ENSG00000159842

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000291107 ENSG00000159842 HEK293_OSMI2_2hA HEK293_TMG_2hB ABR protein_coding protein_coding 18.32865 27.6605 15.28948 0.9815581 0.1733897 -0.8548655 2.5067804 1.374674 4.3313886 0.09193344 0.39489865 1.648611 0.16474583 0.0498000 0.28383333 0.23403333 1.349759e-16 1.349759e-16 FALSE TRUE
ENST00000302538 ENSG00000159842 HEK293_OSMI2_2hA HEK293_TMG_2hB ABR protein_coding protein_coding 18.32865 27.6605 15.28948 0.9815581 0.1733897 -0.8548655 11.4148578 16.279872 8.9770355 1.63637468 0.21704974 -0.858058 0.61678750 0.5858000 0.58700000 0.00120000 1.000000e+00 1.349759e-16 FALSE TRUE
ENST00000572585 ENSG00000159842 HEK293_OSMI2_2hA HEK293_TMG_2hB ABR protein_coding retained_intron 18.32865 27.6605 15.28948 0.9815581 0.1733897 -0.8548655 1.1694656 3.994310 0.2052379 1.31930736 0.06183247 -4.217550 0.04997083 0.1482333 0.01336667 -0.13486667 9.232142e-04 1.349759e-16 FALSE TRUE
MSTRG.13343.6 ENSG00000159842 HEK293_OSMI2_2hA HEK293_TMG_2hB ABR protein_coding   18.32865 27.6605 15.28948 0.9815581 0.1733897 -0.8548655 0.7433117 2.183521 0.3082637 0.40677499 0.30826374 -2.784954 0.03418750 0.0781000 0.01976667 -0.05833333 1.446483e-01 1.349759e-16 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000159842 E001 1.2531678 0.2477320595 6.460502e-02 1.343818e-01 17 1003519 1003526 8 - 0.000 0.454 12.323
ENSG00000159842 E002 618.7903753 0.0066269615 4.956657e-10 7.763094e-09 17 1003527 1004440 914 - 2.558 2.828 0.899
ENSG00000159842 E003 215.7302671 0.0011918008 2.972214e-12 6.751522e-11 17 1004441 1004646 206 - 2.127 2.364 0.793
ENSG00000159842 E004 313.6512824 0.0002433396 7.657405e-15 2.564385e-13 17 1004647 1005009 363 - 2.322 2.516 0.647
ENSG00000159842 E005 173.2568828 0.0002536958 7.092695e-06 4.877631e-05 17 1005010 1005148 139 - 2.101 2.250 0.500
ENSG00000159842 E006 354.1435441 0.0008476122 2.294928e-03 8.134548e-03 17 1005149 1005734 586 - 2.455 2.544 0.295
ENSG00000159842 E007 86.8188461 0.0003298663 1.683848e-04 8.282700e-04 17 1005735 1005790 56 - 1.782 1.956 0.587
ENSG00000159842 E008 115.8508942 0.0002757179 5.362361e-02 1.155923e-01 17 1005791 1005907 117 - 1.972 2.056 0.280
ENSG00000159842 E009 122.0805195 0.0027807329 1.412419e-01 2.497396e-01 17 1005908 1006060 153 - 1.999 2.077 0.262
ENSG00000159842 E010 56.7072378 0.0084021876 1.075766e-01 2.019588e-01 17 1006061 1006079 19 - 1.633 1.759 0.425
ENSG00000159842 E011 66.3737934 0.0003812078 2.625344e-01 4.003247e-01 17 1006080 1006117 38 - 1.749 1.816 0.224
ENSG00000159842 E012 48.1093283 0.0028987391 5.671629e-01 6.940272e-01 17 1006118 1006120 3 - 1.629 1.678 0.166
ENSG00000159842 E013 66.5062285 0.0023319242 6.947391e-01 7.954942e-01 17 1006121 1006169 49 - 1.803 1.798 -0.016
