ENSG00000163625

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000295888 ENSG00000163625 HEK293_OSMI2_2hA HEK293_TMG_2hB WDFY3 protein_coding protein_coding 5.484342 3.734391 6.294238 0.6472181 0.3686686 0.7515908 1.6889467 1.1673135 2.1274085 0.03885252 0.1019288 0.8603641 0.31111667 0.32793333 0.33973333 0.01180000 0.928985126 0.002190504 FALSE TRUE
ENST00000425179 ENSG00000163625 HEK293_OSMI2_2hA HEK293_TMG_2hB WDFY3 protein_coding retained_intron 5.484342 3.734391 6.294238 0.6472181 0.3686686 0.7515908 0.9901155 1.9992139 0.1380794 0.19702336 0.1380794 -3.7621885 0.22121667 0.54816667 0.02380000 -0.52436667 0.002190504 0.002190504 FALSE TRUE
ENST00000514071 ENSG00000163625 HEK293_OSMI2_2hA HEK293_TMG_2hB WDFY3 protein_coding protein_coding 5.484342 3.734391 6.294238 0.6472181 0.3686686 0.7515908 0.1802355 0.0000000 0.5644915 0.00000000 0.2822788 5.8442137 0.02822917 0.00000000 0.08683333 0.08683333 0.248288154 0.002190504   FALSE
ENST00000514711 ENSG00000163625 HEK293_OSMI2_2hA HEK293_TMG_2hB WDFY3 protein_coding protein_coding 5.484342 3.734391 6.294238 0.6472181 0.3686686 0.7515908 0.9546292 0.2876193 0.5660752 0.28761927 0.1183811 0.9527893 0.16606667 0.05746667 0.08853333 0.03106667 0.445858659 0.002190504 FALSE TRUE
MSTRG.25110.2 ENSG00000163625 HEK293_OSMI2_2hA HEK293_TMG_2hB WDFY3 protein_coding   5.484342 3.734391 6.294238 0.6472181 0.3686686 0.7515908 1.2413212 0.2238276 1.8602727 0.13714081 0.1663956 2.9997313 0.20454167 0.05146667 0.29476667 0.24330000 0.018477952 0.002190504 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000163625 E001 118.1313829 0.0277587077 2.952576e-06 2.212383e-05 4 84669597 84671250 1654 - 1.864 2.279 1.391
ENSG00000163625 E002 86.6877963 0.0107764658 1.471845e-03 5.545345e-03 4 84671251 84672290 1040 - 1.830 2.047 0.729
ENSG00000163625 E003 61.1736846 0.0005728069 1.781728e-19 1.073952e-17 4 84672291 84672631 341 - 1.572 2.004 1.461
ENSG00000163625 E004 96.9875226 0.0003235998 3.741212e-19 2.167466e-17 4 84672632 84672991 360 - 1.818 2.162 1.153
ENSG00000163625 E005 53.7331605 0.0046250413 1.961867e-07 1.882921e-06 4 84677199 84677396 198 - 1.581 1.899 1.074
ENSG00000163625 E006 39.4045564 0.0005683935 3.828037e-05 2.217090e-04 4 84678168 84678279 112 - 1.476 1.730 0.867
ENSG00000163625 E007 60.4981042 0.0005265431 2.402612e-07 2.268127e-06 4 84678919 84679242 324 - 1.652 1.913 0.882
ENSG00000163625 E008 37.1050470 0.0006106244 1.370069e-02 3.754057e-02 4 84682374 84682470 97 - 1.488 1.655 0.571
ENSG00000163625 E009 0.1472490 0.0431493579 1.000000e+00   4 84682471 84682948 478 - 0.083 0.000 -9.956
ENSG00000163625 E010 50.8407084 0.0004658909 3.734566e-05 2.168390e-04 4 84683943 84684125 183 - 1.600 1.828 0.771
ENSG00000163625 E011 43.3959934 0.0005917187 7.829944e-04 3.198687e-03 4 84688086 84688265 180 - 1.546 1.750 0.691
