ENSG00000146282

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000369536 ENSG00000146282 HEK293_OSMI2_2hA HEK293_TMG_2hB RARS2 protein_coding protein_coding 17.91194 7.83553 28.28285 0.6856482 0.7462554 1.850495 0.4259945 1.1274336 0.000000 1.1274336 0.0000000 -6.829638 0.04595833 0.1605667 0.00000000 -0.16056667 6.856187e-01 1.148999e-13 FALSE TRUE
ENST00000687729 ENSG00000146282 HEK293_OSMI2_2hA HEK293_TMG_2hB RARS2 protein_coding protein_coding 17.91194 7.83553 28.28285 0.6856482 0.7462554 1.850495 1.6928127 0.0000000 3.241946 0.0000000 0.6882120 8.345160 0.06195833 0.0000000 0.11390000 0.11390000 5.060642e-11 1.148999e-13 FALSE TRUE
ENST00000692843 ENSG00000146282 HEK293_OSMI2_2hA HEK293_TMG_2hB RARS2 protein_coding nonsense_mediated_decay 17.91194 7.83553 28.28285 0.6856482 0.7462554 1.850495 1.0703125 0.0000000 3.708303 0.0000000 0.5879555 8.538501 0.03767083 0.0000000 0.13053333 0.13053333 1.148999e-13 1.148999e-13 TRUE TRUE
ENST00000693431 ENSG00000146282 HEK293_OSMI2_2hA HEK293_TMG_2hB RARS2 protein_coding protein_coding 17.91194 7.83553 28.28285 0.6856482 0.7462554 1.850495 1.2874444 0.9825296 2.309741 0.4931276 0.3786130 1.224782 0.07718333 0.1215333 0.08246667 -0.03906667 1.000000e+00 1.148999e-13 FALSE TRUE
MSTRG.28633.23 ENSG00000146282 HEK293_OSMI2_2hA HEK293_TMG_2hB RARS2 protein_coding   17.91194 7.83553 28.28285 0.6856482 0.7462554 1.850495 6.8691333 3.2141749 10.644810 0.6022544 1.1091725 1.724503 0.37129167 0.4043667 0.37626667 -0.02810000 8.834324e-01 1.148999e-13 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000146282 E001 0.1451727 0.0434156367 1.000000e+00   6 87513459 87513752 294 - 0.080 0.000 -8.213
ENSG00000146282 E002 0.1451727 0.0434156367 1.000000e+00   6 87513753 87513762 10 - 0.080 0.000 -10.583
ENSG00000146282 E003 0.8856962 0.0141691278 7.827272e-01 8.605129e-01 6 87513763 87513937 175 - 0.257 0.311 0.376
ENSG00000146282 E004 0.5890081 0.0202546803 3.629657e-01 5.073912e-01 6 87513938 87513945 8 - 0.147 0.311 1.375
ENSG00000146282 E005 0.7310603 0.0809850716 7.105776e-01 8.077186e-01 6 87513946 87513950 5 - 0.257 0.182 -0.626
ENSG00000146282 E006 0.8762330 0.1874422575 6.089668e-01 7.285509e-01 6 87513951 87513956 6 - 0.302 0.182 -0.953
ENSG00000146282 E007 1.0214057 0.2876055148 5.682187e-01 6.949024e-01 6 87513957 87513968 12 - 0.343 0.181 -1.220
ENSG00000146282 E008 12.0958378 0.0017547618 7.533598e-03 2.259972e-02 6 87513969 87514140 172 - 0.986 1.250 0.952
ENSG00000146282 E009 6.3074502 0.0026422940 1.775448e-02 4.660893e-02 6 87514141 87514146 6 - 0.719 1.019 1.156
ENSG00000146282 E010 10.6908758 0.0018476119 1.840269e-03 6.727260e-03 6 87514147 87514205 59 - 0.917 1.237 1.162
ENSG00000146282 E011 6.4065393 0.0027147003 2.431000e-02 6.045413e-02 6 87514206 87514212 7 - 0.736 1.019 1.089
ENSG00000146282 E012 12.6839234 0.0014568232 3.600123e-05 2.097981e-04 6 87514213 87514308 96 - 0.938 1.332 1.416
ENSG00000146282 E013 5.3938398 0.0736910910 1.831744e-02 4.782699e-02 6 87514309 87514343 35 - 0.583 1.006 1.694
