ENSG00000153113

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000309190 ENSG00000153113 HEK293_OSMI2_2hA HEK293_TMG_2hB CAST protein_coding protein_coding 27.35168 13.24316 40.33016 0.2501811 0.3086673 1.60588 6.6331279 1.9238415 11.04345296 0.9661996 0.42244711 2.5149556 0.22720000 0.14300000 0.27400000 0.13100000 6.524827e-01 2.585648e-11 FALSE TRUE
ENST00000509903 ENSG00000153113 HEK293_OSMI2_2hA HEK293_TMG_2hB CAST protein_coding protein_coding 27.35168 13.24316 40.33016 0.2501811 0.3086673 1.60588 6.2912470 1.0019974 9.83016870 0.5235887 1.09504633 3.2814774 0.18802917 0.07603333 0.24380000 0.16776667 4.089751e-01 2.585648e-11 FALSE TRUE
ENST00000675663 ENSG00000153113 HEK293_OSMI2_2hA HEK293_TMG_2hB CAST protein_coding protein_coding 27.35168 13.24316 40.33016 0.2501811 0.3086673 1.60588 0.3020492 0.7532846 0.06510408 0.1271708 0.06510408 -3.3452579 0.01564167 0.05683333 0.00160000 -0.05523333 7.487196e-04 2.585648e-11 FALSE TRUE
ENST00000675734 ENSG00000153113 HEK293_OSMI2_2hA HEK293_TMG_2hB CAST protein_coding processed_transcript 27.35168 13.24316 40.33016 0.2501811 0.3086673 1.60588 3.8273831 1.8240495 2.91890678 0.4397276 1.85017736 0.6753297 0.14309583 0.13663333 0.07283333 -0.06380000 6.778479e-01 2.585648e-11 FALSE TRUE
MSTRG.26659.28 ENSG00000153113 HEK293_OSMI2_2hA HEK293_TMG_2hB CAST protein_coding   27.35168 13.24316 40.33016 0.2501811 0.3086673 1.60588 1.7332209 2.3781017 1.59677611 0.1463795 0.39082801 -0.5716953 0.08639583 0.18003333 0.03966667 -0.14036667 4.062335e-06 2.585648e-11 FALSE TRUE
MSTRG.26659.30 ENSG00000153113 HEK293_OSMI2_2hA HEK293_TMG_2hB CAST protein_coding   27.35168 13.24316 40.33016 0.2501811 0.3086673 1.60588 0.8592876 0.0000000 3.76054869 0.0000000 2.10617444 8.5586307 0.02152500 0.00000000 0.09273333 0.09273333 2.876078e-01 2.585648e-11 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000153113 E001 0.0000000       5 96525267 96525427 161 +      
ENSG00000153113 E002 0.0000000       5 96529821 96529880 60 +      
ENSG00000153113 E003 0.0000000       5 96545216 96545320 105 +      
ENSG00000153113 E004 0.0000000       5 96546228 96546518 291 +      
ENSG00000153113 E005 0.3634088 0.3304152303 8.197804e-02   5 96662055 96662072 18 + 0.000 0.315 11.851
ENSG00000153113 E006 0.3634088 0.3304152303 8.197804e-02   5 96662073 96662073 1 + 0.000 0.315 13.981
ENSG00000153113 E007 1.1039323 0.0118530921 1.065723e-01 2.004945e-01 5 96662074 96662125 52 + 0.204 0.493 1.813
ENSG00000153113 E008 1.5499457 0.0092992360 4.053722e-01 5.490559e-01 5 96662126 96662165 40 + 0.343 0.493 0.814
ENSG00000153113 E009 0.4439371 0.0215718357 3.665540e-01 5.108963e-01 5 96662203 96662236 34 + 0.204 0.000 -14.438
