENSG00000165699 E005 14.2009332 0.0234864700 9.989499e-07 8.287994e-06 9 132891375 132891389 15 - 0.790 1.408 2.250
ENSG00000165699 E006 14.2009332 0.0234864700 9.989499e-07 8.287994e-06 9 132891390 132891391 2 - 0.790 1.408 2.250
ENSG00000165699 E007 491.3925618 0.0093734033 1.633226e-06 1.294872e-05 9 132891392 132893352 1961 - 2.559 2.808 0.830
ENSG00000165699 E008 254.9287712 0.0002049961 1.941694e-01 3.189989e-01 9 132893353 132894777 1425 - 2.401 2.413 0.039
ENSG00000165699 E009 22.0552040 0.0155615076 2.055225e-03 7.396586e-03 9 132894778 132894848 71 - 1.459 1.200 -0.901
ENSG00000165699 E010 57.8839920 0.0048030922 6.014311e-03 1.864923e-02 9 132894849 132895077 229 - 1.816 1.700 -0.393
ENSG00000165699 E011 150.0289460 0.0002408589 2.142711e-07 2.042108e-06 9 132895078 132895911 834 - 2.224 2.112 -0.374
ENSG00000165699 E012 42.0638834 0.0006093330 2.338793e-02 5.855310e-02 9 132895912 132895977 66 - 1.665 1.579 -0.290
ENSG00000165699 E013 31.5843937 0.0006744803 1.484333e-01 2.595435e-01 9 132895978 132895998 21 - 1.531 1.480 -0.175
ENSG00000165699 E014 46.9815818 0.0004911571 2.242887e-01 3.555509e-01 9 132895999 132896087 89 - 1.687 1.664 -0.078
ENSG00000165699 E015 44.1234536 0.0005269341 7.008111e-02 1.435004e-01 9 132896088 132896166 79 - 1.675 1.618 -0.194
ENSG00000165699 E016 33.9074567 0.0072761342 3.058804e-01 4.480227e-01 9 132896167 132896197 31 - 1.558 1.522 -0.122
ENSG00000165699 E017 86.7519420 0.0067804171 4.035485e-01 5.473252e-01 9 132896198 132896540 343 - 1.946 1.940 -0.020
ENSG00000165699 E018 16.3212385 0.0505096420 6.015099e-01 7.226427e-01 9 132896541 132896541 1 - 1.261 1.207 -0.189
ENSG00000165699 E019 55.4406399 0.0040391018 7.450171e-01 8.331735e-01 9 132896542 132896754 213 - 1.742 1.764 0.073
ENSG00000165699 E020 52.6866888 0.0004358673 5.434733e-01 6.740967e-01 9 132897184 132897345 162 - 1.724 1.735 0.035
ENSG00000165699 E021 0.8878743 0.0131125821 1.789408e-02 4.691104e-02 9 132897346 132897422 77 - 0.421 0.000 -15.605
ENSG00000165699 E022 22.1970455 0.0008540786 3.609433e-01 5.053143e-01 9 132897423 132897427 5 - 1.378 1.350 -0.096
ENSG00000165699 E023 52.3061487 0.0004910456 1.136671e-02 3.204161e-02 9 132897428 132897610 183 - 1.763 1.678 -0.286
ENSG00000165699 E024 1.6961495 0.0396335854 9.181010e-01 9.522379e-01 9 132898980 132900714 1735 - 0.420 0.467 0.243
ENSG00000165699 E025 40.4050535 0.0017185266 1.149608e-01 2.127830e-01 9 132900715 132900837 123 - 1.633 1.580 -0.180
ENSG00000165699 E026 22.9988667 0.0010184866 7.440015e-02 1.505755e-01 9 132901589 132901630 42 - 1.411 1.319 -0.320
ENSG00000165699 E027 32.2215896 0.0006646519 6.244228e-03 1.925406e-02 9 132901631 132901699 69 - 1.571 1.439 -0.453
ENSG00000165699 E028 0.0000000       9 132901909 132901958 50 -      
ENSG00000165699 E029 40.6286259 0.0020171644 1.483097e-04 7.396822e-04 9 132902605 132902783 179 - 1.689 1.502 -0.638
ENSG00000165699 E030 14.0940680 0.0161266781 8.233812e-02 1.631989e-01 9 132902784 132902787 4 - 1.239 1.090 -0.530
ENSG00000165699 E031 36.0948033 0.0063129040 2.271357e-03 8.063673e-03 9 132903651 132903802 152 - 1.638 1.463 -0.597
ENSG00000165699 E032 17.7978605 0.0019292504 1.436977e-05 9.204766e-05 9 132903803 132903817 15 - 1.397 1.061 -1.190
