ENSG00000152818

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000367526 ENSG00000152818 HEK293_OSMI2_2hA HEK293_TMG_2hB UTRN protein_coding protein_coding 6.62199 4.709068 8.880195 0.4174187 0.03950138 0.9137129 0.5036945 0.82435001 0.1408860 0.16565909 0.1408860 -2.467193 0.10773333 0.17180000 0.01576667 -0.15603333 2.935856e-02 4.08623e-28 FALSE TRUE
ENST00000367545 ENSG00000152818 HEK293_OSMI2_2hA HEK293_TMG_2hB UTRN protein_coding protein_coding 6.62199 4.709068 8.880195 0.4174187 0.03950138 0.9137129 2.2619361 0.44245588 4.2354181 0.11848538 0.1212070 3.230058 0.28099583 0.09063333 0.47706667 0.38643333 1.578581e-15 4.08623e-28 FALSE TRUE
ENST00000417142 ENSG00000152818 HEK293_OSMI2_2hA HEK293_TMG_2hB UTRN protein_coding protein_coding 6.62199 4.709068 8.880195 0.4174187 0.03950138 0.9137129 0.7814991 0.05761617 0.7943771 0.05761617 0.5587472 3.572432 0.09492083 0.01486667 0.08916667 0.07430000 6.384918e-01 4.08623e-28 FALSE FALSE
MSTRG.29095.2 ENSG00000152818 HEK293_OSMI2_2hA HEK293_TMG_2hB UTRN protein_coding   6.62199 4.709068 8.880195 0.4174187 0.03950138 0.9137129 0.2397540 0.06039440 0.6149524 0.06039440 0.1165409 3.150214 0.02913333 0.01193333 0.06926667 0.05733333 7.599819e-02 4.08623e-28 FALSE TRUE
MSTRG.29095.4 ENSG00000152818 HEK293_OSMI2_2hA HEK293_TMG_2hB UTRN protein_coding   6.62199 4.709068 8.880195 0.4174187 0.03950138 0.9137129 1.3500955 0.32571659 2.1064430 0.20934336 0.2037028 2.656326 0.18447500 0.06843333 0.23736667 0.16893333 1.852420e-01 4.08623e-28 FALSE TRUE
MSTRG.29095.9 ENSG00000152818 HEK293_OSMI2_2hA HEK293_TMG_2hB UTRN protein_coding   6.62199 4.709068 8.880195 0.4174187 0.03950138 0.9137129 1.1346795 2.79064785 0.0000000 0.17596987 0.0000000 -8.129617 0.24714167 0.60066667 0.00000000 -0.60066667 4.086230e-28 4.08623e-28 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000152818 E001 16.0234815 0.0012210353 4.369522e-02 9.782817e-02 6 144285335 144285700 366 + 1.164 1.034 -0.468
ENSG00000152818 E002 10.6438902 0.0015786898 4.606976e-03 1.483937e-02 6 144285701 144285821 121 + 1.028 0.717 -1.199
ENSG00000152818 E003 0.2944980 0.3176550509 1.000000e+00   6 144286452 144286571 120 + 0.115 0.000 -9.441
ENSG00000152818 E004 23.9534029 0.0007867992 2.390356e-04 1.129174e-03 6 144291737 144291907 171 + 1.351 1.087 -0.934
ENSG00000152818 E005 0.0000000       6 144330820 144331018 199 +      
ENSG00000152818 E006 0.0000000       6 144344101 144344304 204 +      
ENSG00000152818 E007 17.6233149 0.0009996862 1.076209e-02 3.059493e-02 6 144403123 144403184 62 + 1.215 1.034 -0.649
ENSG00000152818 E008 22.0041718 0.0008851624 6.194977e-06 4.319225e-05 6 144421878 144421970 93 + 1.333 0.940 -1.412
ENSG00000152818 E009 20.1867067 0.0009294005 4.337495e-05 2.480156e-04 6 144423549 144423626 78 + 1.295 0.940 -1.279
ENSG00000152818 E010 21.4354950 0.0008637779 4.444072e-05 2.535357e-04 6 144423986 144424078 93 + 1.314 0.974 -1.221
ENSG00000152818 E011 26.8483721 0.0006893155 2.582600e-04 1.209557e-03 6 144426287 144426459 173 + 1.395 1.156 -0.840
