ENSG00000156931

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000436792 ENSG00000156931 HEK293_OSMI2_2hA HEK293_TMG_2hB VPS8 protein_coding protein_coding 6.297394 3.076208 9.307367 0.2487154 0.9234792 1.594087 2.7901877 0.35687278 4.6535126 0.17891210 0.11423951 3.6680652 0.3534500 0.12606667 0.51130000 0.38523333 1.639812e-01 8.863966e-11 FALSE TRUE
ENST00000469479 ENSG00000156931 HEK293_OSMI2_2hA HEK293_TMG_2hB VPS8 protein_coding retained_intron 6.297394 3.076208 9.307367 0.2487154 0.9234792 1.594087 0.3273290 0.05598996 0.7312633 0.05598996 0.22114400 3.4896676 0.0416250 0.01936667 0.07563333 0.05626667 1.887226e-01 8.863966e-11 FALSE TRUE
ENST00000469713 ENSG00000156931 HEK293_OSMI2_2hA HEK293_TMG_2hB VPS8 protein_coding retained_intron 6.297394 3.076208 9.307367 0.2487154 0.9234792 1.594087 0.5038001 0.12599432 0.7245651 0.05495241 0.13273763 2.4333440 0.0681000 0.04360000 0.08050000 0.03690000 4.964795e-01 8.863966e-11 FALSE FALSE
ENST00000485024 ENSG00000156931 HEK293_OSMI2_2hA HEK293_TMG_2hB VPS8 protein_coding processed_transcript 6.297394 3.076208 9.307367 0.2487154 0.9234792 1.594087 0.7626819 0.91263510 1.2465917 0.12108653 0.41782744 0.4456839 0.1549042 0.29486667 0.12893333 -0.16593333 5.238642e-02 8.863966e-11   FALSE
ENST00000492449 ENSG00000156931 HEK293_OSMI2_2hA HEK293_TMG_2hB VPS8 protein_coding retained_intron 6.297394 3.076208 9.307367 0.2487154 0.9234792 1.594087 0.6723613 1.11671710 0.1175179 0.18409395 0.05878089 -3.1433533 0.1776583 0.35850000 0.01233333 -0.34616667 8.863966e-11 8.863966e-11 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000156931 E001 1.1124400 0.0117118220 6.137210e-01 7.323666e-01 3 184812143 184812165 23 + 0.260 0.361 0.660
ENSG00000156931 E002 1.2607332 0.0100420567 2.744385e-01 4.135915e-01 3 184812166 184812170 5 + 0.260 0.468 1.244
ENSG00000156931 E003 2.1486074 0.0068884254 9.316552e-01 9.609486e-01 3 184812171 184812182 12 + 0.447 0.468 0.107
ENSG00000156931 E004 5.1025862 0.0031481912 7.444390e-01 8.327845e-01 3 184812183 184812194 12 + 0.734 0.689 -0.188
ENSG00000156931 E005 5.1025862 0.0031481912 7.444390e-01 8.327845e-01 3 184812195 184812195 1 + 0.734 0.689 -0.188
ENSG00000156931 E006 9.8018073 0.0017950496 7.312850e-01 8.229807e-01 3 184812196 184812225 30 + 0.978 0.942 -0.134
ENSG00000156931 E007 0.1451727 0.0434206055 1.000000e+00   3 184812439 184812508 70 + 0.066 0.000 -10.109
ENSG00000156931 E008 0.1451727 0.0434206055 1.000000e+00   3 184812509 184812515 7 + 0.066 0.000 -10.109
ENSG00000156931 E009 0.2924217 0.0272537155 1.000000e+00   3 184812516 184812789 274 + 0.123 0.000 -11.059
ENSG00000156931 E010 0.5932745 0.0237943954 1.968414e-01 3.222938e-01 3 184813745 184813867 123 + 0.123 0.360 1.978
ENSG00000156931 E011 9.8926274 0.0350606343 1.283728e-04 6.517618e-04 3 184815784 184816230 447 + 0.794 1.306 1.879