ENSG00000153113 E010 1.4875932 0.0101950130 2.209963e-02 5.588387e-02 5 96662237 96662329 93 + 0.478 0.000 -16.119
ENSG00000153113 E011 1.8208130 0.0266230110 1.066446e-01 2.005967e-01 5 96662330 96662351 22 + 0.506 0.184 -2.060
ENSG00000153113 E012 3.9598686 0.0045574246 3.285207e-01 4.720236e-01 5 96662352 96662375 24 + 0.717 0.561 -0.671
ENSG00000153113 E013 4.6210096 0.0229938255 9.055742e-01 9.439247e-01 5 96662376 96662402 27 + 0.733 0.718 -0.064
ENSG00000153113 E014 4.6607636 0.1085066077 8.702958e-01 9.205746e-01 5 96662403 96662422 20 + 0.734 0.717 -0.069
ENSG00000153113 E015 4.2125600 0.0900091773 9.197439e-01 9.533010e-01 5 96662423 96662427 5 + 0.682 0.717 0.145
ENSG00000153113 E016 6.2547165 0.0517519613 8.045478e-01 8.756415e-01 5 96662428 96662474 47 + 0.821 0.865 0.170
ENSG00000153113 E017 5.9956798 0.0035613049 5.939021e-01 7.162097e-01 5 96662475 96662497 23 + 0.793 0.866 0.284
ENSG00000153113 E018 0.1515154 0.0426157654 1.000000e+00   5 96663000 96663003 4 + 0.079 0.000 -12.795
ENSG00000153113 E019 0.5933762 0.0225711162 2.319371e-01 3.647545e-01 5 96663004 96663020 17 + 0.256 0.000 -14.836
ENSG00000153113 E020 0.5933762 0.0225711162 2.319371e-01 3.647545e-01 5 96663021 96663024 4 + 0.256 0.000 -14.836
ENSG00000153113 E021 0.5933762 0.0225711162 2.319371e-01 3.647545e-01 5 96663025 96663030 6 + 0.256 0.000 -14.836
ENSG00000153113 E022 3.0279834 0.0687725007 5.438747e-02 1.169316e-01 5 96663031 96663166 136 + 0.448 0.795 1.537
ENSG00000153113 E023 14.6532252 0.0011807988 2.040873e-01 3.312861e-01 5 96675539 96675601 63 + 1.121 1.240 0.424
ENSG00000153113 E024 0.0000000       5 96675602 96675953 352 +      
ENSG00000153113 E025 1.7046677 0.0202563645 3.794330e-02 8.724339e-02 5 96679317 96679632 316 + 0.256 0.621 1.986
ENSG00000153113 E026 0.2214452 0.0393305402 1.796959e-01   5 96695785 96695835 51 + 0.000 0.185 14.057
ENSG00000153113 E027 17.5813510 0.0091982580 2.015841e-01 3.281588e-01 5 96695836 96695876 41 + 1.193 1.314 0.426
ENSG00000153113 E028 18.6114382 0.0010096944 7.148244e-02 1.458041e-01 5 96695877 96695907 31 + 1.205 1.356 0.529
ENSG00000153113 E029 0.0000000       5 96695908 96696294 387 +      
ENSG00000153113 E030 1.2051864 0.0553752658 8.867079e-01 9.315375e-01 5 96702781 96702787 7 + 0.342 0.313 -0.187
ENSG00000153113 E031 1.8016831 0.0085922207 8.416603e-01 9.012329e-01 5 96702788 96702788 1 + 0.448 0.412 -0.186
ENSG00000153113 E032 3.8602989 0.0044090760 9.622287e-01 9.801769e-01 5 96702789 96702798 10 + 0.663 0.672 0.037
ENSG00000153113 E033 4.2237077 0.0060876279 5.199800e-01 6.540211e-01 5 96702799 96702799 1 + 0.663 0.760 0.400
ENSG00000153113 E034 4.2237077 0.0060876279 5.199800e-01 6.540211e-01 5 96702800 96702800 1 + 0.663 0.760 0.400