ENSG00000165699 E033 21.8878333 0.0019484334 1.878759e-04 9.118338e-04 9 132904411 132904454 44 - 1.459 1.209 -0.873
ENSG00000165699 E034 90.3879982 0.0028750407 1.589448e-09 2.270518e-08 9 132905581 132906139 559 - 2.051 1.813 -0.800
ENSG00000165699 E035 1.0339894 0.0532429752 9.533995e-01 9.748628e-01 9 132906140 132906542 403 - 0.320 0.334 0.087
ENSG00000165699 E036 15.5740698 0.0100666638 1.071901e-01 2.013792e-01 9 132906731 132906743 13 - 1.272 1.152 -0.422
ENSG00000165699 E037 14.5213569 0.0058448766 9.649789e-02 1.851096e-01 9 132906744 132906750 7 - 1.246 1.128 -0.419
ENSG00000165699 E038 27.5479179 0.0022986434 1.416226e-04 7.105207e-04 9 132906751 132906835 85 - 1.548 1.318 -0.792
ENSG00000165699 E039 27.3908471 0.0007720873 2.133293e-09 2.972536e-08 9 132907301 132907370 70 - 1.592 1.209 -1.330
ENSG00000165699 E040 0.3666179 0.0258609761 8.453686e-01 9.038413e-01 9 132909752 132909806 55 - 0.105 0.143 0.518
ENSG00000165699 E041 49.2320106 0.0090987537 1.269440e-23 1.206076e-21 9 132909807 132910260 454 - 1.181 1.962 2.678
ENSG00000165699 E042 44.5463158 0.0101662093 1.175957e-17 5.715277e-16 9 132910261 132910570 310 - 1.211 1.901 2.368
ENSG00000165699 E043 55.6701871 0.0004410853 2.608734e-01 3.984591e-01 9 132910571 132910636 66 - 1.708 1.801 0.313
ENSG00000165699 E044 51.5912517 0.0014410428 6.713658e-01 7.776087e-01 9 132910637 132910689 53 - 1.713 1.731 0.061
ENSG00000165699 E045 26.5217421 0.0008196453 5.226912e-01 6.564505e-01 9 132910690 132910692 3 - 1.442 1.438 -0.013
ENSG00000165699 E046 5.4971910 0.0107144120 1.710710e-03 6.315553e-03 9 132910693 132910998 306 - 0.949 0.524 -1.754
ENSG00000165699 E047 1.2804147 0.0467716217 3.116559e-01 4.541225e-01 9 132910999 132911001 3 - 0.420 0.251 -1.063
ENSG00000165699 E048 68.7152323 0.0054643323 7.914114e-01 8.665853e-01 9 132911002 132911113 112 - 1.817 1.872 0.185
ENSG00000165699 E049 6.5258062 0.0071821227 5.659498e-02 1.207513e-01 9 132911114 132911290 177 - 0.962 0.753 -0.808
ENSG00000165699 E050 6.0509521 0.0034042312 3.088182e-03 1.052489e-02 9 132911291 132911409 119 - 0.975 0.614 -1.439
ENSG00000165699 E051 4.9812703 0.0032296845 2.098013e-01 3.383118e-01 9 132911410 132911452 43 - 0.827 0.689 -0.555
ENSG00000165699 E052 53.9904055 0.0040014121 5.648186e-01 6.920367e-01 9 132911453 132911507 55 - 1.706 1.778 0.243
ENSG00000165699 E053 53.2085279 0.0050078272 4.740090e-01 6.128744e-01 9 132911508 132911568 61 - 1.697 1.780 0.280
ENSG00000165699 E054 80.0526099 0.0009999527 3.783170e-01 5.225906e-01 9 132912282 132912457 176 - 1.872 1.949 0.257
ENSG00000165699 E055 0.1482932 0.0412179795 3.806309e-01   9 132912458 132912921 464 - 0.000 0.142 12.678
ENSG00000165699 E056 52.2252497 0.0008008386 1.142596e-01 2.117500e-01 9 132921363 132921425 63 - 1.670 1.787 0.398
ENSG00000165699 E057 36.7956227 0.0047025552 1.327457e-02 3.655803e-02 9 132921426 132921436 11 - 1.475 1.677 0.690
ENSG00000165699 E058 68.4920240 0.0098787733 9.823228e-01 9.929897e-01 9 132921819 132921940 122 - 1.822 1.863 0.136
ENSG00000165699 E059 42.7838804 0.0158544560 2.620221e-01 3.997464e-01 9 132921941 132921973 33 - 1.660 1.612 -0.163
