ENSG00000153827

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000283943 ENSG00000153827 HEK293_OSMI2_2hA HEK293_TMG_2hB TRIP12 protein_coding protein_coding 34.30964 21.70554 43.65999 3.30799 1.393346 1.007915 3.330511 2.53398037 5.1776152 0.2428354 0.91499485 1.027984 0.09850417 0.11930000 0.11880000 -0.00050000 9.958216e-01 6.207195e-19 FALSE TRUE
ENST00000418123 ENSG00000153827 HEK293_OSMI2_2hA HEK293_TMG_2hB TRIP12 protein_coding protein_coding 34.30964 21.70554 43.65999 3.30799 1.393346 1.007915 4.413012 6.54305539 0.6469117 1.4542264 0.64691170 -3.318396 0.16284583 0.29903333 0.01406667 -0.28496667 1.326809e-02 6.207195e-19 FALSE FALSE
ENST00000470302 ENSG00000153827 HEK293_OSMI2_2hA HEK293_TMG_2hB TRIP12 protein_coding retained_intron 34.30964 21.70554 43.65999 3.30799 1.393346 1.007915 1.424207 0.00000000 4.8779363 0.0000000 1.62678393 8.933082 0.03089583 0.00000000 0.11016667 0.11016667 2.234677e-08 6.207195e-19 FALSE FALSE
ENST00000675453 ENSG00000153827 HEK293_OSMI2_2hA HEK293_TMG_2hB TRIP12 protein_coding protein_coding 34.30964 21.70554 43.65999 3.30799 1.393346 1.007915 2.236107 0.90174036 3.5567418 0.4969544 0.37582836 1.967912 0.06480417 0.04413333 0.08110000 0.03696667 6.579036e-01 6.207195e-19 FALSE TRUE
MSTRG.20045.16 ENSG00000153827 HEK293_OSMI2_2hA HEK293_TMG_2hB TRIP12 protein_coding   34.30964 21.70554 43.65999 3.30799 1.393346 1.007915 3.917687 1.67941545 5.4119131 0.5957822 0.67937314 1.682278 0.10996250 0.07240000 0.12386667 0.05146667 3.022921e-01 6.207195e-19 FALSE TRUE
MSTRG.20045.17 ENSG00000153827 HEK293_OSMI2_2hA HEK293_TMG_2hB TRIP12 protein_coding   34.30964 21.70554 43.65999 3.30799 1.393346 1.007915 4.049479 8.09203727 0.3895578 0.9864068 0.38955783 -4.341809 0.16220417 0.37743333 0.00890000 -0.36853333 2.510041e-03 6.207195e-19 FALSE TRUE
MSTRG.20045.18 ENSG00000153827 HEK293_OSMI2_2hA HEK293_TMG_2hB TRIP12 protein_coding   34.30964 21.70554 43.65999 3.30799 1.393346 1.007915 7.339539 0.34259219 11.0010478 0.3425922 0.65813535 4.964807 0.17950000 0.01406667 0.25343333 0.23936667 1.388961e-02 6.207195e-19 FALSE TRUE
MSTRG.20045.20 ENSG00000153827 HEK293_OSMI2_2hA HEK293_TMG_2hB TRIP12 protein_coding   34.30964 21.70554 43.65999 3.30799 1.393346 1.007915 1.285171 0.05519456 2.6307640 0.0280898 0.07199505 5.340060 0.03199167 0.00290000 0.06026667 0.05736667 6.207195e-19 6.207195e-19 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000153827 E001 0.7331471 0.0172671820 5.237064e-03 1.657638e-02 2 229763837 229763837 1 - 0.000 0.470 14.511
ENSG00000153827 E002 52.0863586 0.0046246486 2.019725e-07 1.933565e-06 2 229763838 229764006 169 - 1.566 1.897 1.121
ENSG00000153827 E003 75.3523346 0.0073185840 8.786657e-08 9.015901e-07 2 229764007 229764185 179 - 1.718 2.057 1.139
ENSG00000153827 E004 57.6838235 0.0104805958 1.647603e-04 8.125302e-04 2 229764186 229764314 129 - 1.631 1.922 0.986
ENSG00000153827 E005 204.1137243 0.0059994905 4.344098e-01 5.767905e-01 2 229764315 229765106 792 - 2.273 2.332 0.197
ENSG00000153827 E006 170.2411014 0.0004746684 1.652755e-04 8.148164e-04 2 229765107 229765864 758 - 2.245 2.158 -0.292
