ENSG00000164068

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000327697 ENSG00000164068 HEK293_OSMI2_2hA HEK293_TMG_2hB RNF123 protein_coding protein_coding 32.9387 47.33366 24.90076 3.497813 0.4569755 -0.9264022 16.189249 23.4219138 12.0769937 2.3014515 0.43131027 -0.9550193 0.49115417 0.49506667 0.48470000 -0.01036667 9.536785e-01 2.000358e-27 FALSE TRUE
ENST00000433785 ENSG00000164068 HEK293_OSMI2_2hA HEK293_TMG_2hB RNF123 protein_coding protein_coding 32.9387 47.33366 24.90076 3.497813 0.4569755 -0.9264022 3.898723 11.2363370 0.0000000 1.7019241 0.00000000 -10.1352395 0.08924167 0.23813333 0.00000000 -0.23813333 2.000358e-27 2.000358e-27 FALSE TRUE
ENST00000444689 ENSG00000164068 HEK293_OSMI2_2hA HEK293_TMG_2hB RNF123 protein_coding nonsense_mediated_decay 32.9387 47.33366 24.90076 3.497813 0.4569755 -0.9264022 0.922918 0.8703904 2.0157089 0.6905991 0.03691938 1.2022116 0.02931667 0.01656667 0.08106667 0.06450000 1.745097e-01 2.000358e-27 FALSE FALSE
ENST00000454491 ENSG00000164068 HEK293_OSMI2_2hA HEK293_TMG_2hB RNF123 protein_coding protein_coding 32.9387 47.33366 24.90076 3.497813 0.4569755 -0.9264022 3.412596 3.7979513 4.5990730 0.5819017 0.14491537 0.2754616 0.11209583 0.07956667 0.18503333 0.10546667 5.655859e-06 2.000358e-27   FALSE
ENST00000487805 ENSG00000164068 HEK293_OSMI2_2hA HEK293_TMG_2hB RNF123 protein_coding retained_intron 32.9387 47.33366 24.90076 3.497813 0.4569755 -0.9264022 1.868145 1.0516380 1.6680353 0.1694148 0.12609997 0.6604811 0.06385833 0.02190000 0.06686667 0.04496667 5.490043e-07 2.000358e-27 FALSE TRUE
ENST00000498376 ENSG00000164068 HEK293_OSMI2_2hA HEK293_TMG_2hB RNF123 protein_coding retained_intron 32.9387 47.33366 24.90076 3.497813 0.4569755 -0.9264022 1.665890 2.3236271 0.8163458 0.7522544 0.34774778 -1.4977565 0.05094167 0.05193333 0.03260000 -0.01933333 7.431516e-01 2.000358e-27   FALSE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000164068 E001 3.638671 0.0121715081 6.569660e-01 7.664091e-01 3 49689538 49689542 5 + 0.585 0.659 0.323
ENSG00000164068 E002 4.371907 0.0055966195 9.086706e-01 9.459812e-01 3 49689543 49689543 1 + 0.681 0.700 0.080
ENSG00000164068 E003 15.613402 0.0011296218 2.166473e-01 3.463500e-01 3 49689544 49689555 12 + 1.246 1.137 -0.385
ENSG00000164068 E004 17.856840 0.0010114126 2.585450e-01 3.958218e-01 3 49689556 49689556 1 + 1.290 1.197 -0.330
ENSG00000164068 E005 19.920549 0.0009055751 4.701798e-01 6.093833e-01 3 49689557 49689561 5 + 1.311 1.254 -0.198
ENSG00000164068 E006 20.578455 0.0008934107 3.971143e-01 5.408934e-01 3 49689562 49689564 3 + 1.331 1.265 -0.230
ENSG00000164068 E007 20.211837 0.0009112906 4.326580e-01 5.751095e-01 3 49689565 49689565 1 + 1.321 1.260 -0.214
ENSG00000164068 E008 61.334237 0.0030641664 3.688431e-01 5.132561e-01 3 49689566 49689606 41 + 1.774 1.729 -0.153
ENSG00000164068 E009 34.028507 0.0006819136 6.153861e-07 5.349073e-06 3 49689607 49689822 216 + 1.685 1.384 -1.032
ENSG00000164068 E010 97.234571 0.0068201033 5.492828e-02 1.178749e-01 3 49691130 49691165 36 + 2.011 1.911 -0.334
ENSG00000164068 E011 136.876255 0.0016500640 3.604385e-03 1.202268e-02 3 49691166 49691247 82 + 2.161 2.057 -0.348
ENSG00000164068 E012 139.555964 0.0047849150 2.784233e-03 9.627376e-03 3 49691425 49691509 85 + 2.187 2.058 -0.433
