ENSG00000159023

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000490308 ENSG00000159023 HEK293_OSMI2_2hA HEK293_TMG_2hB EPB41 protein_coding retained_intron 45.62901 26.64122 57.73221 2.729022 0.4289943 1.115425 8.3176134 0.6556343 13.1259793 0.6556343 1.3202925 4.3026501 0.15579583 0.02083333 0.2271667 0.20633333 3.568564e-02 5.776552e-63 FALSE TRUE
ENST00000647103 ENSG00000159023 HEK293_OSMI2_2hA HEK293_TMG_2hB EPB41 protein_coding protein_coding 45.62901 26.64122 57.73221 2.729022 0.4289943 1.115425 7.8899309 2.5622763 10.1578031 2.5622763 0.9973788 1.9828905 0.16403750 0.08136667 0.1757333 0.09436667 1.602942e-01 5.776552e-63 FALSE TRUE
MSTRG.706.16 ENSG00000159023 HEK293_OSMI2_2hA HEK293_TMG_2hB EPB41 protein_coding   45.62901 26.64122 57.73221 2.729022 0.4289943 1.115425 1.2631944 3.3079839 0.5138212 1.6280255 0.2599624 -2.6631605 0.04122500 0.13196667 0.0089000 -0.12306667 1.748482e-01 5.776552e-63 FALSE TRUE
MSTRG.706.24 ENSG00000159023 HEK293_OSMI2_2hA HEK293_TMG_2hB EPB41 protein_coding   45.62901 26.64122 57.73221 2.729022 0.4289943 1.115425 10.8678833 8.7284794 11.1306842 0.7360851 0.8042134 0.3503837 0.26279167 0.32893333 0.1930333 -0.13590000 5.278383e-05 5.776552e-63 FALSE TRUE
MSTRG.706.26 ENSG00000159023 HEK293_OSMI2_2hA HEK293_TMG_2hB EPB41 protein_coding   45.62901 26.64122 57.73221 2.729022 0.4289943 1.115425 0.8871524 1.7738617 0.0000000 1.7738617 0.0000000 -7.4788599 0.02580000 0.05633333 0.0000000 -0.05633333 7.145411e-01 5.776552e-63 FALSE TRUE
MSTRG.706.27 ENSG00000159023 HEK293_OSMI2_2hA HEK293_TMG_2hB EPB41 protein_coding   45.62901 26.64122 57.73221 2.729022 0.4289943 1.115425 0.7152355 1.7008385 0.0000000 0.3469543 0.0000000 -7.4185598 0.02427083 0.06270000 0.0000000 -0.06270000 1.475817e-25 5.776552e-63 FALSE TRUE
MSTRG.706.3 ENSG00000159023 HEK293_OSMI2_2hA HEK293_TMG_2hB EPB41 protein_coding   45.62901 26.64122 57.73221 2.729022 0.4289943 1.115425 0.9504930 2.7565131 0.0000000 1.4367683 0.0000000 -8.1119250 0.03424583 0.11300000 0.0000000 -0.11300000 1.133828e-01 5.776552e-63 FALSE TRUE
MSTRG.706.40 ENSG00000159023 HEK293_OSMI2_2hA HEK293_TMG_2hB EPB41 protein_coding   45.62901 26.64122 57.73221 2.729022 0.4289943 1.115425 5.5122253 0.0000000 11.2860848 0.0000000 0.4307653 10.1416071 0.09231250 0.00000000 0.1954000 0.19540000 5.776552e-63 5.776552e-63 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000159023 E001 0.0000000       1 28886996 28887026 31 +      
ENSG00000159023 E002 0.0000000       1 28887027 28887072 46 +      
ENSG00000159023 E003 0.3030308 0.3908168631 4.605369e-01   1 28887073 28887090 18 + 0.169 0.000 -11.590
ENSG00000159023 E004 0.3030308 0.3908168631 4.605369e-01   1 28887091 28887091 1 + 0.169 0.000 -13.060
ENSG00000159023 E005 1.2014125 0.4449515603 6.211957e-01 7.381982e-01 1 28887092 28887097 6 + 0.387 0.269 -0.743
ENSG00000159023 E006 1.3529279 0.5191185250 5.895277e-01 7.125856e-01 1 28887098 28887099 2 + 0.428 0.268 -0.975
