ENSG00000149970

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000379510 ENSG00000149970 HEK293_OSMI2_2hA HEK293_TMG_2hB CNKSR2 protein_coding protein_coding 0.390144 0.3125087 0.3890563 0.05870698 0.01954485 0.3072542 0.03558176 0.10523918 0.04602430 0.05341431 0.04602430 -1.040507 0.11559583 0.42876667 0.1084333 -0.32033333 0.60911629 0.04857729 FALSE TRUE
ENST00000425654 ENSG00000149970 HEK293_OSMI2_2hA HEK293_TMG_2hB CNKSR2 protein_coding protein_coding 0.390144 0.3125087 0.3890563 0.05870698 0.01954485 0.3072542 0.13688855 0.00000000 0.20236523 0.00000000 0.08158901 4.408476 0.32427500 0.00000000 0.5134667 0.51346667 0.04857729 0.04857729 FALSE TRUE
ENST00000644075 ENSG00000149970 HEK293_OSMI2_2hA HEK293_TMG_2hB CNKSR2 protein_coding retained_intron 0.390144 0.3125087 0.3890563 0.05870698 0.01954485 0.3072542 0.01260959 0.01940524 0.00000000 0.01940524 0.00000000 -1.556073 0.05839167 0.04843333 0.0000000 -0.04843333 0.62267322 0.04857729 FALSE TRUE
ENST00000645245 ENSG00000149970 HEK293_OSMI2_2hA HEK293_TMG_2hB CNKSR2 protein_coding protein_coding 0.390144 0.3125087 0.3890563 0.05870698 0.01954485 0.3072542 0.05351926 0.06174854 0.04852286 0.03126391 0.04852286 -0.293949 0.14067917 0.16770000 0.1359000 -0.03180000 0.72656587 0.04857729 FALSE TRUE
ENST00000645539 ENSG00000149970 HEK293_OSMI2_2hA HEK293_TMG_2hB CNKSR2 protein_coding retained_intron 0.390144 0.3125087 0.3890563 0.05870698 0.01954485 0.3072542 0.01230179 0.00000000 0.04462784 0.00000000 0.04462784 2.449636 0.05105417 0.00000000 0.1250000 0.12500000 0.86133068 0.04857729 FALSE TRUE
ENST00000646690 ENSG00000149970 HEK293_OSMI2_2hA HEK293_TMG_2hB CNKSR2 protein_coding processed_transcript 0.390144 0.3125087 0.3890563 0.05870698 0.01954485 0.3072542 0.03132407 0.07335220 0.00000000 0.07335220 0.00000000 -3.059220 0.07065000 0.18303333 0.0000000 -0.18303333 0.67760554 0.04857729 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000149970 E001 0.0000000       X 21372801 21372899 99 +      
ENSG00000149970 E002 0.1472490 0.043063659 0.613289800   X 21374298 21374356 59 + 0.107 0.000 -9.933
ENSG00000149970 E003 0.3686942 0.028922348 0.848173054 0.90573563 X 21374357 21374383 27 + 0.107 0.140 0.440
ENSG00000149970 E004 0.3686942 0.028922348 0.848173054 0.90573563 X 21374384 21374417 34 + 0.107 0.140 0.440
ENSG00000149970 E005 0.3686942 0.028922348 0.848173054 0.90573563 X 21374418 21374420 3 + 0.107 0.140 0.440
ENSG00000149970 E006 0.3686942 0.028922348 0.848173054 0.90573563 X 21374421 21374421 1 + 0.107 0.140 0.440
ENSG00000149970 E007 0.6652806 0.017737048 0.209218492 0.33758179 X 21374422 21374447 26 + 0.107 0.329 2.021
ENSG00000149970 E008 0.6652806 0.017737048 0.209218492 0.33758179 X 21374448 21374455 8 + 0.107 0.329 2.021
ENSG00000149970 E009 0.6652806 0.017737048 0.209218492 0.33758179 X 21374456 21374467 12 + 0.107 0.329 2.021
ENSG00000149970 E010 0.8480291 0.015378759 0.008042203 0.02388529 X 21374468 21374510 43 + 0.000 0.461 14.349
ENSG00000149970 E011 0.9932018 0.013696863 0.047076683 0.10395988 X 21374511 21374607 97 + 0.107 0.461 2.757