ENSG00000163625 E012 42.2793294 0.0005626122 3.127011e-02 7.442819e-02 4 84690506 84690664 159 - 1.559 1.701 0.481
ENSG00000163625 E013 34.0737091 0.0006999939 5.570741e-02 1.191905e-01 4 84691631 84691725 95 - 1.470 1.609 0.477
ENSG00000163625 E014 30.7108828 0.0006879278 1.809251e-01 3.023723e-01 4 84691726 84691785 60 - 1.437 1.546 0.372
ENSG00000163625 E015 40.9702331 0.0014927876 4.350060e-02 9.747079e-02 4 84692885 84693032 148 - 1.544 1.683 0.475
ENSG00000163625 E016 38.8033717 0.0005877793 5.728474e-01 6.988982e-01 4 84695970 84696182 213 - 1.554 1.609 0.188
ENSG00000163625 E017 24.6883206 0.0008253743 1.944276e-01 3.193186e-01 4 84696732 84696823 92 - 1.410 1.334 -0.262
ENSG00000163625 E018 27.7740030 0.0090410303 6.750316e-01 7.804239e-01 4 84702353 84702506 154 - 1.437 1.426 -0.038
ENSG00000163625 E019 20.2411339 0.0009094575 3.442178e-01 4.882819e-01 4 84704338 84704444 107 - 1.267 1.363 0.335
ENSG00000163625 E020 32.4738988 0.0041998870 4.038626e-01 5.476306e-01 4 84705394 84705511 118 - 1.473 1.552 0.270
ENSG00000163625 E021 33.1972826 0.0020624886 3.106172e-01 4.530375e-01 4 84708909 84709028 120 - 1.482 1.569 0.300
ENSG00000163625 E022 25.1279518 0.0015997677 9.388996e-01 9.656393e-01 4 84709293 84709347 55 - 1.391 1.408 0.057
ENSG00000163625 E023 26.7911887 0.0007545713 1.696367e-01 2.877277e-01 4 84713159 84713239 81 - 1.376 1.493 0.402
ENSG00000163625 E024 18.2071940 0.0009764691 1.663604e-01 2.834649e-01 4 84715298 84715383 86 - 1.209 1.344 0.473
ENSG00000163625 E025 18.9664968 0.0073485312 4.951878e-01 6.320318e-01 4 84716896 84717016 121 - 1.242 1.325 0.290
ENSG00000163625 E026 25.8200520 0.0295936082 9.657021e-01 9.824472e-01 4 84718422 84718570 149 - 1.392 1.432 0.138
ENSG00000163625 E027 28.0629446 0.0044918959 2.853172e-01 4.256302e-01 4 84721409 84721572 164 - 1.457 1.400 -0.197
ENSG00000163625 E028 30.6328644 0.0009206683 4.014249e-02 9.129940e-02 4 84724426 84724594 169 - 1.511 1.391 -0.414
ENSG00000163625 E029 12.7985813 0.0015291293 6.061410e-01 7.263731e-01 4 84726861 84726911 51 - 1.129 1.098 -0.109
ENSG00000163625 E030 30.2207562 0.0007582410 6.690624e-03 2.042145e-02 4 84733382 84733609 228 - 1.522 1.354 -0.581
ENSG00000163625 E031 19.7256512 0.0009316936 2.714800e-01 4.102500e-01 4 84735043 84735105 63 - 1.314 1.245 -0.245
ENSG00000163625 E032 14.5242840 0.0013753172 2.383589e-02 5.947209e-02 4 84735106 84735120 15 - 1.226 1.023 -0.731
ENSG00000163625 E033 33.5469493 0.0006344278 1.641844e-02 4.365359e-02 4 84736170 84736327 158 - 1.554 1.417 -0.472
ENSG00000163625 E034 31.9200220 0.0006930277 3.324581e-02 7.828375e-02 4 84737184 84737366 183 - 1.530 1.408 -0.420
ENSG00000163625 E035 20.6380120 0.0009262830 1.533173e-01 2.661878e-01 4 84739010 84739119 110 - 1.340 1.245 -0.334
ENSG00000163625 E036 0.0000000       4 84739120 84739330 211 -      