ENSG00000152818 E012 22.1393114 0.0009690461 5.183588e-04 2.228715e-03 6 144428778 144428893 116 + 1.318 1.062 -0.910
ENSG00000152818 E013 22.8177230 0.0084355921 1.534073e-04 7.621764e-04 6 144429581 144429741 161 + 1.339 1.005 -1.192
ENSG00000152818 E014 25.3031758 0.0007467719 4.146182e-08 4.546664e-07 6 144435935 144436138 204 + 1.395 0.904 -1.766
ENSG00000152818 E015 26.8234723 0.0007049092 1.182071e-07 1.184804e-06 6 144437565 144437746 182 + 1.416 0.974 -1.574
ENSG00000152818 E016 19.9688794 0.0009798482 2.101370e-04 1.007232e-03 6 144438745 144438895 151 + 1.281 0.974 -1.106
ENSG00000152818 E017 19.3540876 0.0009135663 1.293023e-04 6.558132e-04 6 144440352 144440471 120 + 1.271 0.940 -1.195
ENSG00000152818 E018 19.8002163 0.0009548666 2.155589e-05 1.326178e-04 6 144444281 144444382 102 + 1.288 0.904 -1.393
ENSG00000152818 E019 25.1675495 0.0007965164 6.832105e-05 3.720385e-04 6 144447211 144447318 108 + 1.376 1.087 -1.022
ENSG00000152818 E020 33.8716771 0.0005675505 4.307897e-04 1.892732e-03 6 144447602 144447781 180 + 1.486 1.300 -0.644
ENSG00000152818 E021 29.1132491 0.0006802729 8.328334e-05 4.435449e-04 6 144448600 144448769 170 + 1.431 1.177 -0.888
ENSG00000152818 E022 23.5285531 0.0009299372 8.745215e-04 3.525010e-03 6 144451370 144451493 124 + 1.339 1.112 -0.805
ENSG00000152818 E023 20.2799731 0.0009576116 1.253179e-02 3.480946e-02 6 144453782 144453869 88 + 1.267 1.112 -0.554
ENSG00000152818 E024 29.7561666 0.0006515459 2.622632e-04 1.225791e-03 6 144458770 144459011 242 + 1.436 1.216 -0.767
ENSG00000152818 E025 23.4282145 0.0024939465 1.460115e-07 1.436833e-06 6 144459174 144459354 181 + 1.365 0.864 -1.813
ENSG00000152818 E026 24.9446773 0.0065759913 1.571280e-03 5.865733e-03 6 144461197 144461342 146 + 1.362 1.135 -0.799
ENSG00000152818 E027 27.6706676 0.0006856525 3.535216e-04 1.593851e-03 6 144462654 144462866 213 + 1.403 1.177 -0.792
ENSG00000152818 E028 20.0813449 0.0008946565 1.591727e-03 5.932828e-03 6 144473720 144473833 114 + 1.271 1.034 -0.846
ENSG00000152818 E029 23.5999852 0.0682898010 2.004537e-02 5.158292e-02 6 144474604 144474759 156 + 1.346 1.088 -0.913
ENSG00000152818 E030 33.3800027 0.0447775360 1.196638e-03 4.629072e-03 6 144479812 144479982 171 + 1.501 1.154 -1.210
ENSG00000152818 E031 31.6130994 0.0394235106 1.925629e-03 6.995297e-03 6 144482209 144482388 180 + 1.477 1.152 -1.138
ENSG00000152818 E032 28.1997413 0.0087976727 7.627225e-04 3.124429e-03 6 144485385 144485519 135 + 1.421 1.176 -0.859
ENSG00000152818 E033 30.1485277 0.0006644611 3.889164e-07 3.514551e-06 6 144487548 144487697 150 + 1.461 1.087 -1.316
ENSG00000152818 E034 26.5125254 0.0007190929 7.287440e-06 4.995418e-05 6 144488673 144488834 162 + 1.401 1.062 -1.199
ENSG00000152818 E035 23.7963506 0.0010018264 1.377711e-05 8.861084e-05 6 144490071 144490199 129 + 1.357 1.005 -1.253
ENSG00000152818 E036 28.4621095 0.0007244816 2.673479e-05 1.609517e-04 6 144490929 144491102 174 + 1.423 1.135 -1.014
ENSG00000152818 E037 25.9949412 0.0007151683 2.420516e-04 1.141888e-03 6 144493301 144493456 156 + 1.382 1.134 -0.871