ENSG00000159842 E014 78.6574249 0.0023978251 6.339215e-01 7.485150e-01 17 1007165 1007237 73 - 1.875 1.867 -0.026
ENSG00000159842 E015 74.0564895 0.0004887646 2.908134e-01 4.316070e-01 17 1007238 1007268 31 - 1.864 1.833 -0.106
ENSG00000159842 E016 73.9747702 0.0061212051 6.743927e-01 7.798906e-01 17 1007269 1007312 44 - 1.815 1.856 0.138
ENSG00000159842 E017 76.6924170 0.0028597168 9.850732e-01 9.946868e-01 17 1009679 1009708 30 - 1.849 1.865 0.055
ENSG00000159842 E018 64.5080437 0.0062871300 8.266372e-01 8.909138e-01 17 1009709 1009715 7 - 1.766 1.794 0.096
ENSG00000159842 E019 75.8861019 0.0168233746 4.802871e-01 6.185769e-01 17 1009716 1009737 22 - 1.883 1.839 -0.148
ENSG00000159842 E020 97.6387252 0.0020918548 8.959930e-02 1.745148e-01 17 1009738 1009784 47 - 2.000 1.942 -0.193
ENSG00000159842 E021 1.5833544 0.0090840058 4.136381e-01 5.570911e-01 17 1009785 1010213 429 - 0.273 0.431 0.954
ENSG00000159842 E022 2.5024618 0.0060627569 6.838734e-01 7.869680e-01 17 1010425 1010728 304 - 0.559 0.502 -0.269
ENSG00000159842 E023 101.3683642 0.0008794272 1.819277e-01 3.036327e-01 17 1010729 1010784 56 - 2.001 1.964 -0.125
ENSG00000159842 E024 115.3179710 0.0003083739 1.569524e-01 2.710350e-01 17 1010785 1010863 79 - 2.055 2.020 -0.117
ENSG00000159842 E025 1.4488795 0.2413586997 9.842748e-01 9.942728e-01 17 1011145 1011388 244 - 0.365 0.352 -0.080
ENSG00000159842 E026 2.2069196 0.0066141681 7.904602e-01 8.659692e-01 17 1011576 1011661 86 - 0.503 0.468 -0.175
ENSG00000159842 E027 128.8809862 0.0003102986 6.435818e-01 7.560862e-01 17 1011846 1011936 91 - 2.078 2.076 -0.004
ENSG00000159842 E028 100.4069117 0.0003075552 4.349034e-02 9.745242e-02 17 1011937 1011985 49 - 2.011 1.950 -0.203
ENSG00000159842 E029 1.0631342 0.0146648890 2.369539e-01 3.706460e-01 17 1011986 1012261 276 - 0.439 0.237 -1.271
ENSG00000159842 E030 0.9179615 0.0156801763 4.532554e-01 5.939995e-01 17 1012262 1012395 134 - 0.364 0.237 -0.856
ENSG00000159842 E031 0.6256415 0.0175415316 1.058777e-01 1.994215e-01 17 1012396 1012473 78 - 0.364 0.094 -2.438
ENSG00000159842 E032 0.8470867 0.0143948651 2.591910e-01 3.965673e-01 17 1012474 1012557 84 - 0.364 0.172 -1.437
ENSG00000159842 E033 0.0000000       17 1012558 1012589 32 -      
ENSG00000159842 E034 142.2303769 0.0005877698 1.054964e-02 3.009076e-02 17 1012688 1012797 110 - 2.168 2.100 -0.228
ENSG00000159842 E035 0.4460135 0.0271659729 2.427643e-02 6.038412e-02 17 1013044 1013104 61 - 0.364 0.000 -16.166
ENSG00000159842 E036 131.7020013 0.0016368575 1.776819e-01 2.982161e-01 17 1013105 1013164 60 - 2.110 2.075 -0.118
ENSG00000159842 E037 0.0000000       17 1013165 1013194 30 -      
ENSG00000159842 E038 0.0000000       17 1031598 1031838 241 -      