ENSG00000163625 E037 27.0560782 0.0007207118 5.696911e-03 1.780871e-02 4 84740187 84740416 230 - 1.476 1.292 -0.638
ENSG00000163625 E038 16.6774061 0.0329136775 1.359730e-01 2.424452e-01 4 84741761 84741921 161 - 1.268 1.118 -0.531
ENSG00000163625 E039 18.6289852 0.0022347957 2.310144e-03 8.182667e-03 4 84743700 84743799 100 - 1.340 1.081 -0.920
ENSG00000163625 E040 0.5911862 0.0183429017 1.823598e-01 3.041770e-01 4 84751248 84751482 235 - 0.266 0.000 -11.956
ENSG00000163625 E041 32.9290000 0.0006497495 1.811722e-04 8.830310e-04 4 84751483 84751716 234 - 1.572 1.334 -0.818
ENSG00000163625 E042 25.1875570 0.0007621029 3.118079e-02 7.425092e-02 4 84753697 84753876 180 - 1.434 1.292 -0.494
ENSG00000163625 E043 14.8039316 0.0012301030 5.593409e-02 1.195809e-01 4 84755266 84755400 135 - 1.226 1.062 -0.586
ENSG00000163625 E044 8.9267282 0.0078497093 7.534409e-01 8.393782e-01 4 84756926 84756970 45 - 0.975 0.956 -0.070
ENSG00000163625 E045 22.3104381 0.0008658714 6.807603e-01 7.846152e-01 4 84756971 84757161 191 - 1.344 1.334 -0.036
ENSG00000163625 E046 24.2826579 0.0007823476 3.590580e-02 8.339969e-02 4 84765810 84766027 218 - 1.420 1.280 -0.487
ENSG00000163625 E047 18.0331487 0.0010271887 1.363744e-01 2.430019e-01 4 84766252 84766372 121 - 1.287 1.178 -0.385
ENSG00000163625 E048 12.4866123 0.0016112812 5.875163e-01 7.107892e-01 4 84772835 84772929 95 - 1.115 1.081 -0.123
ENSG00000163625 E049 19.9448488 0.0038667124 1.058117e-02 3.016616e-02 4 84774820 84774981 162 - 1.357 1.148 -0.735
ENSG00000163625 E050 16.0763984 0.0011378416 2.891778e-04 1.335834e-03 4 84775065 84775138 74 - 1.296 0.956 -1.225
ENSG00000163625 E051 19.2096629 0.0009530650 9.418009e-04 3.760428e-03 4 84778503 84778655 153 - 1.357 1.081 -0.977
ENSG00000163625 E052 23.3497460 0.0026936443 1.236872e-03 4.765736e-03 4 84780108 84780298 191 - 1.431 1.178 -0.884
ENSG00000163625 E053 18.6398297 0.0060075389 2.056702e-03 7.400915e-03 4 84782963 84783074 112 - 1.344 1.063 -0.998
ENSG00000163625 E054 18.8813458 0.0011091332 7.824892e-03 2.334161e-02 4 84785979 84786139 161 - 1.332 1.116 -0.764
ENSG00000163625 E055 21.2824854 0.0117384337 2.516533e-03 8.813354e-03 4 84787482 84787713 232 - 1.398 1.117 -0.991
ENSG00000163625 E056 17.7538329 0.0014355057 3.383720e-03 1.138991e-02 4 84789726 84789907 182 - 1.314 1.062 -0.896
ENSG00000163625 E057 21.8570404 0.0010024140 1.414545e-05 9.073038e-05 4 84794519 84794737 219 - 1.424 1.062 -1.276
ENSG00000163625 E058 12.9226280 0.0013374714 1.670764e-02 4.429285e-02 4 84794879 84794979 101 - 1.186 0.956 -0.837
ENSG00000163625 E059 21.5639463 0.0009675930 5.551618e-03 1.742297e-02 4 84796521 84796752 232 - 1.388 1.178 -0.737
ENSG00000163625 E060 12.3807713 0.0058754739 1.355439e-01 2.418748e-01 4 84797996 84798108 113 - 1.142 1.002 -0.509
ENSG00000163625 E061 9.7420058 0.0033486977 4.044217e-02 9.183436e-02 4 84801650 84801781 132 - 1.070 0.847 -0.837
