ENSG00000159753

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000602705 ENSG00000159753 HEK293_OSMI2_2hA HEK293_TMG_2hB CARMIL2 protein_coding retained_intron 12.69247 22.1725 13.90184 1.054458 0.4777795 -0.6731092 0.4992477 0.3691202 0.8025445 0.06937003 0.3107265 1.0997916 0.06143750 0.01643333 0.05733333 0.04090000 2.222225e-01 1.17323e-06   FALSE
ENST00000602924 ENSG00000159753 HEK293_OSMI2_2hA HEK293_TMG_2hB CARMIL2 protein_coding protein_coding 12.69247 22.1725 13.90184 1.054458 0.4777795 -0.6731092 7.9146716 13.4991263 9.2532744 0.49396866 0.4145304 -0.5443402 0.60760417 0.60946667 0.66813333 0.05866667 5.835218e-01 1.17323e-06 FALSE TRUE
ENST00000696045 ENSG00000159753 HEK293_OSMI2_2hA HEK293_TMG_2hB CARMIL2 protein_coding processed_transcript 12.69247 22.1725 13.90184 1.054458 0.4777795 -0.6731092 0.3910785 0.0000000 1.0186916 0.00000000 0.5518220 6.6846667 0.02510417 0.00000000 0.07083333 0.07083333 1.363558e-01 1.17323e-06 FALSE FALSE
MSTRG.12836.22 ENSG00000159753 HEK293_OSMI2_2hA HEK293_TMG_2hB CARMIL2 protein_coding   12.69247 22.1725 13.90184 1.054458 0.4777795 -0.6731092 3.0434587 7.2949152 1.8802763 0.40899193 0.2343326 -1.9502704 0.22105417 0.32893333 0.13590000 -0.19303333 1.173230e-06 1.17323e-06 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000159753 E001 0.5149242 0.2487653948 1.000000e+00 1.000000e+00 16 67644988 67645003 16 + 0.164 0.166 0.013
ENSG00000159753 E002 0.8115105 0.0177657405 5.081247e-01 6.435768e-01 16 67645004 67645143 140 + 0.164 0.284 1.006
ENSG00000159753 E003 0.3299976 0.0278761121 4.547176e-01   16 67645144 67645164 21 + 0.000 0.165 13.063
ENSG00000159753 E004 0.3299976 0.0278761121 4.547176e-01   16 67645165 67645202 38 + 0.000 0.165 13.063
ENSG00000159753 E005 0.2998086 0.0297104114 6.192054e-01   16 67645203 67645246 44 + 0.164 0.090 -0.995
ENSG00000159753 E006 0.7029582 0.0166296595 7.151399e-01 8.111570e-01 16 67645247 67645286 40 + 0.164 0.229 0.594
ENSG00000159753 E007 0.8846626 0.0135240080 5.051728e-01 6.410103e-01 16 67645540 67645631 92 + 0.164 0.284 1.009
ENSG00000159753 E008 0.0000000       16 67645632 67645700 69 +      
ENSG00000159753 E009 0.0000000       16 67645701 67645723 23 +      
ENSG00000159753 E010 0.7321030 0.0384811399 7.150584e-01 8.110939e-01 16 67645724 67645777 54 + 0.164 0.229 0.599
ENSG00000159753 E011 1.1749934 0.1184254501 3.919921e-01 5.359304e-01 16 67646018 67646080 63 + 0.164 0.339 1.366
ENSG00000159753 E012 1.2147342 0.0178430059 3.562393e-01 5.006266e-01 16 67646186 67646310 125 + 0.164 0.334 1.338
ENSG00000159753 E013 1.6941709 0.0190781596 4.592237e-01 5.994587e-01 16 67646426 67646517 92 + 0.283 0.419 0.822
ENSG00000159753 E014 1.6241393 0.0088886853 1.204365e-01 2.205926e-01 16 67646714 67646784 71 + 0.164 0.454 2.009
ENSG00000159753 E015 1.5468227 0.0088466914 9.834190e-01 9.936891e-01 16 67646900 67646973 74 + 0.376 0.378 0.009
ENSG00000159753 E016 0.8104533 0.0147197453 7.680275e-01 8.501121e-01 16 67647116 67647191 76 + 0.283 0.228 -0.408
ENSG00000159753 E017 0.0000000       16 67647192 67647206 15 +      
ENSG00000159753 E018 1.5822971 0.0096765512 9.834095e-01 9.936858e-01 16 67647299 67647387 89 + 0.376 0.378 0.010
ENSG00000159753 E019 0.0000000       16 67647447 67647507 61 +      
ENSG00000159753 E020 1.2168251 0.0109495021 6.177538e-01 7.354927e-01 16 67647508 67647602 95 + 0.376 0.284 -0.575