ENSG00000164068 E013 3.716266 0.0194691974 5.687799e-01 6.954011e-01 3 49697045 49697142 98 + 0.681 0.593 -0.379
ENSG00000164068 E014 161.057116 0.0035220814 1.450170e-03 5.474243e-03 3 49697143 49697222 80 + 2.245 2.122 -0.411
ENSG00000164068 E015 154.532094 0.0035597780 1.124953e-04 5.793479e-04 3 49697363 49697457 95 + 2.249 2.095 -0.514
ENSG00000164068 E016 126.039199 0.0011975062 7.045636e-07 6.046328e-06 3 49697885 49697939 55 + 2.174 1.997 -0.591
ENSG00000164068 E017 145.682493 0.0002802693 1.509657e-08 1.800319e-07 3 49698052 49698137 86 + 2.233 2.060 -0.578
ENSG00000164068 E018 152.533710 0.0036645478 1.984133e-05 1.231612e-04 3 49698440 49698526 87 + 2.253 2.081 -0.575
ENSG00000164068 E019 143.207521 0.0082117991 2.930905e-02 7.060581e-02 3 49698755 49698822 68 + 2.189 2.075 -0.381
ENSG00000164068 E020 168.946215 0.0002820182 6.082772e-03 1.882915e-02 3 49698980 49699105 126 + 2.234 2.155 -0.263
ENSG00000164068 E021 158.563114 0.0006663781 5.681195e-02 1.211392e-01 3 49699468 49699582 115 + 2.195 2.137 -0.195
ENSG00000164068 E022 153.707259 0.0002349215 6.792107e-02 1.399152e-01 3 49699668 49699772 105 + 2.176 2.122 -0.181
ENSG00000164068 E023 9.923666 0.0024310854 3.501644e-09 4.693477e-08 3 49699773 49700226 454 + 1.331 0.719 -2.267
ENSG00000164068 E024 149.023725 0.0007193006 4.823750e-02 1.060563e-01 3 49700227 49700352 126 + 2.169 2.107 -0.208
ENSG00000164068 E025 5.180362 0.0042319518 2.599453e-02 6.393740e-02 3 49700353 49700471 119 + 0.934 0.639 -1.181
ENSG00000164068 E026 84.163377 0.0066481670 2.863189e-01 4.267130e-01 3 49700472 49700499 28 + 1.920 1.866 -0.180
ENSG00000164068 E027 111.113396 0.0064212059 2.442414e-01 3.791881e-01 3 49700500 49700564 65 + 2.040 1.986 -0.182
ENSG00000164068 E028 127.502300 0.0060606775 2.987710e-01 4.402438e-01 3 49700636 49700709 74 + 2.092 2.047 -0.148
ENSG00000164068 E029 150.368563 0.0090156947 1.651601e-01 2.818938e-01 3 49701491 49701608 118 + 2.180 2.112 -0.228
ENSG00000164068 E030 147.359868 0.0085464123 2.614718e-01 3.991061e-01 3 49701811 49701910 100 + 2.161 2.107 -0.181
ENSG00000164068 E031 3.021627 0.0049682175 1.161772e-01 2.145209e-01 3 49701911 49702082 172 + 0.722 0.478 -1.088
ENSG00000164068 E032 122.093213 0.0012472655 6.135736e-01 7.322356e-01 3 49702083 49702144 62 + 2.051 2.036 -0.052
ENSG00000164068 E033 144.150125 0.0002533036 9.387698e-01 9.655432e-01 3 49702334 49702405 72 + 2.110 2.110 0.000
ENSG00000164068 E034 172.782249 0.0002077742 2.288396e-02 5.749960e-02 3 49702633 49702753 121 + 2.136 2.208 0.240
ENSG00000164068 E035 165.544580 0.0002135438 4.450109e-01 5.865703e-01 3 49703427 49703528 102 + 2.149 2.175 0.087
ENSG00000164068 E036 205.675934 0.0005360758 5.283081e-02 1.141848e-01 3 49704650 49704756 107 + 2.217 2.277 0.201
ENSG00000164068 E037 13.217761 0.0014568969 8.399997e-03 2.478899e-02 3 49704757 49704983 227 + 1.269 1.025 -0.873
ENSG00000164068 E038 184.954367 0.0014772756 1.518328e-02 4.090367e-02 3 49704984 49705081 98 + 2.151 2.240 0.297
ENSG00000164068 E039 192.882470 0.0052632761 4.097918e-01 5.534205e-01 3 49705082 49705182 101 + 2.208 2.250 0.142
ENSG00000164068 E040 5.517606 0.0443846799 1.965472e-01 3.219235e-01 3 49705183 49705186 4 + 0.909 0.702 -0.817
ENSG00000164068 E041 221.046634 0.0034339547 7.206354e-01 8.152318e-01 3 49705534 49705679 146 + 2.282 2.302 0.068