ENSG00000153113 E035 4.5267385 0.0037889917 6.848895e-01 7.877203e-01 5 96702801 96702801 1 + 0.700 0.760 0.248
ENSG00000153113 E036 4.6782540 0.0036273572 7.717722e-01 8.526702e-01 5 96702802 96702802 1 + 0.717 0.760 0.177
ENSG00000153113 E037 5.3006732 0.0033692303 5.465337e-01 6.767000e-01 5 96702803 96702805 3 + 0.749 0.833 0.336
ENSG00000153113 E038 23.0921131 0.0028539482 7.652153e-03 2.290640e-02 5 96702806 96702825 20 + 1.412 1.184 -0.800
ENSG00000153113 E039 32.9877876 0.0012731998 2.383574e-04 1.126405e-03 5 96702826 96702842 17 + 1.569 1.302 -0.922
ENSG00000153113 E040 47.5303536 0.0009464184 8.238434e-05 4.392881e-04 5 96702843 96702856 14 + 1.717 1.478 -0.813
ENSG00000153113 E041 83.3097173 0.0005495510 4.051648e-08 4.450986e-07 5 96702857 96702915 59 + 1.960 1.705 -0.859
ENSG00000153113 E042 0.0000000       5 96703188 96703221 34 +      
ENSG00000153113 E043 0.0000000       5 96703222 96703372 151 +      
ENSG00000153113 E044 0.0000000       5 96703373 96703424 52 +      
ENSG00000153113 E045 0.7310603 0.0523406121 7.165052e-01 8.121515e-01 5 96712349 96712473 125 + 0.255 0.184 -0.603
ENSG00000153113 E046 1.2283792 0.1424265882 2.701524e-01 4.087345e-01 5 96714641 96715108 468 + 0.256 0.488 1.368
ENSG00000153113 E047 123.3188465 0.0013786797 5.570739e-08 5.940999e-07 5 96722639 96722698 60 + 2.121 1.899 -0.745
ENSG00000153113 E048 0.9180632 0.0133076446 5.371813e-01 6.688126e-01 5 96722699 96722718 20 + 0.301 0.184 -0.922
ENSG00000153113 E049 0.1515154 0.0426157654 1.000000e+00   5 96726754 96726793 40 + 0.079 0.000 -12.795
ENSG00000153113 E050 7.2109457 0.0093005483 3.967510e-01 5.405252e-01 5 96726794 96726859 66 + 0.914 0.799 -0.444
ENSG00000153113 E051 112.9646234 0.0002713023 3.074441e-11 5.911333e-10 5 96727489 96727530 42 + 2.091 1.827 -0.887
ENSG00000153113 E052 0.0000000       5 96728309 96728418 110 +      
ENSG00000153113 E053 1.0308689 0.0127662539 9.552803e-01 9.759379e-01 5 96728588 96729152 565 + 0.301 0.313 0.076
ENSG00000153113 E054 101.7094745 0.0026476186 7.603648e-08 7.901746e-07 5 96729153 96729209 57 + 2.045 1.784 -0.879
ENSG00000153113 E055 0.8973375 0.0800917322 5.528145e-01 6.820562e-01 5 96729590 96729611 22 + 0.302 0.184 -0.931
ENSG00000153113 E056 161.4108271 0.0002042870 4.053737e-09 5.369282e-08 5 96729612 96729725 114 + 2.230 2.041 -0.631
ENSG00000153113 E057 121.6088102 0.0002480028 3.892229e-04 1.733034e-03 5 96730780 96730860 81 + 2.091 1.964 -0.428
ENSG00000153113 E058 65.3271967 0.0004660917 7.127656e-01 8.093898e-01 5 96736172 96736175 4 + 1.792 1.776 -0.053
ENSG00000153113 E059 107.9275483 0.0002974296 1.768013e-01 2.970817e-01 5 96736176 96736240 65 + 2.018 1.969 -0.165
ENSG00000153113 E060 130.1916694 0.0002800416 1.692755e-03 6.259879e-03 5 96737849 96737947 99 + 2.115 2.006 -0.365