ENSG00000159753 E021 0.0000000       16 67647603 67647612 10 +      
ENSG00000159753 E022 1.4476463 0.1455641320 5.618353e-01 6.895574e-01 16 67647680 67647766 87 + 0.283 0.411 0.780
ENSG00000159753 E023 0.8899626 0.0526829497 1.143425e-01 2.118788e-01 16 67647846 67647868 23 + 0.453 0.164 -2.001
ENSG00000159753 E024 1.3265103 0.0459512889 3.705816e-01 5.149981e-01 16 67647869 67647958 90 + 0.453 0.284 -0.989
ENSG00000159753 E025 1.6210189 0.0091320969 4.560697e-01 5.965357e-01 16 67648052 67648129 78 + 0.283 0.418 0.817
ENSG00000159753 E026 0.5503986 0.0211360008 1.000000e+00 1.000000e+00 16 67648130 67648237 108 + 0.164 0.165 0.011
ENSG00000159753 E027 1.6220656 0.0085752391 2.939755e-01 4.350489e-01 16 67648238 67648314 77 + 0.518 0.333 -0.992
ENSG00000159753 E028 0.2955422 0.0298828485 6.193966e-01   16 67648315 67648397 83 + 0.164 0.090 -0.994
ENSG00000159753 E029 1.1739507 0.0135575856 2.116099e-01 3.403908e-01 16 67648398 67648502 105 + 0.453 0.229 -1.405
ENSG00000159753 E030 0.0000000       16 67648503 67648506 4 +      
ENSG00000159753 E031 0.1817044 0.0399164474 1.000000e+00   16 67648507 67648684 178 + 0.000 0.090 12.052
ENSG00000159753 E032 1.9596259 0.1225399065 2.288129e-01 3.610340e-01 16 67648685 67648754 70 + 0.575 0.341 -1.211
ENSG00000159753 E033 1.1898584 0.0653762986 5.745420e-02 1.222691e-01 16 67648893 67648913 21 + 0.518 0.166 -2.302
ENSG00000159753 E034 1.1898584 0.0653762986 5.745420e-02 1.222691e-01 16 67648914 67648918 5 + 0.518 0.166 -2.302
ENSG00000159753 E035 2.0357992 0.0091716557 8.606324e-02 1.690909e-01 16 67648919 67648972 54 + 0.625 0.334 -1.475
ENSG00000159753 E036 1.2125587 0.0117118038 6.183764e-01 7.360304e-01 16 67648973 67648974 2 + 0.376 0.284 -0.575
ENSG00000159753 E037 0.2214452 0.0374462317 1.000000e+00   16 67648975 67649075 101 + 0.000 0.090 12.064
ENSG00000159753 E038 1.6125878 0.0801823862 5.572872e-01 6.857258e-01 16 67649076 67649091 16 + 0.452 0.337 -0.643
ENSG00000159753 E039 2.3489441 0.0998232584 7.732139e-01 8.536508e-01 16 67649092 67649120 29 + 0.517 0.462 -0.273
ENSG00000159753 E040 3.4905263 0.1249619163 8.887742e-01 9.328599e-01 16 67649121 67649172 52 + 0.574 0.616 0.187
ENSG00000159753 E041 0.5911836 0.0242448989 2.488705e-01 3.846035e-01 16 67649173 67649253 81 + 0.000 0.229 13.633
ENSG00000159753 E042 3.6880261 0.0524741012 4.480303e-01 5.893650e-01 16 67649254 67649311 58 + 0.710 0.581 -0.554
ENSG00000159753 E043 0.4396707 0.0271104076 2.152007e-02 5.468476e-02 16 67649312 67649446 135 + 0.376 0.000 -15.785
ENSG00000159753 E044 2.7344038 0.0054487000 2.589106e-01 3.962407e-01 16 67649447 67649619 173 + 0.669 0.488 -0.823
ENSG00000159753 E045 0.1515154 0.0423513590 2.506280e-01   16 67649620 67649805 186 + 0.164 0.000 -14.189
ENSG00000159753 E046 2.1025359 0.0806544658 4.378152e-02 9.799130e-02 16 67649806 67649924 119 + 0.710 0.330 -1.862
ENSG00000159753 E047 1.0622038 0.0160963894 4.558169e-02 1.012631e-01 16 67649925 67649968 44 + 0.518 0.165 -2.314
ENSG00000159753 E048 0.2944980 0.3447395189 1.250007e-01   16 67649969 67650048 80 + 0.283 0.000 -14.568
ENSG00000159753 E049 1.3837703 0.3383164318 7.820718e-02 1.565838e-01 16 67650049 67650150 102 + 0.622 0.166 -2.780
ENSG00000159753 E050 0.4545463 0.6920352820 1.488659e-01 2.601343e-01 16 67650151 67651186 1036 + 0.378 0.000 -14.939
