ENSG00000162402

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000294383 ENSG00000162402 HEK293_OSMI2_2hA HEK293_TMG_2hB USP24 protein_coding protein_coding 17.19942 6.729858 24.7527 0.6264784 0.6139588 1.877378 7.1272737 4.86045317 9.7205718 0.63099037 0.27786593 0.9984686 0.48745417 0.7327000 0.39266667 -0.34003333 2.456655e-02 2.487219e-42 FALSE TRUE
ENST00000472566 ENSG00000162402 HEK293_OSMI2_2hA HEK293_TMG_2hB USP24 protein_coding retained_intron 17.19942 6.729858 24.7527 0.6264784 0.6139588 1.877378 0.8386809 0.06579993 1.2975400 0.06579993 0.31492784 4.1085147 0.05213333 0.0120000 0.05190000 0.03990000 1.789072e-01 2.487219e-42 FALSE FALSE
ENST00000480962 ENSG00000162402 HEK293_OSMI2_2hA HEK293_TMG_2hB USP24 protein_coding processed_transcript 17.19942 6.729858 24.7527 0.6264784 0.6139588 1.877378 0.8478539 0.78536346 0.6911213 0.39831461 0.11525064 -0.1819501 0.05132917 0.1066667 0.02813333 -0.07853333 6.875608e-01 2.487219e-42 FALSE FALSE
ENST00000484447 ENSG00000162402 HEK293_OSMI2_2hA HEK293_TMG_2hB USP24 protein_coding protein_coding 17.19942 6.729858 24.7527 0.6264784 0.6139588 1.877378 1.9571435 0.92855387 2.0832276 0.60296035 0.06725436 1.1572177 0.14629167 0.1364000 0.08416667 -0.05223333 1.000000e+00 2.487219e-42 FALSE TRUE
MSTRG.1258.3 ENSG00000162402 HEK293_OSMI2_2hA HEK293_TMG_2hB USP24 protein_coding   17.19942 6.729858 24.7527 0.6264784 0.6139588 1.877378 1.1863050 0.03995593 1.9162715 0.03995593 0.25162414 5.2690112 0.05330000 0.0055000 0.07723333 0.07173333 2.015580e-05 2.487219e-42 TRUE TRUE
MSTRG.1258.4 ENSG00000162402 HEK293_OSMI2_2hA HEK293_TMG_2hB USP24 protein_coding   17.19942 6.729858 24.7527 0.6264784 0.6139588 1.877378 4.9142099 0.00000000 8.5850953 0.00000000 0.15746889 9.7473698 0.19416250 0.0000000 0.34730000 0.34730000 2.487219e-42 2.487219e-42 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000162402 E001 564.4743697 0.0153435141 7.487762e-15 2.514685e-13 1 55066359 55067587 1229 - 2.497 3.008 1.702
ENSG00000162402 E002 374.9169176 0.0040807609 3.436758e-24 3.478011e-22 1 55067588 55068495 908 - 2.365 2.780 1.382
ENSG00000162402 E003 159.4607471 0.0002930753 3.776904e-26 4.549056e-24 1 55068496 55068744 249 - 2.010 2.388 1.266
ENSG00000162402 E004 314.2062372 0.0051560956 5.457456e-06 3.851794e-05 1 55068745 55069107 363 - 2.359 2.599 0.800
ENSG00000162402 E005 5.3979369 0.0573686027 1.450250e-01 2.548637e-01 1 55071273 55071490 218 - 0.666 0.963 1.169
ENSG00000162402 E006 2.5433525 0.0555504529 9.554414e-01 9.760393e-01 1 55071813 55071813 1 - 0.498 0.549 0.241
ENSG00000162402 E007 183.5509821 0.0117095613 9.912019e-03 2.854584e-02 1 55071814 55071924 111 - 2.137 2.350 0.710
ENSG00000162402 E008 155.6949213 0.0004171716 2.376578e-02 5.933444e-02 1 55072317 55072403 87 - 2.091 2.225 0.451
ENSG00000162402 E009 128.6168011 0.0023161969 2.354966e-02 5.888409e-02 1 55072786 55072861 76 - 2.002 2.156 0.513