ENSG00000152818 E038 32.9241020 0.0006057762 9.533803e-04 3.799542e-03 6 144499257 144499427 171 + 1.470 1.300 -0.591
ENSG00000152818 E039 31.5530648 0.0006538447 4.022306e-02 9.144245e-02 6 144510944 144511123 180 + 1.436 1.370 -0.227
ENSG00000152818 E040 27.1632146 0.0012477950 1.188332e-01 2.182807e-01 6 144513909 144514037 129 + 1.365 1.329 -0.125
ENSG00000152818 E041 30.4211111 0.0006526579 1.582078e-04 7.837251e-04 6 144514650 144514820 171 + 1.445 1.216 -0.800
ENSG00000152818 E042 26.7657225 0.0080248063 4.933697e-04 2.134837e-03 6 144516229 144516387 159 + 1.396 1.135 -0.916
ENSG00000152818 E043 30.8184116 0.0034211949 2.405395e-04 1.135518e-03 6 144516811 144516948 138 + 1.450 1.216 -0.815
ENSG00000152818 E044 39.2043927 0.0145066010 1.494018e-01 2.608469e-01 6 144521980 144522171 192 + 1.514 1.490 -0.083
ENSG00000152818 E045 39.5761043 0.0007594944 3.409465e-03 1.146516e-02 6 144523016 144523188 173 + 1.536 1.419 -0.401
ENSG00000152818 E046 38.9980114 0.0012939142 1.524595e-03 5.716803e-03 6 144531052 144531202 151 + 1.536 1.396 -0.484
ENSG00000152818 E047 45.8323316 0.0054715029 3.244496e-02 7.671073e-02 6 144533085 144533260 176 + 1.590 1.533 -0.196
ENSG00000152818 E048 41.5410579 0.0005468937 4.027252e-04 1.785056e-03 6 144537582 144537717 136 + 1.566 1.408 -0.543
ENSG00000152818 E049 34.8278349 0.0007122913 1.666522e-03 6.174923e-03 6 144539294 144539443 150 + 1.492 1.343 -0.514
ENSG00000152818 E050 23.3100766 0.0011382717 3.599584e-02 8.357502e-02 6 144542795 144542870 76 + 1.314 1.216 -0.347
ENSG00000152818 E051 44.1588906 0.0005261394 2.733964e-05 1.642016e-04 6 144548640 144548854 215 + 1.598 1.395 -0.696
ENSG00000152818 E052 31.6830828 0.0028779604 1.266285e-02 3.511692e-02 6 144550965 144551082 118 + 1.443 1.330 -0.391
ENSG00000152818 E053 42.1094445 0.0152650651 4.399216e-01 5.816467e-01 6 144554688 144554893 206 + 1.538 1.574 0.125
ENSG00000152818 E054 39.2282325 0.0039317643 1.763524e-01 2.964957e-01 6 144557157 144557311 155 + 1.516 1.513 -0.012
ENSG00000152818 E055 47.4917302 0.0005070055 3.044614e-01 4.464652e-01 6 144577099 144577288 190 + 1.588 1.620 0.109
ENSG00000152818 E056 0.0000000       6 144583210 144583600 391 +      
ENSG00000152818 E057 0.4815130 0.0207562700 9.216691e-02 1.785071e-01 6 144659844 144660275 432 + 0.061 0.380 3.214
ENSG00000152818 E058 45.8275819 0.0006005965 4.963597e-01 6.330499e-01 6 144678406 144678578 173 + 1.567 1.620 0.179
ENSG00000152818 E059 45.5010181 0.0032221745 5.003228e-01 6.365872e-01 6 144700087 144700243 157 + 1.562 1.614 0.176
ENSG00000152818 E060 42.1317469 0.0005139483 1.820818e-01 3.038203e-01 6 144730357 144730486 130 + 1.542 1.549 0.024
ENSG00000152818 E061 59.1354947 0.0003731574 1.826449e-02 4.770847e-02 6 144748246 144748514 269 + 1.694 1.655 -0.133
ENSG00000152818 E062 36.2872037 0.0009259695 3.383464e-02 7.942347e-02 6 144751806 144751952 147 + 1.492 1.431 -0.210
ENSG00000152818 E063 0.1817044 0.0383299930 1.179883e-01   6 144754714 144754719 6 + 0.000 0.231 12.597