ENSG00000165699 E060 60.7649136 0.0004224847 1.579896e-02 4.228390e-02 9 132923348 132923479 132 - 1.820 1.750 -0.237
ENSG00000165699 E061 30.7328860 0.0006518864 2.171594e-01 3.469667e-01 9 132923480 132923492 13 - 1.513 1.474 -0.133
ENSG00000165699 E062 1.6607768 0.0099620948 2.739855e-01 4.130846e-01 9 132923493 132923684 192 - 0.502 0.336 -0.902
ENSG00000165699 E063 0.8899506 0.0132527016 1.791695e-02 4.695672e-02 9 132924815 132924906 92 - 0.421 0.000 -15.603
ENSG00000165699 E064 0.6277178 0.0230178038 4.527221e-01 5.935485e-01 9 132924907 132924939 33 - 0.259 0.143 -1.070
ENSG00000165699 E065 0.3634088 0.3105747868 1.998501e-01   9 132924940 132925007 68 - 0.000 0.251 12.819
ENSG00000165699 E066 60.8008390 0.0178164199 9.940073e-01 1.000000e+00 9 132925587 132925734 148 - 1.764 1.808 0.146
ENSG00000165699 E067 25.6060734 0.0029517457 9.552054e-01 9.758824e-01 9 132925735 132925739 5 - 1.397 1.439 0.146
ENSG00000165699 E068 0.9911135 0.0132395651 7.494692e-01 8.364193e-01 9 132925740 132927200 1461 - 0.259 0.336 0.515
ENSG00000165699 E069 52.8244374 0.0048769213 8.796566e-01 9.267661e-01 9 132927201 132927304 104 - 1.713 1.742 0.100
ENSG00000165699 E070 65.2561528 0.0007511367 5.523359e-02 1.183906e-01 9 132928767 132928952 186 - 1.839 1.793 -0.156
ENSG00000165699 E071 0.0000000       9 132928953 132928955 3 -      
ENSG00000165699 E072 1.8684037 0.0177504125 9.000989e-01 9.402580e-01 9 132931209 132931304 96 - 0.463 0.469 0.028
ENSG00000165699 E073 1.6856552 0.0108145716 2.754232e-01 4.147242e-01 9 132931305 132931427 123 - 0.502 0.336 -0.901
ENSG00000165699 E074 0.6213751 0.0212496776 4.522052e-01 5.930820e-01 9 132934466 132934540 75 - 0.259 0.143 -1.070
ENSG00000165699 E075 34.1578878 0.0107494474 5.196446e-01 6.537160e-01 9 132935033 132935095 63 - 1.548 1.534 -0.045
ENSG00000165699 E076 1.7659906 0.0137749649 5.598661e-02 1.196743e-01 9 132939071 132939276 206 - 0.259 0.613 1.926
ENSG00000165699 E077 1.1792493 0.0176395678 4.294195e-01 5.721375e-01 9 132940735 132941395 661 - 0.373 0.250 -0.803
ENSG00000165699 E078 0.5117906 0.2074981962 7.873016e-01 8.637776e-01 9 132941396 132941419 24 - 0.188 0.144 -0.462
ENSG00000165699 E079 0.9169293 0.1602049969 3.406870e-01 4.846383e-01 9 132941420 132941492 73 - 0.189 0.402 1.486
ENSG00000165699 E080 0.9179615 0.0139446502 7.530288e-01 8.390898e-01 9 132941493 132942214 722 - 0.259 0.335 0.513
ENSG00000165699 E081 0.7771569 0.0153129397 2.757449e-01 4.151161e-01 9 132942215 132942426 212 - 0.320 0.143 -1.485
ENSG00000165699 E082 3.4977414 0.0201334612 1.769248e-01 2.972417e-01 9 132943468 132943654 187 - 0.538 0.780 1.038
ENSG00000165699 E083 1.1811367 0.4779617800 7.532927e-01 8.392901e-01 9 132943655 132943706 52 - 0.259 0.447 1.144
ENSG00000165699 E084 14.7672178 0.0114229180 6.393008e-01 7.527026e-01 9 132944543 132944546 4 - 1.156 1.239 0.293
ENSG00000165699 E085 16.3452736 0.0083224715 2.378655e-01 3.716643e-01 9 132944547 132944571 25 - 1.165 1.311 0.516
ENSG00000165699 E086 20.3815285 0.0009344257 8.241105e-01 8.891923e-01 9 132944572 132944834 263 - 1.302 1.358 0.193
ENSG00000165699 E087 0.0000000       9 132945185 132945375 191 -      
ENSG00000165699 E088 0.0000000       9 132946759 132946874 116 -