ENSG00000149970 E012 0.5149111 0.020330220 0.429498802 0.57221905 X 21374608 21374609 2 + 0.107 0.245 1.438
ENSG00000149970 E013 1.1414950 0.012471119 0.022178246 0.05604229 X 21374610 21374670 61 + 0.107 0.514 3.019
ENSG00000149970 E014 1.6156211 0.008872685 0.094638288 0.18233624 X 21374671 21374728 58 + 0.265 0.562 1.658
ENSG00000149970 E015 1.4371390 0.009766049 0.479490073 0.61785701 X 21374729 21374742 14 + 0.326 0.461 0.758
ENSG00000149970 E016 1.2156938 0.011892578 0.726067787 0.81919459 X 21374743 21374752 10 + 0.326 0.400 0.434
ENSG00000149970 E017 1.2522254 0.011276840 0.290642883 0.43145837 X 21374753 21374768 16 + 0.265 0.461 1.172
ENSG00000149970 E018 1.3942776 0.010884807 0.962288436 0.98020613 X 21374769 21374793 25 + 0.380 0.400 0.114
ENSG00000149970 E019 1.0642801 0.012058604 0.414519560 0.55793200 X 21374794 21374799 6 + 0.380 0.245 -0.885
ENSG00000149970 E020 1.0642801 0.012058604 0.414519560 0.55793200 X 21374800 21374827 28 + 0.380 0.245 -0.885
ENSG00000149970 E021 1.2115291 0.011007596 0.276772629 0.41625427 X 21374828 21374832 5 + 0.428 0.245 -1.148
ENSG00000149970 E022 1.8006389 0.008348537 0.047351825 0.10445577 X 21374833 21374918 86 + 0.579 0.245 -1.885
ENSG00000149970 E023 1.6856552 0.008725723 0.266296578 0.40447284 X 21374919 21374961 43 + 0.510 0.330 -0.978
ENSG00000149970 E024 0.0000000       X 21423295 21426496 3202 +      
ENSG00000149970 E025 1.7682705 0.008557597 0.625940091 0.74196589 X 21426497 21426579 83 + 0.471 0.401 -0.370
ENSG00000149970 E026 1.5060377 0.011326382 0.474355657 0.61319531 X 21426580 21426611 32 + 0.326 0.462 0.760
ENSG00000149970 E027 1.3200669 0.013412497 0.714020150 0.81035294 X 21426612 21426660 49 + 0.326 0.401 0.438
ENSG00000149970 E028 0.0000000       X 21426661 21429776 3116 +      
ENSG00000149970 E029 2.6528087 0.045837779 0.292479720 0.43344811 X 21432612 21432814 203 + 0.639 0.461 -0.827
ENSG00000149970 E030 1.3565881 0.070279883 0.236161866 0.36973808 X 21440694 21440729 36 + 0.471 0.244 -1.373
ENSG00000149970 E031 1.0662427 0.440958074 0.827305773 0.89142644 X 21440730 21440781 52 + 0.379 0.242 -0.905
ENSG00000149970 E032 0.6255398 0.018554569 0.209258889 0.33763547 X 21440782 21441405 624 + 0.107 0.329 2.019
ENSG00000149970 E033 0.0000000       X 21468595 21468674 80 +      
ENSG00000149970 E034 0.0000000       X 21470734 21470765 32 +      
ENSG00000149970 E035 0.5910844 0.247485297 0.846053081 0.90428408 X 21470766 21470807 42 + 0.193 0.240 0.402
ENSG00000149970 E036 0.0000000       X 21470808 21470878 71 +      
ENSG00000149970 E037 1.5425577 0.177276713 0.764395216 0.84747869 X 21490459 21490578 120 + 0.379 0.455 0.410
ENSG00000149970 E038 0.2214452 0.041000232 0.384753583   X 21490579 21495691 5113 + 0.000 0.140 12.509
ENSG00000149970 E039 0.7310603 0.028821690 0.277407074 0.41696899 X 21497787 21497846 60 + 0.326 0.139 -1.565
ENSG00000149970 E040 0.0000000       X 21501475 21501519 45 +      
ENSG00000149970 E041 1.1823843 0.013389531 0.273370725 0.41239729 X 21501520 21501588 69 + 0.428 0.245 -1.150
ENSG00000149970 E042 0.0000000       X 21503244 21503332 89 +      