ENSG00000162402 E010 1.8360367 0.1053413867 8.842256e-02 1.727054e-01 1 55072862 55072992 131 - 0.299 0.679 1.928
ENSG00000162402 E011 111.9767108 0.0002883915 3.114747e-03 1.060360e-02 1 55073828 55073906 79 - 1.935 2.107 0.574
ENSG00000162402 E012 115.1637576 0.0019410659 9.162082e-02 1.776657e-01 1 55075457 55075523 67 - 1.958 2.090 0.440
ENSG00000162402 E013 111.5970208 0.0002988358 2.385686e-02 5.951084e-02 1 55077235 55077300 66 - 1.940 2.087 0.490
ENSG00000162402 E014 118.8446065 0.0002568655 1.751311e-03 6.444718e-03 1 55078538 55078651 114 - 1.960 2.134 0.584
ENSG00000162402 E015 130.2029097 0.0028734588 3.510944e-04 1.584529e-03 1 55079538 55079659 122 - 1.985 2.198 0.714
ENSG00000162402 E016 114.2884197 0.0017084421 2.444701e-03 8.596589e-03 1 55081322 55081386 65 - 1.938 2.124 0.625
ENSG00000162402 E017 103.7923219 0.0017045665 1.153604e-02 3.243352e-02 1 55081387 55081424 38 - 1.903 2.073 0.572
ENSG00000162402 E018 123.5420607 0.0016165382 1.488588e-02 4.023348e-02 1 55083272 55083364 93 - 1.981 2.140 0.533
ENSG00000162402 E019 91.0740720 0.0018091854 1.544415e-01 2.676773e-01 1 55083772 55083842 71 - 1.858 1.985 0.426
ENSG00000162402 E020 64.0752770 0.0004981074 2.022550e-02 5.195895e-02 1 55083843 55083888 46 - 1.694 1.869 0.591
ENSG00000162402 E021 0.1451727 0.0428746547 1.000000e+00   1 55084393 55084421 29 - 0.066 0.000 -8.808
ENSG00000162402 E022 103.6129251 0.0005097818 9.035640e-01 9.426437e-01 1 55085942 55086038 97 - 1.932 1.998 0.223
ENSG00000162402 E023 9.0095405 0.0023204692 1.202953e-02 3.360056e-02 1 55086039 55086434 396 - 0.990 0.685 -1.190
ENSG00000162402 E024 100.3358131 0.0004692010 9.694825e-01 9.849128e-01 1 55089627 55089740 114 - 1.918 1.981 0.212
ENSG00000162402 E025 100.6298202 0.0003901250 5.734790e-01 6.994075e-01 1 55092023 55092126 104 - 1.914 1.998 0.283
ENSG00000162402 E026 98.6288549 0.0007327730 9.324817e-01 9.614709e-01 1 55092821 55092916 96 - 1.911 1.976 0.219
ENSG00000162402 E027 1.4832131 0.0819791488 6.135048e-02 1.289073e-01 1 55093553 55093936 384 - 0.424 0.000 -12.131
ENSG00000162402 E028 126.4957785 0.0017422764 2.592613e-01 3.966493e-01 1 55093937 55094087 151 - 2.030 2.045 0.049
ENSG00000162402 E029 129.0153601 0.0002783318 4.687435e-01 6.081217e-01 1 55095255 55095396 142 - 2.019 2.107 0.293
ENSG00000162402 E030 112.5502946 0.0053651255 8.477185e-01 9.054340e-01 1 55096498 55096622 125 - 1.964 2.041 0.260
ENSG00000162402 E031 135.2707525 0.0011918025 6.879385e-01 7.901699e-01 1 55096952 55097172 221 - 2.052 2.098 0.156
ENSG00000162402 E032 91.4484925 0.0010933663 7.515827e-01 8.379783e-01 1 55097598 55097717 120 - 1.877 1.951 0.252
ENSG00000162402 E033 110.4446930 0.0002819917 8.854244e-01 9.307052e-01 1 55097943 55098084 142 - 1.962 2.018 0.186
ENSG00000162402 E034 89.7361425 0.0003180806 8.344611e-02 1.649532e-01 1 55098476 55098558 83 - 1.893 1.877 -0.053
