ENSG00000149091

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000421244 ENSG00000149091 HEK293_OSMI2_2hA HEK293_TMG_2hB DGKZ protein_coding protein_coding 64.94069 100.3731 40.10315 6.267193 0.3851836 -1.323369 32.969903 54.59012 15.124485 5.194741 0.4619848 -1.8510646 0.4883708 0.54206667 0.3773333 -0.16473333 0.0007429977 1.269336e-12 FALSE TRUE
ENST00000456247 ENSG00000149091 HEK293_OSMI2_2hA HEK293_TMG_2hB DGKZ protein_coding protein_coding 64.94069 100.3731 40.10315 6.267193 0.3851836 -1.323369 6.044702 7.31415 5.657761 1.398015 0.2608372 -0.3698824 0.0917375 0.07193333 0.1411000 0.06916667 0.0012366279 1.269336e-12 FALSE TRUE
ENST00000529698 ENSG00000149091 HEK293_OSMI2_2hA HEK293_TMG_2hB DGKZ protein_coding retained_intron 64.94069 100.3731 40.10315 6.267193 0.3851836 -1.323369 9.333794 15.94044 6.040271 1.103095 0.5415448 -1.3985249 0.1381667 0.15883333 0.1504333 -0.00840000 0.8551531201 1.269336e-12 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000149091 E001 0.0000000       11 46332905 46333487 583 +      
ENSG00000149091 E002 0.0000000       11 46338598 46338890 293 +      
ENSG00000149091 E003 0.1817044 0.0396611541 1.000000e+00   11 46345267 46345402 136 + 0.000 0.077 8.854
ENSG00000149091 E004 0.1817044 0.0396611541 1.000000e+00   11 46345403 46345431 29 + 0.000 0.077 11.364
ENSG00000149091 E005 0.1817044 0.0396611541 1.000000e+00   11 46345432 46345433 2 + 0.000 0.077 11.364
ENSG00000149091 E006 0.1817044 0.0396611541 1.000000e+00   11 46345434 46345436 3 + 0.000 0.077 11.364
ENSG00000149091 E007 0.1817044 0.0396611541 1.000000e+00   11 46345437 46345585 149 + 0.000 0.077 11.364
ENSG00000149091 E008 3.9064857 0.0696328255 6.005766e-07 5.231387e-06 11 46347463 46347510 48 + 1.116 0.247 -3.974
ENSG00000149091 E009 4.2709161 0.0174046539 5.315298e-13 1.361871e-11 11 46347511 46347522 12 + 1.199 0.142 -5.264
ENSG00000149091 E010 7.3291808 0.0068310802 2.593097e-18 1.357078e-16 11 46347523 46347556 34 + 1.391 0.334 -4.350
ENSG00000149091 E011 13.9467728 0.0087555733 1.704544e-19 1.029393e-17 11 46347557 46347582 26 + 1.589 0.704 -3.222
ENSG00000149091 E012 14.1670852 0.0077354224 1.041864e-18 5.747760e-17 11 46347583 46347587 5 + 1.583 0.736 -3.069
ENSG00000149091 E013 159.2551627 0.0146384188 2.214297e-04 1.055591e-03 11 46347588 46347820 233 + 2.295 2.061 -0.781
ENSG00000149091 E014 0.1451727 0.0426437684 1.623924e-01   11 46361522 46361605 84 + 0.190 0.000 -14.138
ENSG00000149091 E015 0.0000000       11 46361606 46361606 1 +      
ENSG00000149091 E016 0.1817044 0.0396611541 1.000000e+00   11 46361607 46361706 100 + 0.000 0.077 11.364
ENSG00000149091 E017 0.1472490 0.0424169292 1.625626e-01   11 46361707 46361963 257 + 0.190 0.000 -14.142
ENSG00000149091 E018 7.0561484 0.0173596094 9.148582e-02 1.774518e-01 11 46366244 46366526 283 + 0.990 0.768 -0.854
ENSG00000149091 E019 7.8185527 0.1083028307 4.815485e-01 6.197771e-01 11 46366527 46366705 179 + 0.939 0.846 -0.352
ENSG00000149091 E020 10.6824289 0.1099052905 6.709493e-01 7.772940e-01 11 46366706 46366984 279 + 0.880 1.015 0.506
ENSG00000149091 E021 149.5973588 0.0042759414 2.732686e-03 9.470741e-03 11 46367291 46367314 24 + 2.192 2.066 -0.421