ENSG00000153113 E061 98.0263144 0.0032408281 2.889189e-02 6.978634e-02 5 96740038 96740118 81 + 1.992 1.886 -0.356
ENSG00000153113 E062 56.3083196 0.0004171310 7.215319e-03 2.178359e-02 5 96740745 96740783 39 + 1.767 1.626 -0.480
ENSG00000153113 E063 96.4563539 0.0003066186 9.441337e-02 1.820013e-01 5 96741266 96741324 59 + 1.976 1.910 -0.219
ENSG00000153113 E064 72.5067980 0.0003734334 4.952184e-01 6.320623e-01 5 96741325 96741341 17 + 1.842 1.813 -0.099
ENSG00000153113 E065 65.0555182 0.0003641514 4.652252e-01 6.049400e-01 5 96741342 96741358 17 + 1.797 1.764 -0.112
ENSG00000153113 E066 94.7615724 0.0004254690 7.084324e-01 8.060801e-01 5 96741494 96741580 87 + 1.951 1.938 -0.044
ENSG00000153113 E067 0.1451727 0.0426648649 1.000000e+00   5 96741581 96741873 293 + 0.079 0.000 -12.794
ENSG00000153113 E068 0.0000000       5 96741874 96742156 283 +      
ENSG00000153113 E069 0.1515154 0.0426157654 1.000000e+00   5 96742157 96742194 38 + 0.079 0.000 -12.795
ENSG00000153113 E070 0.1515154 0.0426157654 1.000000e+00   5 96742195 96742220 26 + 0.079 0.000 -12.795
ENSG00000153113 E071 0.2966881 0.0290785164 6.243139e-01   5 96742221 96742478 258 + 0.146 0.000 -13.839
ENSG00000153113 E072 0.2987644 0.0290785164 6.229692e-01   5 96742479 96742654 176 + 0.146 0.000 -13.839
ENSG00000153113 E073 129.8186198 0.0002414686 1.334626e-01 2.389484e-01 5 96742655 96742756 102 + 2.099 2.049 -0.166
ENSG00000153113 E074 0.0000000       5 96743540 96743568 29 +      
ENSG00000153113 E075 0.0000000       5 96743569 96743626 58 +      
ENSG00000153113 E076 0.0000000       5 96743627 96743672 46 +      
ENSG00000153113 E077 0.0000000       5 96743673 96743746 74 +      
ENSG00000153113 E078 148.1357855 0.0002758646 1.920638e-01 3.163332e-01 5 96746342 96746425 84 + 2.152 2.112 -0.134
ENSG00000153113 E079 119.2702204 0.0002331358 9.271849e-01 9.581894e-01 5 96747345 96747392 48 + 2.048 2.047 -0.004
ENSG00000153113 E080 0.1515154 0.0426157654 1.000000e+00   5 96747393 96747399 7 + 0.079 0.000 -12.795
ENSG00000153113 E081 136.3137116 0.0009548819 6.513035e-01 7.621920e-01 5 96748518 96748613 96 + 2.109 2.094 -0.049
ENSG00000153113 E082 0.1451727 0.0426648649 1.000000e+00   5 96748614 96748717 104 + 0.079 0.000 -12.794
ENSG00000153113 E083 68.0401921 0.0064821352 4.893606e-01 6.268065e-01 5 96750587 96750600 14 + 1.822 1.782 -0.137
ENSG00000153113 E084 93.4879096 0.0026513666 1.564567e-01 2.703983e-01 5 96750601 96750654 54 + 1.964 1.899 -0.221
ENSG00000153113 E085 101.1981159 0.0006069523 1.286328e-01 2.322562e-01 5 96750655 96750682 28 + 1.996 1.938 -0.197
ENSG00000153113 E086 0.0000000       5 96752052 96752119 68 +      
ENSG00000153113 E087 147.3980497 0.0003831193 3.215301e-01 4.647854e-01 5 96754060 96754161 102 + 2.149 2.119 -0.101