ENSG00000149970 E043 0.0000000       X 21503333 21504788 1456 +      
ENSG00000149970 E044 0.9191074 0.013630550 0.607858784 0.72775656 X 21504789 21506814 2026 + 0.326 0.245 -0.564
ENSG00000149970 E045 0.4439371 0.022206528 0.130944791 0.23545870 X 21516485 21516631 147 + 0.265 0.000 -13.891
ENSG00000149970 E046 1.3662642 0.014506832 0.723412935 0.81725779 X 21526867 21527000 134 + 0.326 0.401 0.439
ENSG00000149970 E047 1.2179710 0.109775979 0.974322814 0.98798111 X 21531856 21531858 3 + 0.326 0.333 0.044
ENSG00000149970 E048 2.9025795 0.029677960 0.765004706 0.84789323 X 21531859 21532067 209 + 0.546 0.608 0.279
ENSG00000149970 E049 0.0000000       X 21532068 21532195 128 +      
ENSG00000149970 E050 0.0000000       X 21537868 21538948 1081 +      
ENSG00000149970 E051 1.0621005 0.034796991 0.049328576 0.10797141 X 21561471 21561560 90 + 0.107 0.462 2.762
ENSG00000149970 E052 3.2398397 0.005188070 0.743281725 0.83195557 X 21563238 21563452 215 + 0.639 0.605 -0.147
ENSG00000149970 E053 1.8058358 0.008087812 0.180557780 0.30188361 X 21590572 21590620 49 + 0.546 0.329 -1.149
ENSG00000149970 E054 0.0000000       X 21590715 21590786 72 +      
ENSG00000149970 E055 1.3682414 0.010515968 0.526277298 0.65952462 X 21591022 21591033 12 + 0.428 0.329 -0.565
ENSG00000149970 E056 2.4054384 0.010293029 0.771547781 0.85255159 X 21591034 21591194 161 + 0.546 0.515 -0.148
ENSG00000149970 E057 0.1451727 0.043340646 0.613326866   X 21591195 21594170 2976 + 0.107 0.000 -12.720
ENSG00000149970 E058 0.0000000       X 21594171 21594870 700 +      
ENSG00000149970 E059 0.0000000       X 21594871 21594973 103 +      
ENSG00000149970 E060 0.9943357 0.013696863 0.611086096 0.73027577 X 21594974 21595047 74 + 0.326 0.245 -0.561
ENSG00000149970 E061 0.0000000       X 21595048 21595222 175 +      
ENSG00000149970 E062 0.0000000       X 21595223 21595323 101 +      
ENSG00000149970 E063 1.0695787 0.012198908 0.096950425 0.18582525 X 21595324 21595395 72 + 0.428 0.139 -2.148
ENSG00000149970 E064 1.6523458 0.009132097 0.011842710 0.03315571 X 21601282 21601349 68 + 0.579 0.139 -2.884
ENSG00000149970 E065 0.0000000       X 21606531 21606582 52 +      
ENSG00000149970 E066 2.9390015 0.005521713 0.118447909 0.21771621 X 21606779 21606879 101 + 0.692 0.461 -1.048
ENSG00000149970 E067 0.0000000       X 21607995 21608131 137 +      
ENSG00000149970 E068 5.8971172 0.002998100 0.076811078 0.15439066 X 21609071 21609617 547 + 0.918 0.713 -0.803
ENSG00000149970 E069 0.0000000       X 21637274 21637414 141 +      
ENSG00000149970 E070 0.4751703 0.021294982 0.429314744 0.57205429 X 21641533 21643395 1863 + 0.107 0.245 1.436
ENSG00000149970 E071 0.0000000       X 21643396 21645378 1983 +      
ENSG00000149970 E072 0.0000000       X 21645379 21645795 417 +      
ENSG00000149970 E073 0.0000000       X 21645796 21645899 104 +      
ENSG00000149970 E074 2.2123929 0.866685579 0.811030595 0.88015234 X 21648831 21649027 197 + 0.427 0.559 0.647
ENSG00000149970 E075 21.3418664 0.027459953 0.117053185 0.21574553 X 21652306 21654695 2390 + 1.257 1.429 0.598