ENSG00000159842 E039 0.1451727 0.0431271528 2.659919e-01   17 1039539 1039597 59 - 0.158 0.000 -14.354
ENSG00000159842 E040 0.9880035 0.1088855458 9.488795e-02 1.827113e-01 17 1049980 1050049 70 - 0.000 0.349 14.389
ENSG00000159842 E041 138.9472849 0.0034420535 3.865029e-01 5.306813e-01 17 1050050 1050093 44 - 2.123 2.103 -0.067
ENSG00000159842 E042 140.1595115 0.0020123889 3.112646e-01 4.537152e-01 17 1050094 1050143 50 - 2.129 2.106 -0.076
ENSG00000159842 E043 128.3035639 0.0057704336 9.930302e-02 1.894280e-01 17 1050144 1050181 38 - 2.119 2.055 -0.215
ENSG00000159842 E044 97.5172488 0.0009051987 1.010481e-04 5.267386e-04 17 1050537 1050553 17 - 2.046 1.910 -0.458
ENSG00000159842 E045 149.9115903 0.0052645016 7.219369e-04 2.977442e-03 17 1050554 1050634 81 - 2.232 2.095 -0.459
ENSG00000159842 E046 11.4779244 0.0018684908 4.679405e-02 1.034566e-01 17 1055283 1056034 752 - 0.903 1.133 0.846
ENSG00000159842 E047 125.1809384 0.0028280704 5.221039e-04 2.242372e-03 17 1056035 1056109 75 - 2.148 2.021 -0.424
ENSG00000159842 E048 133.8061159 0.0017949552 4.992183e-02 1.090348e-01 17 1056998 1057102 105 - 2.133 2.074 -0.195
ENSG00000159842 E049 0.0000000       17 1057844 1057969 126 -      
ENSG00000159842 E050 86.0427088 0.0003442216 3.903092e-01 5.342927e-01 17 1057970 1058045 76 - 1.920 1.900 -0.068
ENSG00000159842 E051 0.2998086 0.0291516166 6.475755e-01   17 1058046 1058047 2 - 0.158 0.094 -0.857
ENSG00000159842 E052 106.3674807 0.0004136843 4.530644e-01 5.938348e-01 17 1058745 1058867 123 - 2.003 1.990 -0.045
ENSG00000159842 E053 0.7782011 0.0159223929 2.584803e-01 3.957483e-01 17 1058942 1058996 55 - 0.364 0.171 -1.440
ENSG00000159842 E054 61.9393858 0.0004238658 5.003226e-03 1.593849e-02 17 1067077 1067116 40 - 1.840 1.725 -0.390
ENSG00000159842 E055 74.5560424 0.0066750527 1.807331e-02 4.728763e-02 17 1067117 1067166 50 - 1.925 1.802 -0.412
ENSG00000159842 E056 83.0603306 0.0032961555 8.597527e-02 1.689496e-01 17 1067167 1067242 76 - 1.934 1.865 -0.231
ENSG00000159842 E057 77.0271645 0.0003596334 9.243812e-01 9.563614e-01 17 1069969 1070037 69 - 1.851 1.861 0.034
ENSG00000159842 E058 73.6742538 0.0003723673 1.550692e-01 2.684976e-01 17 1070038 1070090 53 - 1.872 1.825 -0.158
ENSG00000159842 E059 109.9836634 0.0013277826 1.114720e-03 4.352888e-03 17 1072614 1072732 119 - 2.082 1.972 -0.371
ENSG00000159842 E060 66.7492949 0.0003711657 1.553903e-03 5.810367e-03 17 1072733 1072754 22 - 1.880 1.754 -0.426
ENSG00000159842 E061 78.9847991 0.0008976294 2.231059e-04 1.062432e-03 17 1073625 1073677 53 - 1.958 1.815 -0.481
ENSG00000159842 E062 0.1482932 0.0417984337 8.801977e-01   17 1078805 1078813 9 - 0.000 0.094 12.529
ENSG00000159842 E063 0.2214452 0.0393613122 8.792508e-01   17 1078814 1079329 516 - 0.000 0.094 12.560