ENSG00000152818 E064 31.2157448 0.0010094306 5.321830e-01 6.645561e-01 6 144754720 144754798 79 + 1.406 1.453 0.163
ENSG00000152818 E065 34.4574377 0.0388257954 5.974899e-01 7.192316e-01 6 144757929 144757989 61 + 1.444 1.511 0.227
ENSG00000152818 E066 0.0000000       6 144757990 144758310 321 +      
ENSG00000152818 E067 38.6462034 0.0084063909 3.341745e-01 4.779251e-01 6 144771907 144771968 62 + 1.502 1.524 0.076
ENSG00000152818 E068 40.1923456 0.0005293786 5.432688e-01 6.738996e-01 6 144774290 144774364 75 + 1.494 1.627 0.455
ENSG00000152818 E069 55.6036184 0.0004373145 3.857214e-03 1.274128e-02 6 144781922 144782123 202 + 1.597 1.844 0.837
ENSG00000152818 E070 29.5829376 0.0007161436 2.457016e-01 3.808682e-01 6 144789194 144789228 35 + 1.354 1.531 0.611
ENSG00000152818 E071 24.4260748 0.0008730111 9.331238e-02 1.802952e-01 6 144789229 144789279 51 + 1.260 1.484 0.776
ENSG00000152818 E072 39.8596150 0.0050787121 1.468094e-02 3.977149e-02 6 144793834 144793991 158 + 1.450 1.713 0.900
ENSG00000152818 E073 0.0000000       6 144797745 144797823 79 +      
ENSG00000152818 E074 48.5821061 0.0036666583 2.485440e-02 6.156954e-02 6 144797824 144797990 167 + 1.542 1.779 0.805
ENSG00000152818 E075 0.0000000       6 144799381 144799473 93 +      
ENSG00000152818 E076 39.4295636 0.0022233969 8.758423e-01 9.242676e-01 6 144803036 144803147 112 + 1.492 1.598 0.362
ENSG00000152818 E077 52.4006255 0.0004152687 6.251347e-01 7.413173e-01 6 144820882 144821018 137 + 1.621 1.688 0.227
ENSG00000152818 E078 34.4317867 0.0006300859 6.091005e-01 7.286552e-01 6 144827348 144827386 39 + 1.428 1.557 0.442
ENSG00000152818 E079 44.2871643 0.0005271512 1.332459e-02 3.667639e-02 6 144827611 144827676 66 + 1.500 1.741 0.818
ENSG00000152818 E080 40.1993049 0.0005257208 2.533888e-02 6.257086e-02 6 144828790 144828855 66 + 1.461 1.694 0.794
ENSG00000152818 E081 59.5781397 0.0004325082 1.478041e-03 5.566254e-03 6 144835780 144835938 159 + 1.621 1.877 0.868
ENSG00000152818 E082 32.8575814 0.0005878329 5.626352e-03 1.762160e-02 6 144836301 144836372 72 + 1.363 1.642 0.958
ENSG00000152818 E083 50.7002501 0.0005085199 4.233511e-07 3.799657e-06 6 144836373 144836541 169 + 1.513 1.877 1.238
ENSG00000152818 E084 0.0000000       6 144836542 144836613 72 +      
ENSG00000152818 E085 0.4355181 0.6851817049 1.000000e+00 1.000000e+00 6 144837114 144837244 131 + 0.161 0.000 -10.018
ENSG00000152818 E086 0.1472490 0.0427700537 1.000000e+00   6 144839049 144839172 124 + 0.061 0.000 -8.440
ENSG00000152818 E087 28.3368487 0.0016856091 1.301660e-05 8.417669e-05 6 144839173 144839223 51 + 1.253 1.656 1.388
ENSG00000152818 E088 32.7919463 0.0056446292 8.319659e-04 3.373142e-03 6 144839224 144839284 61 + 1.336 1.678 1.172
ENSG00000152818 E089 44.4346079 0.0052062738 1.281939e-06 1.040351e-05 6 144840740 144840832 93 + 1.436 1.848 1.402
ENSG00000152818 E090 32.7182406 0.0016194866 1.472821e-09 2.115082e-08 6 144846805 144846827 23 + 1.271 1.763 1.690
ENSG00000152818 E091 355.0779200 0.0227082511 1.095063e-19 6.726862e-18 6 144850989 144853034 2046 + 2.196 2.898 2.340