ENSG00000162402 E035 91.5032347 0.0003047290 4.466276e-01 5.881161e-01 1 55099771 55099869 99 - 1.888 1.916 0.093
ENSG00000162402 E036 96.7034585 0.0002791035 7.477592e-01 8.351900e-01 1 55100839 55100964 126 - 1.907 1.954 0.159
ENSG00000162402 E037 84.3323160 0.0003299832 4.736461e-01 6.125807e-01 1 55101584 55101703 120 - 1.852 1.880 0.096
ENSG00000162402 E038 76.3059847 0.0016786408 1.020139e-01 1.935817e-01 1 55103876 55104020 145 - 1.824 1.801 -0.079
ENSG00000162402 E039 3.5138301 0.0043448661 2.343813e-01 3.676211e-01 1 55105400 55105521 122 - 0.634 0.466 -0.784
ENSG00000162402 E040 66.5224191 0.0044429269 5.580819e-02 1.193630e-01 1 55106146 55106263 118 - 1.772 1.719 -0.181
ENSG00000162402 E041 115.1292330 0.0002552844 6.943222e-10 1.061640e-08 1 55107239 55107430 192 - 2.035 1.834 -0.677
ENSG00000162402 E042 69.5393737 0.0011849416 2.074491e-06 1.608110e-05 1 55110185 55110246 62 - 1.823 1.616 -0.700
ENSG00000162402 E043 103.5170464 0.0002664931 9.590144e-14 2.734533e-12 1 55120596 55120756 161 - 2.004 1.718 -0.964
ENSG00000162402 E044 65.7830716 0.0003558566 1.789009e-07 1.731227e-06 1 55121436 55121506 71 - 1.802 1.566 -0.798
ENSG00000162402 E045 89.2161443 0.0089826888 9.123972e-05 4.808493e-04 1 55123447 55123602 156 - 1.926 1.733 -0.652
ENSG00000162402 E046 72.9882685 0.0077301600 2.053842e-02 5.262509e-02 1 55124469 55124628 160 - 1.819 1.735 -0.283
ENSG00000162402 E047 100.1932828 0.0008731751 7.760493e-07 6.601061e-06 1 55125320 55125548 229 - 1.969 1.800 -0.568
ENSG00000162402 E048 78.6755598 0.0003703282 3.024533e-06 2.260935e-05 1 55125663 55125758 96 - 1.867 1.690 -0.596
ENSG00000162402 E049 84.1949896 0.0003477840 6.725283e-07 5.794455e-06 1 55129477 55129574 98 - 1.897 1.713 -0.623
ENSG00000162402 E050 96.7690899 0.0004708345 2.258888e-09 3.136007e-08 1 55132545 55132700 156 - 1.965 1.744 -0.747
ENSG00000162402 E051 65.9012664 0.0004480929 7.053740e-10 1.077582e-08 1 55134070 55134163 94 - 1.812 1.510 -1.025
ENSG00000162402 E052 52.4140481 0.0004417558 2.150913e-07 2.049100e-06 1 55134328 55134413 86 - 1.710 1.435 -0.938
ENSG00000162402 E053 67.4987163 0.0085323679 7.941105e-03 2.363171e-02 1 55137515 55137688 174 - 1.791 1.670 -0.411
ENSG00000162402 E054 53.6975730 0.0147239633 2.538433e-02 6.267005e-02 1 55137806 55137904 99 - 1.691 1.573 -0.403
ENSG00000162402 E055 61.1355203 0.0393481604 2.680762e-02 6.559240e-02 1 55138608 55138718 111 - 1.756 1.598 -0.536
ENSG00000162402 E056 41.4207807 0.0085030300 3.524582e-05 2.059089e-04 1 55138944 55139010 67 - 1.613 1.320 -1.008
ENSG00000162402 E057 58.3958954 0.0120199180 8.342061e-04 3.381139e-03 1 55141616 55141731 116 - 1.745 1.545 -0.679
ENSG00000162402 E058 33.3703546 0.0038682212 4.301065e-04 1.890387e-03 1 55142742 55142795 54 - 1.511 1.278 -0.807
