ENSG00000160305

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000417564 ENSG00000160305 HEK293_OSMI2_2hA HEK293_TMG_2hB DIP2A protein_coding protein_coding 16.9785 13.83794 16.01249 0.7146897 0.3779611 0.2104279 2.3953326 1.4565268 2.2471348 0.07693242 0.2923071 0.6220891 0.13815000 0.10556667 0.13976667 0.03420000 3.988743e-01 3.905505e-13 FALSE TRUE
ENST00000466639 ENSG00000160305 HEK293_OSMI2_2hA HEK293_TMG_2hB DIP2A protein_coding protein_coding 16.9785 13.83794 16.01249 0.7146897 0.3779611 0.2104279 1.0213475 1.2753302 1.0537415 0.39349741 0.5269153 -0.2729915 0.06135417 0.09166667 0.06673333 -0.02493333 8.060983e-01 3.905505e-13 FALSE TRUE
ENST00000478105 ENSG00000160305 HEK293_OSMI2_2hA HEK293_TMG_2hB DIP2A protein_coding retained_intron 16.9785 13.83794 16.01249 0.7146897 0.3779611 0.2104279 0.9685439 0.2856321 1.1520939 0.11960157 0.1171353 1.9748521 0.05420000 0.02163333 0.07166667 0.05003333 6.014749e-02 3.905505e-13 FALSE TRUE
ENST00000479654 ENSG00000160305 HEK293_OSMI2_2hA HEK293_TMG_2hB DIP2A protein_coding processed_transcript 16.9785 13.83794 16.01249 0.7146897 0.3779611 0.2104279 2.2804354 1.6528855 2.4739812 0.27990779 0.1213751 0.5789654 0.13354167 0.11943333 0.15480000 0.03536667 4.963820e-01 3.905505e-13 FALSE TRUE
ENST00000494435 ENSG00000160305 HEK293_OSMI2_2hA HEK293_TMG_2hB DIP2A protein_coding retained_intron 16.9785 13.83794 16.01249 0.7146897 0.3779611 0.2104279 4.8035915 5.7785207 2.7973621 0.45265011 0.2036426 -1.0439796 0.29345000 0.41683333 0.17430000 -0.24253333 3.905505e-13 3.905505e-13 FALSE TRUE
MSTRG.21511.1 ENSG00000160305 HEK293_OSMI2_2hA HEK293_TMG_2hB DIP2A protein_coding   16.9785 13.83794 16.01249 0.7146897 0.3779611 0.2104279 1.3306787 0.9265134 1.7608545 0.17571748 0.1678287 0.9190742 0.07878333 0.06600000 0.10970000 0.04370000 9.473475e-02 3.905505e-13 TRUE TRUE
MSTRG.21511.6 ENSG00000160305 HEK293_OSMI2_2hA HEK293_TMG_2hB DIP2A protein_coding   16.9785 13.83794 16.01249 0.7146897 0.3779611 0.2104279 0.3954563 0.0000000 0.8242635 0.00000000 0.1191217 6.3824311 0.02367083 0.00000000 0.05183333 0.05183333 3.853435e-10 3.905505e-13 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000160305 E001 0.5964967 0.0227796550 4.281191e-01 5.709287e-01 21 46458891 46458894 4 + 0.273 0.135 -1.265
ENSG00000160305 E002 0.5964967 0.0227796550 4.281191e-01 5.709287e-01 21 46458895 46458898 4 + 0.273 0.135 -1.265
ENSG00000160305 E003 1.3799964 0.0135265734 1.720684e-01 2.908938e-01 21 46458899 46458904 6 + 0.483 0.237 -1.490
ENSG00000160305 E004 7.2991762 0.0119326674 2.912923e-02 7.025344e-02 21 46458905 46458949 45 + 1.038 0.757 -1.071
ENSG00000160305 E005 9.2803842 0.0063537798 1.193732e-01 2.190496e-01 21 46458950 46458957 8 + 1.092 0.917 -0.646
ENSG00000160305 E006 9.4339759 0.0214945844 1.436910e-01 2.530357e-01 21 46458958 46458962 5 + 1.103 0.916 -0.687
ENSG00000160305 E007 11.6408955 0.0149328341 3.703295e-01 5.147724e-01 21 46458963 46458976 14 + 1.150 1.048 -0.368
ENSG00000160305 E008 21.4099740 0.0011861419 1.655145e-01 2.823689e-01 21 46458977 46459056 80 + 1.396 1.291 -0.366
ENSG00000160305 E009 39.5121303 0.0053936724 4.533548e-01 5.940880e-01 21 46459057 46459222 166 + 1.624 1.575 -0.168
ENSG00000160305 E010 38.2462760 0.0019310015 5.515495e-01 6.809966e-01 21 46484757 46484828 72 + 1.609 1.573 -0.123
ENSG00000160305 E011 52.1233168 0.0018217689 8.881310e-01 9.324937e-01 21 46490600 46490719 120 + 1.718 1.725 0.022