ENSG00000159023 E007 1.3529279 0.5191185250 5.895277e-01 7.125856e-01 1 28887100 28887102 3 + 0.428 0.268 -0.975
ENSG00000159023 E008 1.6496160 0.3213288671 3.398107e-01 4.837328e-01 1 28887103 28887108 6 + 0.498 0.271 -1.313
ENSG00000159023 E009 3.5974023 0.0239037419 1.625399e-01 2.784528e-01 1 28887109 28887111 3 + 0.722 0.564 -0.682
ENSG00000159023 E010 6.1835921 0.0037109476 2.458282e-03 8.638573e-03 1 28887112 28887116 5 + 0.957 0.615 -1.368
ENSG00000159023 E011 7.9645375 0.0197778235 6.075981e-04 2.560890e-03 1 28887117 28887118 2 + 1.067 0.658 -1.587
ENSG00000159023 E012 11.3065868 0.0090182913 6.106109e-03 1.888781e-02 1 28887119 28887123 5 + 1.162 0.933 -0.836
ENSG00000159023 E013 27.7206130 0.0011387692 6.188950e-06 4.315907e-05 1 28887124 28887171 48 + 1.528 1.286 -0.838
ENSG00000159023 E014 37.4812881 0.0006492771 9.485827e-06 6.339288e-05 1 28887172 28887210 39 + 1.638 1.451 -0.640
ENSG00000159023 E015 0.1472490 0.0436790149 7.343216e-01   1 28893371 28893740 370 + 0.092 0.000 -12.899
ENSG00000159023 E016 0.1472490 0.0436790149 7.343216e-01   1 28893741 28893837 97 + 0.092 0.000 -12.899
ENSG00000159023 E017 0.1515154 0.0433252420 7.342204e-01   1 28914528 28914543 16 + 0.092 0.000 -12.904
ENSG00000159023 E018 0.8962933 0.1244931461 4.492683e-02 1.000665e-01 1 28914544 28914550 7 + 0.385 0.000 -15.034
ENSG00000159023 E019 1.3381542 0.0096383486 5.536896e-03 1.738339e-02 1 28914551 28914561 11 + 0.496 0.000 -16.678
ENSG00000159023 E020 1.4896696 0.0108270733 3.298381e-03 1.114483e-02 1 28914562 28914566 5 + 0.528 0.000 -16.783
ENSG00000159023 E021 1.4896696 0.0108270733 3.298381e-03 1.114483e-02 1 28914567 28914568 2 + 0.528 0.000 -16.783
ENSG00000159023 E022 1.4896696 0.0108270733 3.298381e-03 1.114483e-02 1 28914569 28914571 3 + 0.528 0.000 -16.783
ENSG00000159023 E023 1.7884340 0.0200675743 1.337953e-03 5.103104e-03 1 28914572 28914573 2 + 0.585 0.000 -16.790
ENSG00000159023 E024 3.9005229 0.0157924364 4.415617e-04 1.934118e-03 1 28914574 28914578 5 + 0.826 0.277 -2.674
ENSG00000159023 E025 17.3487849 0.0015240005 1.196135e-06 9.769952e-06 1 28914579 28914600 22 + 1.363 0.997 -1.304
ENSG00000159023 E026 21.6989893 0.0031411100 3.920423e-06 2.856586e-05 1 28914601 28914625 25 + 1.440 1.131 -1.086
ENSG00000159023 E027 70.0036035 0.0042736529 4.925703e-08 5.317755e-07 1 28914626 28914768 143 + 1.913 1.697 -0.731
ENSG00000159023 E028 0.2955422 0.0295780579 7.521649e-01   1 28914769 28914773 5 + 0.092 0.160 0.911
ENSG00000159023 E029 50.1154894 0.0004630032 8.040276e-09 1.008631e-07 1 28987431 28987447 17 + 1.773 1.549 -0.763
ENSG00000159023 E030 134.7366504 0.0003782492 9.573134e-19 5.304480e-17 1 28987448 28987497 50 + 2.192 1.979 -0.714
ENSG00000159023 E031 127.5703817 0.0039383864 4.148867e-09 5.484165e-08 1 28987498 28987510 13 + 2.160 1.975 -0.619
ENSG00000159023 E032 232.3814912 0.0027158191 4.521744e-13 1.173467e-11 1 28987511 28987610 100 + 2.416 2.245 -0.573