ENSG00000149091 E022 266.1482666 0.0027221993 2.678262e-04 1.248649e-03 11 46367315 46367399 85 + 2.435 2.318 -0.393
ENSG00000149091 E023 175.4874613 0.0014518971 1.487866e-03 5.597024e-03 11 46367652 46367654 3 + 2.246 2.143 -0.343
ENSG00000149091 E024 345.0161223 0.0002182443 2.431069e-06 1.856568e-05 11 46367655 46367747 93 + 2.531 2.434 -0.324
ENSG00000149091 E025 2.7646814 0.0055080234 1.854942e-02 4.834003e-02 11 46367748 46368001 254 + 0.774 0.406 -1.677
ENSG00000149091 E026 131.9700226 0.0043823594 1.696124e-02 4.485093e-02 11 46368002 46368004 3 + 2.119 2.017 -0.344
ENSG00000149091 E027 308.9539602 0.0003193660 9.337728e-04 3.732392e-03 11 46368005 46368079 75 + 2.463 2.390 -0.241
ENSG00000149091 E028 52.8934075 0.0004645521 5.121914e-50 3.120036e-47 11 46368080 46369363 1284 + 2.077 1.358 -2.441
ENSG00000149091 E029 15.4877706 0.0412609711 5.695775e-07 4.985434e-06 11 46369364 46369493 130 + 1.516 0.902 -2.188
ENSG00000149091 E030 345.6224673 0.0002083501 2.672352e-04 1.246232e-03 11 46369494 46369550 57 + 2.513 2.439 -0.247
ENSG00000149091 E031 8.8435877 0.0213919461 1.538090e-05 9.791387e-05 11 46369551 46369940 390 + 1.255 0.724 -1.986
ENSG00000149091 E032 378.6106280 0.0012247856 2.886782e-04 1.333780e-03 11 46369941 46370009 69 + 2.561 2.476 -0.284
ENSG00000149091 E033 329.9622566 0.0029669603 5.987770e-02 1.264072e-01 11 46371313 46371384 72 + 2.478 2.426 -0.174
ENSG00000149091 E034 344.1373612 0.0014060014 1.141964e-01 2.116618e-01 11 46371487 46371603 117 + 2.483 2.447 -0.117
ENSG00000149091 E035 238.7858004 0.0002233911 2.524452e-01 3.887974e-01 11 46371704 46371724 21 + 2.313 2.289 -0.079
ENSG00000149091 E036 289.2740537 0.0001511920 5.165424e-01 6.510901e-01 11 46371725 46371775 51 + 2.361 2.385 0.078
ENSG00000149091 E037 347.1989457 0.0001662136 2.901696e-01 4.309611e-01 11 46372075 46372170 96 + 2.436 2.467 0.105
ENSG00000149091 E038 381.7266870 0.0001489586 3.787445e-01 5.230463e-01 11 46372428 46372510 83 + 2.479 2.505 0.088
ENSG00000149091 E039 4.7167300 0.0034689684 5.259702e-02 1.137820e-01 11 46372511 46372616 106 + 0.880 0.612 -1.092
ENSG00000149091 E040 298.9725294 0.0011292688 1.323502e-01 2.373703e-01 11 46372617 46372677 61 + 2.355 2.407 0.174
ENSG00000149091 E041 2.7238078 0.0060446989 6.260574e-02 1.310361e-01 11 46372678 46372770 93 + 0.732 0.437 -1.338
ENSG00000149091 E042 349.0164709 0.0027117343 5.036284e-01 6.395947e-01 11 46372771 46372884 114 + 2.438 2.471 0.109
ENSG00000149091 E043 3.2064245 0.1142176763 6.342927e-01 7.487886e-01 11 46372885 46372897 13 + 0.633 0.528 -0.473
ENSG00000149091 E044 440.6354182 0.0005467383 1.860236e-01 3.087705e-01 11 46372961 46373101 141 + 2.580 2.558 -0.071
ENSG00000149091 E045 445.4916779 0.0001184903 7.927428e-05 4.244489e-04 11 46374157 46374235 79 + 2.619 2.550 -0.231
ENSG00000149091 E046 379.6667006 0.0001344159 3.854654e-03 1.273393e-02 11 46374399 46374428 30 + 2.539 2.485 -0.179
ENSG00000149091 E047 373.4431850 0.0001527879 1.684851e-01 2.861945e-01 11 46374429 46374454 26 + 2.507 2.485 -0.075
ENSG00000149091 E048 469.5795413 0.0001471717 3.248125e-02 7.676969e-02 11 46374604 46374666 63 + 2.617 2.583 -0.113
ENSG00000149091 E049 1.7338282 0.1652224890 9.549555e-03 2.765838e-02 11 46374667 46374765 99 + 0.732 0.199 -2.917