ENSG00000160305 E012 60.7169183 0.0009343373 5.930953e-03 1.842664e-02 21 46496988 46497107 120 + 1.726 1.852 0.427
ENSG00000160305 E013 83.5636935 0.0004846269 1.626290e-03 6.045361e-03 21 46498582 46498833 252 + 1.863 1.985 0.410
ENSG00000160305 E014 1.5918646 0.0092675047 1.098628e-01 2.053553e-01 21 46504313 46504360 48 + 0.523 0.237 -1.680
ENSG00000160305 E015 26.5552135 0.0018224190 1.720210e-01 2.908344e-01 21 46504361 46504379 19 + 1.391 1.484 0.319
ENSG00000160305 E016 43.0235062 0.0073936115 7.595797e-01 8.439037e-01 21 46504380 46504489 110 + 1.633 1.650 0.059
ENSG00000160305 E017 60.6168273 0.0024886779 2.250866e-01 3.565293e-01 21 46509257 46509376 120 + 1.758 1.818 0.204
ENSG00000160305 E018 37.0112072 0.0216687024 6.223995e-01 7.392171e-01 21 46511417 46511428 12 + 1.555 1.600 0.154
ENSG00000160305 E019 94.0088680 0.0070890662 5.019479e-01 6.380997e-01 21 46511429 46511614 186 + 1.958 1.994 0.123
ENSG00000160305 E020 70.4679623 0.0017523060 1.158465e-02 3.254847e-02 21 46529092 46529183 92 + 1.796 1.910 0.385
ENSG00000160305 E021 73.9594464 0.0003791312 9.331562e-04 3.730242e-03 21 46532127 46532237 111 + 1.804 1.938 0.453
ENSG00000160305 E022 74.6046880 0.0003495435 6.389902e-04 2.676545e-03 21 46533524 46533647 124 + 1.804 1.942 0.466
ENSG00000160305 E023 67.0097458 0.0004022570 1.261220e-04 6.418478e-04 21 46534004 46534113 110 + 1.742 1.906 0.555
ENSG00000160305 E024 76.9610315 0.0004020074 1.624907e-06 1.288925e-05 21 46534585 46534687 103 + 1.779 1.974 0.655
ENSG00000160305 E025 64.2847018 0.0038330710 9.481313e-04 3.781465e-03 21 46537224 46537288 65 + 1.714 1.887 0.587
ENSG00000160305 E026 66.2805984 0.0043592696 4.399485e-03 1.426318e-02 21 46537446 46537539 94 + 1.740 1.892 0.514
ENSG00000160305 E027 81.1159846 0.0003425965 1.628350e-02 4.335165e-02 21 46538483 46538602 120 + 1.861 1.955 0.314
ENSG00000160305 E028 10.5212328 0.0015802303 3.921027e-02 8.957058e-02 21 46538735 46539876 1142 + 1.150 0.936 -0.780
ENSG00000160305 E029 103.5716395 0.0003666429 1.642153e-04 8.102221e-04 21 46539877 46539991 115 + 1.944 2.075 0.441
ENSG00000160305 E030 126.7637709 0.0002576035 1.586311e-10 2.704967e-09 21 46541756 46541895 140 + 1.993 2.194 0.674
ENSG00000160305 E031 144.4962762 0.0003100514 4.089603e-17 1.842480e-15 21 46545137 46545273 137 + 2.020 2.271 0.841
ENSG00000160305 E032 115.7597142 0.0034923137 2.694124e-08 3.061566e-07 21 46545881 46545961 81 + 1.933 2.173 0.802
ENSG00000160305 E033 56.6158099 0.0006614736 6.498022e-30 1.088445e-27 21 46545962 46546304 343 + 1.381 1.963 1.981
ENSG00000160305 E034 66.2556212 0.0025856434 4.202196e-01 5.634382e-01 21 46546915 46547042 128 + 1.847 1.808 -0.134
ENSG00000160305 E035 10.6322888 0.0104824687 5.602018e-04 2.385574e-03 21 46547043 46547205 163 + 0.834 1.221 1.423
ENSG00000160305 E036 49.6461745 0.0004793828 1.655008e-02 4.394896e-02 21 46549771 46549885 115 + 1.760 1.639 -0.411
ENSG00000160305 E037 5.4990655 0.0384556220 1.542979e-03 5.775107e-03 21 46549886 46550110 225 + 0.483 0.991 2.108
ENSG00000160305 E038 58.4928755 0.0006242088 5.135372e-05 2.885425e-04 21 46550543 46550744 202 + 1.861 1.670 -0.647
ENSG00000160305 E039 41.8359832 0.0126775937 1.070936e-03 4.204274e-03 21 46551634 46551743 110 + 1.742 1.486 -0.874
ENSG00000160305 E040 35.6008921 0.0008503644 5.665041e-04 2.408440e-03 21 46551824 46551904 81 + 1.653 1.446 -0.710
ENSG00000160305 E041 25.0387784 0.0008060476 7.798391e-13 1.949053e-11 21 46552911 46554168 1258 + 1.599 1.049 -1.928