ENSG00000159023 E033 415.3432524 0.0016016618 3.140899e-18 1.626664e-16 1 28987611 28987905 295 + 2.661 2.516 -0.482
ENSG00000159023 E034 1.4621191 0.0620374028 7.501537e-01 8.369157e-01 1 28988763 28988829 67 + 0.384 0.371 -0.077
ENSG00000159023 E035 0.3289534 0.0290808819 7.509936e-01   1 28989356 28989435 80 + 0.092 0.160 0.914
ENSG00000159023 E036 272.7474957 0.0038896233 9.038315e-06 6.070629e-05 1 28993330 28993542 213 + 2.457 2.377 -0.268
ENSG00000159023 E037 187.5024836 0.0078844708 4.311748e-03 1.401760e-02 1 28997215 28997319 105 + 2.286 2.228 -0.196
ENSG00000159023 E038 112.7791398 0.0012280507 6.485745e-02 1.348062e-01 1 29011865 29011907 43 + 2.040 2.055 0.052
ENSG00000159023 E039 144.1074992 0.0006748999 1.327344e-02 3.655547e-02 1 29015692 29015767 76 + 2.149 2.154 0.017
ENSG00000159023 E040 207.6575874 0.0021938008 8.023903e-04 3.267988e-03 1 29018224 29018358 135 + 2.320 2.292 -0.092
ENSG00000159023 E041 196.1728124 0.0034074456 5.911733e-04 2.501418e-03 1 29018359 29018442 84 + 2.302 2.255 -0.158
ENSG00000159023 E042 187.8498701 0.0026017577 4.428733e-04 1.939325e-03 1 29030400 29030487 88 + 2.281 2.238 -0.143
ENSG00000159023 E043 0.4545463 0.6993806373 4.481750e-01 5.894900e-01 1 29031788 29031913 126 + 0.235 0.000 -13.465
ENSG00000159023 E044 252.5340330 0.0002510337 2.034890e-09 2.843787e-08 1 29033093 29033245 153 + 2.415 2.357 -0.193
ENSG00000159023 E045 0.5202097 0.0201371035 8.498333e-01 9.068134e-01 1 29035006 29035283 278 + 0.169 0.161 -0.085
ENSG00000159023 E046 216.8197956 0.0002134595 7.378664e-05 3.982864e-04 1 29035826 29035923 98 + 2.333 2.319 -0.049
ENSG00000159023 E047 259.3777921 0.0014098705 2.402722e-04 1.134370e-03 1 29039254 29039417 164 + 2.413 2.392 -0.073
ENSG00000159023 E048 110.3038520 0.0055154978 4.482924e-01 5.895899e-01 1 29039418 29039426 9 + 2.016 2.062 0.154
ENSG00000159023 E049 83.5648603 0.0063400575 2.025524e-01 3.294041e-01 1 29053104 29053106 3 + 1.910 1.922 0.041
ENSG00000159023 E050 164.0895704 0.0030926360 1.257684e-02 3.491515e-02 1 29053107 29053163 57 + 2.211 2.198 -0.044
ENSG00000159023 E051 265.5998980 0.0001743849 3.247252e-07 2.982906e-06 1 29053164 29053312 149 + 2.428 2.397 -0.104
ENSG00000159023 E052 3.8866769 0.0217088715 1.865454e-02 4.857262e-02 1 29053313 29054514 1202 + 0.777 0.446 -1.477
ENSG00000159023 E053 26.2296021 0.0008358881 3.604445e-01 5.047502e-01 1 29058589 29058603 15 + 1.417 1.437 0.068
ENSG00000159023 E054 32.9999706 0.0006560936 1.738238e-01 2.931596e-01 1 29058604 29058645 42 + 1.522 1.521 -0.004
ENSG00000159023 E055 8.8034432 0.0026708224 9.679207e-03 2.797273e-02 1 29058811 29058852 42 + 1.058 0.833 -0.846
ENSG00000159023 E056 166.2204458 0.0002187580 5.035736e-03 1.602885e-02 1 29060422 29060484 63 + 2.211 2.216 0.017
ENSG00000159023 E057 1.7984489 0.0146082339 9.623131e-02 1.847198e-01 1 29064957 29064981 25 + 0.528 0.277 -1.409