ENSG00000153827 E007 221.1459369 0.0002080978 5.431339e-05 3.033106e-04 2 229765865 229767225 1361 - 2.354 2.278 -0.255
ENSG00000153827 E008 49.1411968 0.0007944114 1.596436e-05 1.012725e-04 2 229767226 229767238 13 - 1.581 1.831 0.846
ENSG00000153827 E009 92.3224461 0.0086964727 3.273261e-07 3.004844e-06 2 229767239 229767329 91 - 1.810 2.140 1.108
ENSG00000153827 E010 58.5860268 0.0120898314 1.789131e-06 1.406588e-05 2 229767330 229767331 2 - 1.596 1.963 1.241
ENSG00000153827 E011 179.6484899 0.0085268351 5.626927e-16 2.197041e-14 2 229767332 229767384 53 - 2.025 2.477 1.511
ENSG00000153827 E012 219.3816250 0.0091213253 1.851095e-16 7.703962e-15 2 229767385 229767440 56 - 2.106 2.566 1.535
ENSG00000153827 E013 549.7587381 0.0035954134 3.359575e-30 5.749426e-28 2 229767441 229767750 310 - 2.544 2.935 1.301
ENSG00000153827 E014 291.5961431 0.0004130378 6.880457e-56 6.006829e-53 2 229768616 229768719 104 - 2.278 2.662 1.278
ENSG00000153827 E015 280.6237524 0.0050774123 8.754932e-16 3.334531e-14 2 229769231 229769325 95 - 2.275 2.629 1.181
ENSG00000153827 E016 348.0422587 0.0098548782 3.295034e-08 3.680844e-07 2 229771519 229771632 114 - 2.389 2.700 1.036
ENSG00000153827 E017 6.3247244 0.0026505561 7.215667e-02 1.469262e-01 2 229773561 229774096 536 - 0.912 0.690 -0.877
ENSG00000153827 E018 397.3527739 0.0075566557 1.134896e-07 1.141384e-06 2 229774097 229774261 165 - 2.470 2.736 0.886
ENSG00000153827 E019 361.9868161 0.0024299465 3.845137e-11 7.273084e-10 2 229777315 229777479 165 - 2.451 2.677 0.752
ENSG00000153827 E020 290.4480469 0.0011443851 4.189070e-09 5.530361e-08 2 229778433 229778587 155 - 2.376 2.558 0.608
ENSG00000153827 E021 236.9578508 0.0001946674 8.332014e-06 5.637411e-05 2 229778876 229778990 115 - 2.308 2.444 0.453
ENSG00000153827 E022 213.3257997 0.0002197752 5.899602e-07 5.147457e-06 2 229785757 229785855 99 - 2.254 2.409 0.517
ENSG00000153827 E023 258.1522531 0.0001841742 2.200413e-09 3.059535e-08 2 229787505 229787661 157 - 2.334 2.500 0.553
ENSG00000153827 E024 223.0824275 0.0028148199 1.399879e-02 3.822468e-02 2 229788798 229788940 143 - 2.291 2.407 0.388
ENSG00000153827 E025 198.9986964 0.0016986087 1.211446e-01 2.215703e-01 2 229789611 229789762 152 - 2.255 2.331 0.255
ENSG00000153827 E026 192.8099121 0.0023078841 4.935625e-01 6.305648e-01 2 229791124 229791251 128 - 2.252 2.301 0.163
ENSG00000153827 E027 0.1451727 0.0443183663 1.000000e+00   2 229791788 229791865 78 - 0.085 0.000 -10.523
ENSG00000153827 E028 214.2066554 0.0013545880 1.739807e-01 2.933543e-01 2 229791866 229791973 108 - 2.320 2.304 -0.053
ENSG00000153827 E029 208.7178127 0.0021515220 9.688957e-02 1.857387e-01 2 229791974 229792065 92 - 2.314 2.282 -0.106
ENSG00000153827 E030 205.2543357 0.0052003574 2.285330e-01 3.606705e-01 2 229792153 229792226 74 - 2.306 2.273 -0.112
ENSG00000153827 E031 249.0196160 0.0055340746 6.719443e-01 7.780755e-01 2 229792973 229793130 158 - 2.378 2.381 0.011
ENSG00000153827 E032 82.1700036 0.0017063611 5.711140e-01 6.974706e-01 2 229793131 229793145 15 - 1.901 1.903 0.006
ENSG00000153827 E033 1.8361265 0.0085220498 2.269005e-01 3.586858e-01 2 229793146 229793368 223 - 0.501 0.296 -1.154