ENSG00000160305 E042 44.4872506 0.0004694517 1.137175e-05 7.460413e-05 21 46554169 46554292 124 + 1.755 1.518 -0.806
ENSG00000160305 E043 32.7483403 0.0008900108 8.938463e-03 2.612411e-02 21 46554575 46554696 122 + 1.593 1.429 -0.563
ENSG00000160305 E044 29.4528809 0.0008101779 2.708784e-03 9.400112e-03 21 46554822 46554933 112 + 1.563 1.365 -0.680
ENSG00000160305 E045 2.1787077 0.0120748609 9.068521e-01 9.448512e-01 21 46555519 46555981 463 + 0.523 0.502 -0.099
ENSG00000160305 E046 33.2770491 0.0153411215 4.194640e-02 9.462964e-02 21 46555982 46556091 110 + 1.606 1.433 -0.593
ENSG00000160305 E047 2.4464415 0.0063073706 6.400470e-03 1.966414e-02 21 46556092 46556402 311 + 0.706 0.237 -2.488
ENSG00000160305 E048 7.8433233 0.0020760136 2.366686e-04 1.119281e-03 21 46556403 46556938 536 + 1.112 0.666 -1.717
ENSG00000160305 E049 32.5405466 0.0008847387 7.291917e-02 1.481960e-01 21 46556939 46557069 131 + 1.570 1.457 -0.386
ENSG00000160305 E050 7.7312743 0.0139601641 6.684788e-07 5.764546e-06 21 46557070 46557584 515 + 1.158 0.450 -2.879
ENSG00000160305 E051 33.9919961 0.0018548862 6.724406e-05 3.668169e-04 21 46557585 46557753 169 + 1.648 1.392 -0.877
ENSG00000160305 E052 35.7860050 0.0009226582 4.053055e-03 1.328947e-02 21 46558223 46558393 171 + 1.636 1.463 -0.593
ENSG00000160305 E053 4.2908775 0.0164523532 1.429390e-01 2.520394e-01 21 46558394 46559106 713 + 0.593 0.811 0.907
ENSG00000160305 E054 0.6266857 0.0181348737 8.264029e-01 8.907641e-01 21 46559834 46559863 30 + 0.199 0.237 0.318
ENSG00000160305 E055 25.4787103 0.0008238995 4.353281e-04 1.910259e-03 21 46560722 46560783 62 + 1.523 1.275 -0.860
ENSG00000160305 E056 11.4991184 0.0015167410 6.238459e-07 5.415154e-06 21 46561285 46561747 463 + 1.287 0.758 -1.959
ENSG00000160305 E057 34.3626033 0.0061234304 2.433896e-06 1.858427e-05 21 46561748 46561805 58 + 1.680 1.338 -1.173
ENSG00000160305 E058 6.1892374 0.0465795094 1.523480e-01 2.648814e-01 21 46562755 46562791 37 + 0.961 0.727 -0.911
ENSG00000160305 E059 12.2115855 0.0578873492 5.809326e-03 1.811143e-02 21 46563660 46563857 198 + 1.279 0.858 -1.538
ENSG00000160305 E060 46.8204637 0.0112332969 4.860788e-06 3.471544e-05 21 46563858 46563932 75 + 1.815 1.474 -1.161
ENSG00000160305 E061 69.2517919 0.0003742348 7.106377e-09 9.003423e-08 21 46565713 46565887 175 + 1.952 1.700 -0.852
ENSG00000160305 E062 59.9939107 0.0063327733 5.732336e-05 3.182341e-04 21 46566560 46566683 124 + 1.889 1.645 -0.823
ENSG00000160305 E063 60.2807767 0.0004603331 8.758712e-06 5.898307e-05 21 46567370 46567542 173 + 1.877 1.670 -0.698
ENSG00000160305 E064 42.7242760 0.0013874364 2.148198e-03 7.684473e-03 21 46567543 46567674 132 + 1.718 1.546 -0.587
ENSG00000160305 E065 68.7965282 0.0005179244 2.006309e-06 1.560237e-05 21 46567675 46568126 452 + 1.935 1.727 -0.701
ENSG00000160305 E066 42.7666135 0.0005204693 2.258087e-05 1.382853e-04 21 46568127 46568305 179 + 1.737 1.504 -0.795
ENSG00000160305 E067 22.6581929 0.0085475027 2.079008e-03 7.468983e-03 21 46568306 46568337 32 + 1.479 1.213 -0.929
ENSG00000160305 E068 217.8384410 0.0098982168 8.790954e-01 9.263500e-01 21 46568338 46570015 1678 + 2.333 2.346 0.044
ENSG00000160305 E069 20.0365601 0.0010244768 3.004102e-02 7.203692e-02 21 46570630 46570757 128 + 1.391 1.221 -0.594
ENSG00000160305 E070 37.3478715 0.0005821980 3.469580e-01 4.911136e-01 21 46570758 46571064 307 + 1.606 1.551 -0.187
ENSG00000160305 E071 5.6852501 0.0028694493 1.736388e-02 4.574263e-02 21 46581681 46581919 239 + 0.948 0.631 -1.265