ENSG00000159023 E058 365.1172517 0.0001689756 9.014791e-05 4.757041e-04 1 29064982 29065158 177 + 2.550 2.559 0.030
ENSG00000159023 E059 0.0000000       1 29065159 29065683 525 +      
ENSG00000159023 E060 0.2924217 0.0271261860 3.513687e-01   1 29065684 29065825 142 + 0.169 0.000 -14.110
ENSG00000159023 E061 0.1472490 0.0436790149 7.343216e-01   1 29065826 29065950 125 + 0.092 0.000 -12.899
ENSG00000159023 E062 3.5229119 0.0446069747 5.720456e-01 6.982183e-01 1 29068733 29068768 36 + 0.658 0.617 -0.177
ENSG00000159023 E063 1.3609537 0.0110524493 9.236104e-01 9.558615e-01 1 29068769 29068783 15 + 0.340 0.370 0.179
ENSG00000159023 E064 0.1451727 0.0431055212 7.348639e-01   1 29069166 29070363 1198 + 0.092 0.000 -12.905
ENSG00000159023 E065 0.1451727 0.0431055212 7.348639e-01   1 29070364 29070385 22 + 0.092 0.000 -12.905
ENSG00000159023 E066 0.1451727 0.0431055212 7.348639e-01   1 29070386 29070390 5 + 0.092 0.000 -12.905
ENSG00000159023 E067 1.3630445 0.0095679667 2.811887e-01 4.210746e-01 1 29070391 29073093 2703 + 0.425 0.277 -0.895
ENSG00000159023 E068 0.1451727 0.0431055212 7.348639e-01   1 29079441 29081664 2224 + 0.092 0.000 -12.905
ENSG00000159023 E069 0.0000000       1 29082466 29082757 292 +      
ENSG00000159023 E070 0.0000000       1 29083897 29083994 98 +      
ENSG00000159023 E071 0.2965864 0.1940595977 1.411466e-01   1 29083995 29084122 128 + 0.000 0.273 13.515
ENSG00000159023 E072 4.6823023 0.0033730516 3.347106e-01 4.784462e-01 1 29096155 29096231 77 + 0.659 0.860 0.813
ENSG00000159023 E073 13.7506923 0.0013335257 1.195915e-03 4.626650e-03 1 29096232 29096604 373 + 0.979 1.351 1.328
ENSG00000159023 E074 1.7682705 0.0080446573 8.444867e-01 9.031960e-01 1 29096605 29097586 982 + 0.425 0.445 0.106
ENSG00000159023 E075 0.8481309 0.0143720209 3.552736e-01 4.996299e-01 1 29097587 29097806 220 + 0.169 0.369 1.499
ENSG00000159023 E076 346.1527961 0.0002537082 2.766269e-07 2.578367e-06 1 29097807 29097935 129 + 2.538 2.518 -0.067
ENSG00000159023 E077 318.0374784 0.0008229356 2.974070e-06 2.227343e-05 1 29109336 29109437 102 + 2.504 2.475 -0.097
ENSG00000159023 E078 0.1472490 0.0436790149 7.343216e-01   1 29109438 29109738 301 + 0.092 0.000 -12.899
ENSG00000159023 E079 279.5178921 0.0002036785 9.097983e-04 3.648186e-03 1 29112368 29112448 81 + 2.435 2.446 0.039
ENSG00000159023 E080 13.9937357 0.0131959519 1.590134e-01 2.738029e-01 1 29112449 29114611 2163 + 1.190 1.117 -0.261
ENSG00000159023 E081 295.0541023 0.0007295741 1.068664e-01 2.009221e-01 1 29115699 29115803 105 + 2.444 2.491 0.156
ENSG00000159023 E082 473.9872258 0.0003363728 9.321491e-01 9.612640e-01 1 29116819 29117146 328 + 2.632 2.719 0.290
ENSG00000159023 E083 1004.4099312 0.0001583740 1.369496e-06 1.104264e-05 1 29117147 29117866 720 + 2.932 3.075 0.478
ENSG00000159023 E084 2577.7593853 0.0088285977 4.043161e-14 1.215431e-12 1 29117867 29121223 3357 + 3.231 3.578 1.154