ENSG00000156931 E012 0.6633060 0.0243419384 8.185801e-01 8.853429e-01 3 184817206 184817244 39 + 0.174 0.217 0.399
ENSG00000156931 E013 1.4737593 0.0119090273 1.103186e-01 2.060163e-01 3 184817306 184817444 139 + 0.260 0.555 1.660
ENSG00000156931 E014 0.2955422 0.0289930073 3.226314e-01   3 184824147 184824232 86 + 0.066 0.216 1.979
ENSG00000156931 E015 13.0631640 0.0013153028 1.522434e-03 5.709490e-03 3 184824545 184824632 88 + 1.149 0.742 -1.533
ENSG00000156931 E016 21.4466868 0.0008326427 1.976067e-06 1.538993e-05 3 184824633 184824785 153 + 1.361 0.834 -1.915
ENSG00000156931 E017 0.0000000       3 184824931 184825048 118 +      
ENSG00000156931 E018 16.3697095 0.0056610050 2.110562e-05 1.301688e-04 3 184826163 184826231 69 + 1.252 0.689 -2.120
ENSG00000156931 E019 8.8099815 0.0024550711 7.972174e-04 3.249504e-03 3 184832689 184832695 7 + 1.007 0.468 -2.241
ENSG00000156931 E020 15.9024803 0.0013011232 5.674745e-08 6.042737e-07 3 184832696 184832756 61 + 1.256 0.468 -3.134
ENSG00000156931 E021 16.6594606 0.0012695523 1.149846e-04 5.908348e-04 3 184832757 184832819 63 + 1.252 0.791 -1.705
ENSG00000156931 E022 10.7280021 0.0017431465 4.103954e-02 9.295573e-02 3 184834649 184834674 26 + 1.054 0.791 -0.996
ENSG00000156931 E023 12.6542299 0.0013712815 2.903691e-01 4.311635e-01 3 184834675 184834742 68 + 1.090 0.974 -0.426
ENSG00000156931 E024 0.0000000       3 184834743 184834951 209 +      
ENSG00000156931 E025 0.1451727 0.0434206055 1.000000e+00   3 184836247 184836330 84 + 0.066 0.000 -10.109
ENSG00000156931 E026 8.8575430 0.0019107975 3.726631e-01 5.170925e-01 3 184838714 184838746 33 + 0.947 0.834 -0.433
ENSG00000156931 E027 7.8481308 0.0036167069 3.536660e-01 4.979263e-01 3 184838747 184839697 951 + 0.914 0.790 -0.478
ENSG00000156931 E028 10.0339284 0.0462058043 1.824241e-01 3.042628e-01 3 184839698 184839752 55 + 1.021 0.792 -0.871
ENSG00000156931 E029 0.4482035 0.0281673958 5.975606e-01 7.192938e-01 3 184839753 184839758 6 + 0.174 0.000 -11.610
ENSG00000156931 E030 1.3349439 0.2325165574 5.514448e-01 6.809029e-01 3 184839759 184840537 779 + 0.297 0.459 0.932
ENSG00000156931 E031 0.1451727 0.0434206055 1.000000e+00   3 184843240 184843245 6 + 0.066 0.000 -10.109
ENSG00000156931 E032 0.1451727 0.0434206055 1.000000e+00   3 184849029 184849070 42 + 0.066 0.000 -10.109
ENSG00000156931 E033 19.6971264 0.0074763384 1.126888e-03 4.393973e-03 3 184849071 184849195 125 + 1.312 0.942 -1.329
ENSG00000156931 E034 3.2014497 0.0202282698 1.968689e-01 3.223222e-01 3 184849196 184849347 152 + 0.614 0.361 -1.263
ENSG00000156931 E035 5.7516110 0.0176542814 3.092512e-01 4.515214e-01 3 184849453 184849935 483 + 0.795 0.628 -0.693
ENSG00000156931 E036 18.4508247 0.0010386596 3.438346e-03 1.154814e-02 3 184849936 184850022 87 + 1.279 0.973 -1.100