ENSG00000153827 E034 1.2544922 0.0097178253 2.022340e-01 3.290050e-01 2 229794861 229795178 318 - 0.401 0.173 -1.639
ENSG00000153827 E035 171.6917351 0.0028465384 3.524419e-01 4.966938e-01 2 229795179 229795330 152 - 2.222 2.213 -0.031
ENSG00000153827 E036 158.8511212 0.0080428657 5.424769e-01 6.732302e-01 2 229796591 229796782 192 - 2.188 2.181 -0.021
ENSG00000153827 E037 141.5373029 0.0027871018 1.017228e-02 2.918975e-02 2 229797690 229797831 142 - 2.162 2.082 -0.270
ENSG00000153827 E038 180.3393197 0.0009201580 6.585837e-08 6.931484e-07 2 229798875 229799049 175 - 2.287 2.141 -0.490
ENSG00000153827 E039 130.8725764 0.0002398949 4.205359e-11 7.904480e-10 2 229799283 229799383 101 - 2.163 1.962 -0.673
ENSG00000153827 E040 0.0000000       2 229802251 229802251 1 -      
ENSG00000153827 E041 172.6604150 0.0050319350 7.886262e-06 5.364171e-05 2 229802252 229802459 208 - 2.277 2.093 -0.614
ENSG00000153827 E042 151.8496923 0.0143325484 1.248309e-02 3.469505e-02 2 229803571 229803689 119 - 2.208 2.071 -0.459
ENSG00000153827 E043 194.9877263 0.0172898656 1.656403e-02 4.398170e-02 2 229803999 229804227 229 - 2.316 2.178 -0.461
ENSG00000153827 E044 104.2262939 0.0086046183 5.357464e-03 1.690307e-02 2 229805730 229805802 73 - 2.047 1.910 -0.460
ENSG00000153827 E045 85.0678116 0.0003160288 1.366924e-07 1.352977e-06 2 229805803 229805883 81 - 1.976 1.778 -0.666
ENSG00000153827 E046 4.8632587 0.0039440802 1.065784e-02 3.035140e-02 2 229805884 229806149 266 - 0.850 0.470 -1.640
ENSG00000153827 E047 7.1645155 0.0023297850 1.217514e-04 6.218271e-04 2 229807319 229807704 386 - 1.014 0.470 -2.258
ENSG00000153827 E048 8.6004980 0.0018687333 5.307079e-04 2.274375e-03 2 229807705 229807707 3 - 1.074 0.645 -1.669
ENSG00000153827 E049 171.9004780 0.0002740924 3.075050e-16 1.246116e-14 2 229807708 229807864 157 - 2.285 2.059 -0.755
ENSG00000153827 E050 156.2069962 0.0148913557 3.533576e-04 1.593301e-03 2 229808252 229808369 118 - 2.240 2.029 -0.705
ENSG00000153827 E051 114.5925466 0.0054305254 8.514479e-05 4.523775e-04 2 229810880 229810956 77 - 2.098 1.921 -0.596
ENSG00000153827 E052 105.6312323 0.0021791592 2.598243e-08 2.962916e-07 2 229810957 229811045 89 - 2.074 1.850 -0.755
ENSG00000153827 E053 104.3797858 0.0003390598 1.816183e-10 3.065417e-09 2 229811136 229811204 69 - 2.070 1.847 -0.749
ENSG00000153827 E054 150.7559906 0.0011830719 1.050979e-17 5.147486e-16 2 229813870 229814031 162 - 2.243 1.948 -0.986
ENSG00000153827 E055 122.3267745 0.0067752201 8.528778e-06 5.757587e-05 2 229814233 229814325 93 - 2.136 1.914 -0.744
ENSG00000153827 E056 0.2944980 0.4257562123 6.402560e-01   2 229814326 229814493 168 - 0.157 0.000 -11.522
ENSG00000153827 E057 121.2022677 0.0117217889 2.285897e-06 1.755539e-05 2 229815099 229815194 96 - 2.147 1.868 -0.936
ENSG00000153827 E058 87.0738773 0.0104234027 4.066165e-06 2.952107e-05 2 229815273 229815308 36 - 2.005 1.725 -0.944
ENSG00000153827 E059 163.2851252 0.0101476064 5.860018e-09 7.557784e-08 2 229818364 229818512 149 - 2.284 1.961 -1.081
ENSG00000153827 E060 117.7661082 0.0162540805 4.317961e-07 3.868278e-06 2 229829193 229829288 96 - 2.148 1.805 -1.152