ENSG00000159753 E051 3.2231270 0.1901647974 2.541607e-01 3.908022e-01 16 67651187 67651315 129 + 0.746 0.498 -1.089
ENSG00000159753 E052 0.2903454 0.2702259654 1.130220e-01   16 67651316 67651400 85 + 0.282 0.000 -14.636
ENSG00000159753 E053 3.3087609 0.0052390367 8.468077e-01 9.048089e-01 16 67651401 67651514 114 + 0.574 0.602 0.125
ENSG00000159753 E054 0.0000000       16 67651515 67651684 170 +      
ENSG00000159753 E055 3.4570541 0.0045564593 7.284859e-01 8.209606e-01 16 67651685 67651845 161 + 0.574 0.627 0.231
ENSG00000159753 E056 0.1482932 0.0413243445 1.000000e+00   16 67651846 67651885 40 + 0.000 0.090 12.043
ENSG00000159753 E057 0.1482932 0.0413243445 1.000000e+00   16 67651886 67651920 35 + 0.000 0.090 12.043
ENSG00000159753 E058 3.4946169 0.0045537431 1.813333e-01 3.029156e-01 16 67651921 67652008 88 + 0.453 0.671 1.009
ENSG00000159753 E059 0.1451727 0.0426133112 2.512357e-01   16 67652009 67652198 190 + 0.164 0.000 -14.187
ENSG00000159753 E060 3.9634429 0.0057995688 3.424550e-02 8.022687e-02 16 67652199 67652339 141 + 0.376 0.732 1.673
ENSG00000159753 E061 2.7884495 0.0057738717 5.405298e-02 1.163499e-01 16 67652472 67652538 67 + 0.283 0.626 1.816
ENSG00000159753 E062 10.3930234 0.0186388784 5.878553e-01 7.111086e-01 16 67652965 67653018 54 + 1.063 0.992 -0.257
ENSG00000159753 E063 36.2278814 0.0038877324 7.955704e-06 5.405775e-05 16 67653019 67653254 236 + 1.712 1.422 -0.989
ENSG00000159753 E064 0.1515154 0.0423513590 2.506280e-01   16 67653429 67653467 39 + 0.164 0.000 -14.189
ENSG00000159753 E065 1.3683405 0.0101656149 3.479106e-01 4.921342e-01 16 67653838 67653870 33 + 0.453 0.284 -0.990
ENSG00000159753 E066 65.8456053 0.0003741186 1.840284e-04 8.951095e-04 16 67654149 67654249 101 + 1.895 1.727 -0.566
ENSG00000159753 E067 177.6611841 0.0001984768 4.644516e-03 1.494352e-02 16 67654332 67654517 186 + 2.263 2.184 -0.264
ENSG00000159753 E068 233.5927413 0.0002500172 6.515818e-01 7.624237e-01 16 67654518 67654692 175 + 2.336 2.322 -0.047
ENSG00000159753 E069 206.5334963 0.0002296014 1.050579e-01 1.981709e-01 16 67654778 67654900 123 + 2.245 2.283 0.127
ENSG00000159753 E070 119.4146785 0.0003553477 2.417764e-01 3.762887e-01 16 67656031 67656067 37 + 2.012 2.049 0.124
ENSG00000159753 E071 4.7994641 0.0033436197 1.086637e-03 4.258236e-03 16 67656194 67656227 34 + 0.988 0.549 -1.780
ENSG00000159753 E072 140.9280573 0.0002478545 2.705948e-01 4.092512e-01 16 67656228 67656299 72 + 2.087 2.118 0.104
ENSG00000159753 E073 212.4849215 0.0002985604 8.025867e-04 3.268717e-03 16 67656424 67656645 222 + 2.228 2.311 0.277
ENSG00000159753 E074 16.3621636 0.0011381799 3.518357e-01 4.960424e-01 16 67656801 67656833 33 + 1.141 1.223 0.288
ENSG00000159753 E075 15.6238327 0.0011696826 6.666379e-01 7.740649e-01 16 67656834 67656839 6 + 1.156 1.191 0.128
ENSG00000159753 E076 21.9275216 0.0012264911 2.534040e-02 6.257283e-02 16 67656840 67656881 42 + 1.183 1.365 0.640
ENSG00000159753 E077 7.4702543 0.0306168762 1.957689e-03 7.093805e-03 16 67656882 67657220 339 + 1.142 0.714 -1.625
ENSG00000159753 E078 2.7625044 0.0058950306 1.080778e-01 2.026808e-01 16 67657221 67657238 18 + 0.710 0.454 -1.162
ENSG00000159753 E079 105.3067274 0.0002762746 1.443618e-02 3.921385e-02 16 67657239 67657316 78 + 1.920 2.007 0.293
ENSG00000159753 E080 81.6061082 0.0004370490 7.071910e-02 1.445365e-01 16 67657406 67657569 164 + 1.824 1.896 0.245