ENSG00000156931 E037 14.5929226 0.0012266765 3.672685e-02 8.494834e-02 3 184852500 184852567 68 + 1.174 0.942 -0.843
ENSG00000156931 E038 23.6069299 0.0014009746 3.081329e-03 1.050525e-02 3 184853857 184854010 154 + 1.376 1.102 -0.968
ENSG00000156931 E039 13.0871255 0.0023298886 1.399598e-03 5.305432e-03 3 184854114 184854173 60 + 1.154 0.742 -1.552
ENSG00000156931 E040 15.2786971 0.0011419393 1.341573e-04 6.773905e-04 3 184855711 184855776 66 + 1.219 0.742 -1.781
ENSG00000156931 E041 13.6073217 0.0012512793 9.557781e-04 3.807576e-03 3 184855777 184855818 42 + 1.164 0.743 -1.586
ENSG00000156931 E042 19.3992983 0.0134166739 1.278891e-01 2.312271e-01 3 184859985 184860065 81 + 1.272 1.103 -0.599
ENSG00000156931 E043 33.3839361 0.0157929666 3.050933e-02 7.296651e-02 3 184862897 184863067 171 + 1.507 1.296 -0.733
ENSG00000156931 E044 21.9039316 0.0023363332 1.411796e-02 3.849461e-02 3 184866876 184866950 75 + 1.335 1.102 -0.826
ENSG00000156931 E045 18.8571689 0.0009583653 1.440312e-02 3.913919e-02 3 184868024 184868059 36 + 1.275 1.029 -0.880
ENSG00000156931 E046 0.0000000       3 184868060 184868310 251 +      
ENSG00000156931 E047 18.0523702 0.0009963883 6.553376e-01 7.652410e-01 3 184868946 184868988 43 + 1.219 1.183 -0.129
ENSG00000156931 E048 17.0382126 0.0012218630 5.512485e-01 6.807448e-01 3 184868989 184869036 48 + 1.197 1.144 -0.188
ENSG00000156931 E049 15.8828982 0.0011627630 3.101181e-01 4.524907e-01 3 184869482 184869522 41 + 1.178 1.079 -0.357
ENSG00000156931 E050 9.7412541 0.0017425388 1.710647e-02 4.517696e-02 3 184869523 184869528 6 + 1.021 0.689 -1.291
ENSG00000156931 E051 15.3635209 0.0083878520 4.584444e-01 5.987612e-01 3 184870716 184870805 90 + 1.159 1.080 -0.286
ENSG00000156931 E052 0.4375944 0.0263194268 5.977360e-01 7.194680e-01 3 184882349 184882433 85 + 0.174 0.000 -11.608
ENSG00000156931 E053 0.9265960 0.0542069971 8.420896e-01 9.015515e-01 3 184885969 184886109 141 + 0.260 0.217 -0.340
ENSG00000156931 E054 10.5682424 0.0623041505 8.301430e-01 8.933911e-01 3 184886110 184886156 47 + 0.987 1.009 0.079
ENSG00000156931 E055 2.7378441 0.0226464295 6.973167e-01 7.974658e-01 3 184893234 184893412 179 + 0.539 0.468 -0.342
ENSG00000156931 E056 26.4845941 0.0038787910 2.629291e-01 4.007589e-01 3 184894703 184894925 223 + 1.388 1.296 -0.320
ENSG00000156931 E057 18.8526088 0.0009934307 4.724140e-01 6.114674e-01 3 184898565 184898654 90 + 1.244 1.183 -0.217
ENSG00000156931 E058 14.4059381 0.0012356119 6.201774e-01 7.374496e-01 3 184900921 184900972 52 + 1.107 1.164 0.204
ENSG00000156931 E059 0.0000000       3 184900973 184901363 391 +      
ENSG00000156931 E060 14.0896713 0.0012953342 8.720502e-01 9.217151e-01 3 184913519 184913561 43 + 1.112 1.102 -0.038
ENSG00000156931 E061 15.9294673 0.0011540658 3.239018e-01 4.672404e-01 3 184914981 184915053 73 + 1.134 1.235 0.359