ENSG00000163625 E062 4.3503208 0.0038029366 1.256741e-01 2.281061e-01 4 84801782 84801789 8 - 0.767 0.545 -0.951
ENSG00000163625 E063 11.1724448 0.0015360444 5.565366e-05 3.099198e-04 4 84801790 84801864 75 - 1.174 0.700 -1.794
ENSG00000163625 E064 17.2391658 0.0010911323 1.743566e-06 1.374187e-05 4 84803290 84803467 178 - 1.344 0.877 -1.693
ENSG00000163625 E065 0.1451727 0.0434015919 1.000000e+00   4 84803883 84804174 292 - 0.083 0.000 -9.956
ENSG00000163625 E066 3.5721447 0.0526285607 3.604183e-01 5.047316e-01 4 84808334 84808417 84 - 0.681 0.546 -0.593
ENSG00000163625 E067 4.4090146 0.0258792023 7.264412e-01 8.194426e-01 4 84808866 84809886 1021 - 0.735 0.698 -0.152
ENSG00000163625 E068 28.8403470 0.0021261407 1.988883e-09 2.785863e-08 4 84809887 84810344 458 - 1.562 1.081 -1.683
ENSG00000163625 E069 18.1586940 0.0014748372 9.495032e-04 3.786082e-03 4 84817392 84817585 194 - 1.332 1.043 -1.027
ENSG00000163625 E070 13.4626079 0.0013018985 1.939309e-03 7.038242e-03 4 84820085 84820186 102 - 1.215 0.905 -1.132
ENSG00000163625 E071 32.9022394 0.0007168042 1.322571e-07 1.312711e-06 4 84821084 84821551 468 - 1.596 1.232 -1.257
ENSG00000163625 E072 15.6453706 0.0013716528 2.499069e-03 8.760129e-03 4 84826815 84826981 167 - 1.277 1.001 -0.990
ENSG00000163625 E073 18.0967333 0.0060751238 2.261943e-04 1.075571e-03 4 84829004 84829190 187 - 1.352 1.001 -1.254
ENSG00000163625 E074 15.5051191 0.0169317814 2.688270e-03 9.339018e-03 4 84831413 84831605 193 - 1.286 0.954 -1.198
ENSG00000163625 E075 13.7807418 0.0346097203 1.169810e-03 4.538357e-03 4 84836929 84837090 162 - 1.252 0.815 -1.608
ENSG00000163625 E076 6.3119158 0.0046297976 2.338741e-04 1.107890e-03 4 84841154 84841191 38 - 0.965 0.399 -2.450
ENSG00000163625 E077 10.2185164 0.0027280771 3.484742e-06 2.571772e-05 4 84841192 84841263 72 - 1.155 0.545 -2.405
ENSG00000163625 E078 0.7448917 0.0799154957 1.297026e-01 2.337368e-01 4 84844456 84844509 54 - 0.313 0.000 -12.279
ENSG00000163625 E079 0.3332198 0.0284026837 5.520580e-01   4 84849673 84849901 229 - 0.083 0.177 1.250
ENSG00000163625 E080 12.9987919 0.0197941758 8.153467e-04 3.314059e-03 4 84849902 84850025 124 - 1.226 0.814 -1.521
ENSG00000163625 E081 12.8911715 0.0091059461 1.106626e-04 5.709341e-04 4 84860412 84860563 152 - 1.231 0.779 -1.679
ENSG00000163625 E082 6.4204551 0.0031821854 8.578743e-04 3.465651e-03 4 84860564 84860622 59 - 0.965 0.478 -2.036
ENSG00000163625 E083 1.2157955 0.0103929865 7.239731e-01 8.176419e-01 4 84879406 84879494 89 - 0.355 0.302 -0.335
ENSG00000163625 E084 6.0570318 0.0221999742 1.098870e-03 4.299945e-03 4 84896911 84897010 100 - 0.945 0.399 -2.371
ENSG00000163625 E085 6.0571586 0.0026348574 3.785328e-04 1.691518e-03 4 84932270 84932363 94 - 0.945 0.399 -2.374
ENSG00000163625 E086 12.3114596 0.0019206293 1.117343e-03 4.361244e-03 4 84966209 84967111 903 - 1.192 0.846 -1.273