ENSG00000153827 E061 91.7068364 0.0137245532 2.133246e-07 2.034008e-06 2 229830756 229830821 66 - 2.042 1.685 -1.201
ENSG00000153827 E062 52.0845015 0.0013140606 1.140493e-07 1.146466e-06 2 229830822 229830839 18 - 1.783 1.502 -0.958
ENSG00000153827 E063 1.1929815 0.0151543262 2.643946e-02 6.482723e-02 2 229831032 229831146 115 - 0.437 0.000 -13.524
ENSG00000153827 E064 51.3889141 0.0041013628 7.337951e-06 5.027314e-05 2 229836848 229836862 15 - 1.775 1.514 -0.887
ENSG00000153827 E065 130.6008830 0.0124513097 4.584152e-09 6.019642e-08 2 229836863 229836984 122 - 2.197 1.830 -1.230
ENSG00000153827 E066 112.1830566 0.0104655705 3.551486e-11 6.752493e-10 2 229840822 229840927 106 - 2.139 1.723 -1.399
ENSG00000153827 E067 89.7554169 0.0049830692 1.041385e-14 3.415637e-13 2 229858772 229858831 60 - 2.045 1.618 -1.439
ENSG00000153827 E068 70.6810554 0.0004115323 9.585729e-17 4.133821e-15 2 229858832 229858918 87 - 1.938 1.546 -1.329
ENSG00000153827 E069 101.6812928 0.0019090456 2.210614e-25 2.504750e-23 2 229858919 229859017 99 - 2.109 1.623 -1.638
ENSG00000153827 E070 133.6621308 0.0078253275 9.148716e-15 3.026889e-13 2 229859018 229859210 193 - 2.218 1.793 -1.427
ENSG00000153827 E071 61.1823478 0.0171493653 7.816545e-06 5.321717e-05 2 229859211 229859225 15 - 1.868 1.515 -1.200
ENSG00000153827 E072 52.4878200 0.0105561242 1.216716e-06 9.922460e-06 2 229859226 229859227 2 - 1.803 1.452 -1.194
ENSG00000153827 E073 96.0626193 0.0163404963 2.632109e-05 1.587082e-04 2 229859228 229859282 55 - 2.049 1.754 -0.996
ENSG00000153827 E074 126.0022188 0.0147325301 3.056149e-07 2.822632e-06 2 229859283 229859375 93 - 2.176 1.830 -1.159
ENSG00000153827 E075 170.6672740 0.0121056630 2.054042e-11 4.062346e-10 2 229859376 229859574 199 - 2.319 1.907 -1.381
ENSG00000153827 E076 69.2237129 0.0003488142 1.299711e-22 1.110628e-20 2 229860406 229860531 126 - 1.945 1.452 -1.673
ENSG00000153827 E077 118.3420334 0.0160700594 1.664251e-12 3.930774e-11 2 229879982 229880128 147 - 2.179 1.647 -1.791
ENSG00000153827 E078 0.4418608 0.0269316454 2.853269e-01 4.256347e-01 2 229900737 229900858 122 - 0.218 0.000 -12.108
ENSG00000153827 E079 11.2958687 0.0178486397 1.798734e-02 4.710534e-02 2 229908965 229909082 118 - 1.147 0.867 -1.038
ENSG00000153827 E080 0.6319842 0.0259977528 7.745624e-01 8.547062e-01 2 229909083 229909086 4 - 0.218 0.173 -0.418
ENSG00000153827 E081 0.5138669 0.0219528226 1.000000e+00 1.000000e+00 2 229920728 229920760 33 - 0.157 0.173 0.170
ENSG00000153827 E082 3.2230172 0.0951137632 4.924605e-01 6.296376e-01 2 229921271 229921563 293 - 0.650 0.536 -0.508
ENSG00000153827 E083 6.4709068 0.0025536242 8.621121e-06 5.813710e-05 2 229921564 229921879 316 - 0.996 0.296 -3.190
ENSG00000153827 E084 40.7549699 0.0007191620 3.657472e-13 9.606227e-12 2 229921880 229922147 268 - 1.714 1.245 -1.615
ENSG00000153827 E085 9.6018685 0.2063613695 1.291088e-01 2.329386e-01 2 229922882 229922999 118 - 1.091 0.754 -1.279
ENSG00000153827 E086 2.0359155 0.0075287010 1.714549e-01 2.900921e-01 2 229923000 229923147 148 - 0.530 0.296 -1.291
ENSG00000153827 E087 3.9032646 0.0040254180 1.468199e-02 3.977245e-02 2 229923148 229923472 325 - 0.778 0.391 -1.771