ENSG00000164068 E042 30.125578 0.0006822572 6.258755e-07 5.431029e-06 3 49705680 49705981 302 + 1.645 1.329 -1.089
ENSG00000164068 E043 196.989255 0.0015043835 1.046077e-01 1.975263e-01 3 49705982 49706065 84 + 2.278 2.230 -0.161
ENSG00000164068 E044 236.481516 0.0016803071 7.530183e-01 8.390852e-01 3 49706791 49706898 108 + 2.313 2.329 0.052
ENSG00000164068 E045 174.721320 0.0004534061 6.755909e-01 7.808091e-01 3 49712479 49712549 71 + 2.179 2.195 0.053
ENSG00000164068 E046 219.336227 0.0003833833 1.890285e-01 3.125195e-01 3 49712550 49712656 107 + 2.261 2.300 0.131
ENSG00000164068 E047 20.270105 0.0034984373 6.292590e-06 4.380511e-05 3 49712657 49712829 173 + 1.503 1.145 -1.251
ENSG00000164068 E048 14.982111 0.0011736666 1.667257e-06 1.319038e-05 3 49712830 49712892 63 + 1.410 0.997 -1.468
ENSG00000164068 E049 42.993071 0.0131838457 8.094640e-10 1.221041e-08 3 49712893 49713512 620 + 1.868 1.404 -1.580
ENSG00000164068 E050 139.653895 0.0024401587 9.767540e-01 9.894772e-01 3 49713513 49713526 14 + 2.093 2.098 0.016
ENSG00000164068 E051 191.626436 0.0002647432 6.906925e-01 7.923365e-01 3 49713527 49713587 61 + 2.221 2.235 0.047
ENSG00000164068 E052 201.190727 0.0002336553 8.397174e-02 1.657622e-01 3 49713738 49713825 88 + 2.214 2.266 0.172
ENSG00000164068 E053 4.349069 0.0053204773 3.551559e-02 8.264534e-02 3 49713826 49713909 84 + 0.883 0.591 -1.197
ENSG00000164068 E054 189.702342 0.0002396043 3.720374e-01 5.165174e-01 3 49713910 49713997 88 + 2.208 2.236 0.094
ENSG00000164068 E055 203.193978 0.0003697406 5.445194e-01 6.749736e-01 3 49714090 49714174 85 + 2.242 2.262 0.067
ENSG00000164068 E056 0.000000       3 49715492 49715574 83 +      
ENSG00000164068 E057 268.082618 0.0001626282 4.034192e-02 9.165285e-02 3 49715575 49715714 140 + 2.339 2.392 0.175
ENSG00000164068 E058 269.491056 0.0002642493 3.152532e-04 1.441907e-03 3 49715822 49716010 189 + 2.312 2.405 0.310
ENSG00000164068 E059 1.229513 0.1197392541 4.679035e-03 1.503722e-02 3 49716011 49716043 33 + 0.637 0.088 -3.895
ENSG00000164068 E060 171.262304 0.0044337030 3.281639e-03 1.109618e-02 3 49716102 49716177 76 + 2.085 2.222 0.458
ENSG00000164068 E061 195.424543 0.0015542501 7.262522e-09 9.179764e-08 3 49716393 49716477 85 + 2.083 2.292 0.698
ENSG00000164068 E062 4.838080 0.0060437389 6.734228e-01 7.791265e-01 3 49718104 49718262 159 + 0.760 0.701 -0.240
ENSG00000164068 E063 5.594178 0.2063481920 8.168430e-01 8.841556e-01 3 49718392 49718604 213 + 0.759 0.768 0.034
ENSG00000164068 E064 153.141858 0.0002655097 2.722495e-14 8.393303e-13 3 49720511 49720558 48 + 1.927 2.196 0.902
ENSG00000164068 E065 216.075762 0.0024035219 4.707293e-10 7.402528e-09 3 49720559 49720653 95 + 2.103 2.342 0.797
ENSG00000164068 E066 2.615240 0.0327336973 6.839488e-01 7.870222e-01 3 49720654 49720799 146 + 0.462 0.539 0.374
ENSG00000164068 E067 223.878138 0.0059061667 3.299860e-05 1.943024e-04 3 49720800 49720894 95 + 2.149 2.351 0.675
ENSG00000164068 E068 14.311671 0.0367380666 9.638898e-01 9.812095e-01 3 49720895 49721019 125 + 1.141 1.151 0.037
ENSG00000164068 E069 262.879383 0.0081299466 1.510271e-03 5.669375e-03 3 49721020 49721105 86 + 2.246 2.415 0.566
ENSG00000164068 E070 4.688528 0.0085135193 9.708711e-01 9.858174e-01 3 49721106 49721184 79 + 0.722 0.719 -0.013
ENSG00000164068 E071 421.620514 0.0041507785 4.105841e-04 1.814795e-03 3 49721185 49721529 345 + 2.476 2.612 0.454