ENSG00000159842 E064 76.4523647 0.0066523416 3.991664e-03 1.311974e-02 17 1079330 1079390 61 - 1.949 1.802 -0.494
ENSG00000159842 E065 0.1515154 0.0428340141 2.657443e-01   17 1083269 1083519 251 - 0.158 0.000 -14.359
ENSG00000159842 E066 43.0406818 0.0071327276 1.874265e-02 4.876851e-02 17 1083520 1083521 2 - 1.703 1.559 -0.489
ENSG00000159842 E067 95.3093513 0.0078948515 8.867807e-04 3.567896e-03 17 1083522 1083627 106 - 2.057 1.887 -0.571
ENSG00000159842 E068 0.3729606 0.0304157910 6.504285e-01 7.614694e-01 17 1083628 1083771 144 - 0.158 0.094 -0.851
ENSG00000159842 E069 117.5838969 0.0007747328 3.589503e-06 2.641220e-05 17 1091665 1091791 127 - 2.134 1.985 -0.501
ENSG00000159842 E070 65.0950726 0.0003559612 1.565098e-02 4.195839e-02 17 1091792 1091798 7 - 1.849 1.754 -0.321
ENSG00000159842 E071 87.6557216 0.0003080201 1.494824e-02 4.036977e-02 17 1091799 1091850 52 - 1.968 1.887 -0.273
ENSG00000159842 E072 103.0168000 0.0003161049 2.834740e-03 9.778280e-03 17 1100637 1100735 99 - 2.046 1.952 -0.315
ENSG00000159842 E073 44.6762918 0.0005030779 1.143384e-01 2.118737e-01 17 1108934 1109100 167 - 1.671 1.599 -0.245
ENSG00000159842 E074 0.5911836 0.0368585874 2.320704e-01 3.648976e-01 17 1115276 1115436 161 - 0.000 0.238 14.153
ENSG00000159842 E075 46.1956495 0.0040216340 5.923039e-02 1.253185e-01 17 1125183 1125323 141 - 1.706 1.608 -0.336
ENSG00000159842 E076 26.0967108 0.0119824083 1.913525e-01 3.154327e-01 17 1125324 1125367 44 - 1.468 1.371 -0.337
ENSG00000159842 E077 0.6632174 0.0197214699 6.797923e-01 7.838716e-01 17 1125368 1125755 388 - 0.158 0.237 0.730
ENSG00000159842 E078 0.1482932 0.0417984337 8.801977e-01   17 1126340 1126545 206 - 0.000 0.094 12.529
ENSG00000159842 E079 3.2041723 0.0055402317 1.948011e-01 3.197518e-01 17 1153810 1153812 3 - 0.439 0.665 1.052
ENSG00000159842 E080 16.1830222 0.0011141286 9.103920e-03 2.654303e-02 17 1153813 1154238 426 - 1.008 1.271 0.944
ENSG00000159842 E081 0.1451727 0.0431271528 2.659919e-01   17 1154383 1154447 65 - 0.158 0.000 -14.354
ENSG00000159842 E082 0.0000000       17 1154545 1154743 199 -      
ENSG00000159842 E083 0.0000000       17 1154744 1154808 65 -      
ENSG00000159842 E084 0.0000000       17 1154884 1154952 69 -      
ENSG00000159842 E085 0.0000000       17 1177917 1178059 143 -      
ENSG00000159842 E086 26.0019154 0.0160719722 1.475912e-01 2.584173e-01 17 1179667 1179981 315 - 1.475 1.362 -0.389
ENSG00000159842 E087 2.1401989 0.0066185218 1.684330e-01 2.861394e-01 17 1186800 1187322 523 - 0.609 0.390 -1.076
ENSG00000159842 E088 0.6934063 0.1244404291 1.604275e-01 2.756966e-01 17 1228144 1228298 155 - 0.000 0.294 13.980
ENSG00000159842 E089 1.5092574 0.0115814347 1.535937e-01 2.665519e-01 17 1228793 1229738 946 - 0.158 0.431 1.957