ENSG00000149091 E050 539.7491906 0.0001174700 8.783814e-01 9.258964e-01 11 46374766 46374839 74 + 2.646 2.651 0.015
ENSG00000149091 E051 541.1620473 0.0001348142 9.970821e-01 1.000000e+00 11 46374934 46375023 90 + 2.644 2.652 0.025
ENSG00000149091 E052 257.3204527 0.0002108454 2.416218e-02 6.014316e-02 11 46375024 46375045 22 + 2.273 2.342 0.229
ENSG00000149091 E053 585.1319031 0.0001410403 8.006877e-04 3.262245e-03 11 46375432 46375631 200 + 2.630 2.699 0.228
ENSG00000149091 E054 474.9301077 0.0001515494 3.161606e-03 1.074266e-02 11 46375851 46375951 101 + 2.541 2.608 0.222
ENSG00000149091 E055 399.0929773 0.0001426590 2.684939e-02 6.568107e-02 11 46376066 46376145 80 + 2.477 2.532 0.184
ENSG00000149091 E056 441.5844820 0.0001404914 1.509224e-02 4.069370e-02 11 46376328 46376397 70 + 2.517 2.575 0.192
ENSG00000149091 E057 0.5117019 0.0276132902 4.104752e-01 5.540630e-01 11 46376520 46376523 4 + 0.000 0.198 13.072
ENSG00000149091 E058 389.0260798 0.0018567287 5.641510e-02 1.204475e-01 11 46376524 46376564 41 + 2.455 2.524 0.231
ENSG00000149091 E059 5.6942407 0.0033965226 8.632243e-03 2.536733e-02 11 46376565 46377072 508 + 0.990 0.651 -1.336
ENSG00000149091 E060 375.6154586 0.0006515752 1.101949e-03 4.309593e-03 11 46377073 46377147 75 + 2.421 2.513 0.305
ENSG00000149091 E061 339.5794196 0.0014421247 4.000528e-05 2.305924e-04 11 46377148 46377212 65 + 2.343 2.478 0.448
ENSG00000149091 E062 422.9788950 0.0053720949 8.846658e-01 9.302610e-01 11 46377213 46377967 755 + 2.535 2.553 0.060
ENSG00000149091 E063 67.5230755 0.0262977955 6.912660e-02 1.419297e-01 11 46377968 46377969 2 + 1.607 1.797 0.644
ENSG00000149091 E064 103.9386645 0.0151873568 3.903549e-01 5.343321e-01 11 46377970 46378197 228 + 1.885 1.961 0.256
ENSG00000149091 E065 206.7029717 0.0001959186 2.809120e-05 1.682036e-04 11 46378198 46378229 32 + 2.126 2.263 0.456
ENSG00000149091 E066 20.0526295 0.0009223629 6.344094e-08 6.694160e-07 11 46378230 46378456 227 + 1.523 1.107 -1.458
ENSG00000149091 E067 288.1058538 0.0001582060 1.789526e-06 1.406840e-05 11 46378457 46378500 44 + 2.273 2.405 0.441
ENSG00000149091 E068 119.3055162 0.0002871425 1.375134e-28 2.040054e-26 11 46378501 46378893 393 + 2.255 1.885 -1.241
ENSG00000149091 E069 54.7146808 0.0004345371 3.567006e-09 4.772306e-08 11 46378894 46378990 97 + 1.872 1.583 -0.981
ENSG00000149091 E070 427.5316520 0.0004422280 3.844654e-07 3.477480e-06 11 46378991 46379111 121 + 2.448 2.575 0.421
ENSG00000149091 E071 310.1851659 0.0034577597 1.663633e-02 4.413532e-02 11 46379203 46379236 34 + 2.335 2.434 0.332
ENSG00000149091 E072 63.3211401 0.0024653585 3.272058e-20 2.138998e-18 11 46379237 46379453 217 + 2.036 1.580 -1.537
ENSG00000149091 E073 26.1256808 0.0007981653 6.946639e-07 5.968615e-06 11 46379454 46379468 15 + 1.596 1.255 -1.177
ENSG00000149091 E074 548.4946344 0.0013455546 2.471931e-05 1.501491e-04 11 46379469 46379568 100 + 2.565 2.683 0.396
ENSG00000149091 E075 340.5415728 0.0026327704 8.553937e-05 4.542064e-04 11 46379831 46379848 18 + 2.335 2.483 0.494
ENSG00000149091 E076 1061.2558920 0.0028149910 6.616700e-15 2.241620e-13 11 46379849 46380554 706 + 2.754 2.991 0.789