ENSG00000162402 E059 54.7827563 0.0084749106 3.121165e-04 1.429044e-03 1 55142979 55143119 141 - 1.721 1.510 -0.718
ENSG00000162402 E060 39.8182673 0.0066776308 8.084152e-03 2.399408e-02 1 55144127 55144203 77 - 1.575 1.425 -0.512
ENSG00000162402 E061 62.4593695 0.0109424212 1.399560e-05 8.989400e-05 1 55145998 55146109 112 - 1.788 1.501 -0.973
ENSG00000162402 E062 73.8170069 0.0080027952 2.868828e-08 3.242205e-07 1 55146929 55147060 132 - 1.866 1.520 -1.174
ENSG00000162402 E063 80.0972356 0.0115364015 9.985266e-06 6.637469e-05 1 55147649 55147798 150 - 1.888 1.622 -0.900
ENSG00000162402 E064 62.7637581 0.0076144157 1.911810e-04 9.261900e-04 1 55148463 55148570 108 - 1.774 1.570 -0.692
ENSG00000162402 E065 3.2569991 0.0047475706 1.418055e-03 5.366914e-03 1 55151912 55151975 64 - 0.666 0.000 -13.268
ENSG00000162402 E066 47.4821706 0.0902310308 8.561905e-02 1.683875e-01 1 55153870 55153917 48 - 1.648 1.493 -0.530
ENSG00000162402 E067 75.1721141 0.0083140521 5.351974e-05 2.993461e-04 1 55154119 55154280 162 - 1.853 1.639 -0.725
ENSG00000162402 E068 64.6390425 0.0123798788 6.020673e-06 4.209316e-05 1 55154371 55154466 96 - 1.804 1.502 -1.024
ENSG00000162402 E069 62.7026914 0.0003750941 5.864200e-11 1.075257e-09 1 55154671 55154778 108 - 1.795 1.455 -1.156
ENSG00000162402 E070 69.7403645 0.0003643940 1.459562e-19 8.879565e-18 1 55156948 55157051 104 - 1.859 1.345 -1.754
ENSG00000162402 E071 63.5281478 0.0005871624 5.523357e-21 3.977132e-19 1 55157256 55157370 115 - 1.826 1.231 -2.044
ENSG00000162402 E072 65.7209770 0.0129714725 1.091986e-10 1.915032e-09 1 55158878 55159036 159 - 1.834 1.332 -1.716
ENSG00000162402 E073 50.5579469 0.0008382985 4.528209e-10 7.149393e-09 1 55159611 55159685 75 - 1.707 1.332 -1.286
ENSG00000162402 E074 41.9588677 0.0040597221 3.968984e-09 5.267705e-08 1 55162199 55162264 66 - 1.634 1.197 -1.510
ENSG00000162402 E075 44.8392805 0.0005092650 5.734331e-09 7.407280e-08 1 55165885 55165950 66 - 1.655 1.292 -1.250
ENSG00000162402 E076 40.4308917 0.0005164552 1.140693e-06 9.357037e-06 1 55166568 55166603 36 - 1.604 1.306 -1.029
ENSG00000162402 E077 58.2644248 0.0004243867 1.013059e-08 1.247212e-07 1 55171556 55171678 123 - 1.759 1.465 -1.002
ENSG00000162402 E078 79.7320647 0.0005277234 4.490350e-14 1.341137e-12 1 55172377 55172520 144 - 1.901 1.543 -1.211
ENSG00000162402 E079 47.0175414 0.0005139451 1.076816e-12 2.626491e-11 1 55176376 55176443 68 - 1.688 1.214 -1.637
ENSG00000162402 E080 64.2737227 0.0017739614 6.884289e-17 3.026707e-15 1 55177967 55178129 163 - 1.825 1.306 -1.777
ENSG00000162402 E081 13.3952285 0.0012715205 1.286801e-06 1.043805e-05 1 55178130 55178132 3 - 1.183 0.552 -2.474
ENSG00000162402 E082 0.9223296 0.0133319058 7.147193e-01 8.108453e-01 1 55214606 55214789 184 - 0.262 0.215 -0.369
ENSG00000162402 E083 62.4117553 0.0050240571 3.438894e-17 1.565325e-15 1 55214790 55217530 2741 - 1.821 1.196 -2.148