ENSG00000153113 E088 131.2702575 0.0005296133 9.229536e-01 9.554061e-01 5 96754658 96754741 84 + 2.091 2.090 -0.004
ENSG00000153113 E089 0.9106883 0.3390083315 6.622679e-01 7.706060e-01 5 96754742 96755196 455 + 0.254 0.310 0.390
ENSG00000153113 E090 0.0000000       5 96757178 96757336 159 +      
ENSG00000153113 E091 90.0769962 0.0004039041 2.656985e-04 1.239981e-03 5 96757444 96757494 51 + 1.878 2.024 0.490
ENSG00000153113 E092 54.6537405 0.0004501971 1.002307e-03 3.966331e-03 5 96757583 96757585 3 + 1.658 1.823 0.559
ENSG00000153113 E093 107.8169020 0.0002872418 5.326047e-03 1.681945e-02 5 96757586 96757654 69 + 1.968 2.071 0.346
ENSG00000153113 E094 163.5482139 0.0007528384 6.310388e-02 1.318820e-01 5 96762274 96762372 99 + 2.162 2.223 0.205
ENSG00000153113 E095 80.9073546 0.0003485632 8.587315e-02 1.687804e-01 5 96765221 96765223 3 + 1.858 1.932 0.250
ENSG00000153113 E096 194.3710659 0.0001902382 5.415945e-02 1.165290e-01 5 96765224 96765325 102 + 2.241 2.296 0.183
ENSG00000153113 E097 185.3036107 0.0002100160 6.629844e-02 1.372157e-01 5 96766053 96766145 93 + 2.221 2.274 0.179
ENSG00000153113 E098 145.1324757 0.0008486752 2.015920e-02 5.181743e-02 5 96767438 96767482 45 + 2.107 2.188 0.270
ENSG00000153113 E099 194.8513181 0.0002645047 7.464830e-03 2.242396e-02 5 96767907 96767999 93 + 2.235 2.311 0.252
ENSG00000153113 E100 3.1806222 0.0049689697 3.690067e-01 5.134384e-01 5 96768948 96770530 1583 + 0.644 0.493 -0.688
ENSG00000153113 E101 164.6982446 0.0015976086 1.243860e-02 3.459068e-02 5 96770531 96770602 72 + 2.158 2.246 0.294
ENSG00000153113 E102 143.3813054 0.0034865249 3.705665e-02 8.557863e-02 5 96771644 96771702 59 + 2.099 2.189 0.301
ENSG00000153113 E103 1.4499262 0.0207724550 7.114112e-01 8.083799e-01 5 96771703 96772639 937 + 0.343 0.413 0.400
ENSG00000153113 E104 189.8396779 0.0002921008 1.167507e-07 1.171384e-06 5 96772640 96772887 248 + 2.199 2.346 0.492
ENSG00000153113 E105 172.5989865 0.0006069790 1.662698e-05 1.050117e-04 5 96772888 96773267 380 + 2.162 2.294 0.439
ENSG00000153113 E106 68.1319276 0.0020211439 7.472630e-01 8.348030e-01 5 96773268 96773346 79 + 1.810 1.795 -0.048
ENSG00000153113 E107 358.6145243 0.0008137137 1.507690e-11 3.049946e-10 5 96773347 96774683 1337 + 2.469 2.626 0.523
ENSG00000153113 E108 0.8804848 0.1467561324 5.704886e-01 6.969585e-01 5 96776868 96776954 87 + 0.204 0.318 0.846
ENSG00000153113 E109 0.1472490 0.0429248061 1.000000e+00   5 96776955 96776987 33 + 0.079 0.000 -12.793
ENSG00000153113 E110 1.4424375 0.0094148529 2.867176e-01 4.271307e-01 5 96779322 96779640 319 + 0.301 0.493 1.078
ENSG00000153113 E111 0.1817044 0.0396933290 1.804390e-01   5 96781559 96781590 32 + 0.000 0.184 14.051