ENSG00000156931 E062 11.2453336 0.0560594014 3.138648e-01 4.565019e-01 3 184915355 184915382 28 + 0.985 1.125 0.512
ENSG00000156931 E063 16.8432521 0.0077282912 6.545844e-01 7.647374e-01 3 184915383 184915474 92 + 1.169 1.219 0.178
ENSG00000156931 E064 0.0000000       3 184919056 184919115 60 +      
ENSG00000156931 E065 16.5751852 0.0010536079 8.339356e-01 8.960017e-01 3 184920127 184920198 72 + 1.174 1.201 0.096
ENSG00000156931 E066 0.9536514 0.2302358190 9.381213e-01 9.651164e-01 3 184922429 184922483 55 + 0.259 0.219 -0.314
ENSG00000156931 E067 25.8590681 0.0007364152 3.418373e-01 4.857854e-01 3 184924862 184924981 120 + 1.338 1.419 0.278
ENSG00000156931 E068 18.9905810 0.0013252259 3.716583e-01 5.161310e-01 3 184926594 184926650 57 + 1.244 1.164 -0.283
ENSG00000156931 E069 20.6052863 0.0009244108 7.956835e-01 8.695493e-01 3 184928451 184928533 83 + 1.268 1.251 -0.059
ENSG00000156931 E070 15.1411046 0.0013507756 7.145247e-01 8.106947e-01 3 184929580 184929664 85 + 1.139 1.182 0.154
ENSG00000156931 E071 18.9277740 0.0009656388 7.256043e-01 8.188367e-01 3 184930470 184930568 99 + 1.227 1.266 0.136
ENSG00000156931 E072 18.4911983 0.0016005338 9.228047e-01 9.553198e-01 3 184936246 184936335 90 + 1.219 1.235 0.055
ENSG00000156931 E073 16.7992385 0.0193622703 7.445756e-01 8.328616e-01 3 184940197 184940243 47 + 1.174 1.217 0.151
ENSG00000156931 E074 27.8989750 0.0007201513 2.838357e-01 4.240246e-01 3 184957374 184957521 148 + 1.373 1.459 0.299
ENSG00000156931 E075 20.4360653 0.0008926833 8.697802e-01 9.202695e-01 3 184964468 184964557 90 + 1.260 1.281 0.074
ENSG00000156931 E076 16.0823831 0.0021509833 9.458627e-01 9.700064e-01 3 184966671 184966713 43 + 1.164 1.164 -0.001
ENSG00000156931 E077 18.9816187 0.0083544227 8.218769e-01 8.876852e-01 3 184971649 184971752 104 + 1.236 1.218 -0.062
ENSG00000156931 E078 1.8998142 0.4802965847 5.606707e-01 6.886322e-01 3 184982418 184982565 148 + 0.391 0.477 0.454
ENSG00000156931 E079 21.2256647 0.0258258667 8.047457e-01 8.757649e-01 3 184982566 184982647 82 + 1.285 1.252 -0.117
ENSG00000156931 E080 24.6926521 0.0018828100 5.046084e-01 6.405172e-01 3 184983012 184983094 83 + 1.325 1.385 0.210
ENSG00000156931 E081 22.3460693 0.0008509010 1.905555e-01 3.144531e-01 3 184993983 184994063 81 + 1.272 1.385 0.396
ENSG00000156931 E082 35.0516198 0.0007090987 3.408783e-05 1.999825e-04 3 184996332 184996501 170 + 1.416 1.683 0.913
ENSG00000156931 E083 38.1656632 0.0041359841 1.906941e-06 1.490118e-05 3 184999696 184999861 166 + 1.432 1.751 1.088
ENSG00000156931 E084 22.9804369 0.0008559938 6.947846e-05 3.774839e-04 3 185024336 185024389 54 + 1.223 1.531 1.068
ENSG00000156931 E085 27.4038214 0.0007554341 5.903172e-05 3.266842e-04 3 185048479 185048559 81 + 1.304 1.593 0.993
ENSG00000156931 E086 86.8430947 0.0027043478 1.968176e-24 2.037514e-22 3 185051876 185052614 739 + 1.722 2.175 1.522