ENSG00000146282 E014 7.6476781 0.0025125416 1.665021e-02 4.416966e-02 6 87514344 87514389 46 - 0.796 1.080 1.070
ENSG00000146282 E015 5.0731216 0.0054010729 1.376133e-01 2.447605e-01 6 87514390 87514396 7 - 0.684 0.893 0.830
ENSG00000146282 E016 13.1240682 0.0013606497 1.130486e-01 2.099843e-01 6 87514397 87514400 4 - 1.068 1.224 0.557
ENSG00000146282 E017 18.9865556 0.0012240271 5.646257e-06 3.971140e-05 6 87514401 87514410 10 - 1.118 1.483 1.279
ENSG00000146282 E018 18.9865556 0.0012240271 5.646257e-06 3.971140e-05 6 87514411 87514412 2 - 1.118 1.483 1.279
ENSG00000146282 E019 19.4294460 0.0028283548 3.372405e-06 2.496842e-05 6 87514413 87514417 5 - 1.118 1.498 1.330
ENSG00000146282 E020 21.1663936 0.0011714496 3.678990e-07 3.342349e-06 6 87514418 87514420 3 - 1.150 1.539 1.356
ENSG00000146282 E021 21.1663936 0.0011714496 3.678990e-07 3.342349e-06 6 87514421 87514421 1 - 1.150 1.539 1.356
ENSG00000146282 E022 20.9449483 0.0010228169 6.047681e-07 5.264509e-06 6 87514422 87514425 4 - 1.150 1.532 1.333
ENSG00000146282 E023 21.5371787 0.0009720976 9.618875e-07 8.008557e-06 6 87514426 87514427 2 - 1.168 1.539 1.291
ENSG00000146282 E024 22.5638048 0.0008581766 7.527783e-08 7.829349e-07 6 87514428 87514428 1 - 1.174 1.571 1.378
ENSG00000146282 E025 25.8143725 0.0007799652 1.334672e-05 8.612428e-05 6 87514429 87514431 3 - 1.278 1.583 1.052
ENSG00000146282 E026 49.9947947 0.0015430054 1.327014e-05 8.567298e-05 6 87514432 87514499 68 - 1.590 1.826 0.799
ENSG00000146282 E027 104.8615239 0.0080747770 1.029331e-02 2.948926e-02 6 87514957 87515020 64 - 1.946 2.090 0.484
ENSG00000146282 E028 2.4743266 0.0608064805 4.710120e-01 6.101821e-01 6 87515833 87515922 90 - 0.559 0.411 -0.735
ENSG00000146282 E029 1.2479471 0.6235184309 4.899141e-01 6.272750e-01 6 87515923 87515946 24 - 0.303 0.407 0.624
ENSG00000146282 E030 5.6337662 0.0028964591 4.876059e-01 6.252735e-01 6 87516112 87516805 694 - 0.767 0.863 0.378
ENSG00000146282 E031 127.6589312 0.0003160115 1.566781e-03 5.851823e-03 6 87516806 87516880 75 - 2.044 2.153 0.364
ENSG00000146282 E032 26.7772095 0.0007079626 2.035079e-02 5.222133e-02 6 87516881 87518045 1165 - 1.460 1.287 -0.601
ENSG00000146282 E033 8.8554370 0.0459207914 5.492451e-01 6.789966e-01 6 87518046 87518152 107 - 0.939 1.018 0.295
ENSG00000146282 E034 3.9518127 0.1566321407 7.495935e-01 8.365082e-01 6 87518153 87518168 16 - 0.648 0.713 0.271
ENSG00000146282 E035 80.5673580 0.0019814226 3.473307e-01 4.915382e-01 6 87518169 87518179 11 - 1.867 1.917 0.168
ENSG00000146282 E036 141.3816783 0.0031475467 4.471179e-02 9.967186e-02 6 87518180 87518264 85 - 2.096 2.182 0.288
ENSG00000146282 E037 11.6065277 0.0014616128 1.003147e-01 1.909578e-01 6 87518265 87518629 365 - 1.012 1.181 0.610
ENSG00000146282 E038 127.2629214 0.0002695624 9.476274e-02 1.825185e-01 6 87518630 87518682 53 - 2.061 2.121 0.201
ENSG00000146282 E039 110.0182681 0.0009639582 5.937478e-01 7.160735e-01 6 87518683 87518739 57 - 2.010 2.035 0.084
ENSG00000146282 E040 2.3204107 0.3693518154 5.481256e-01 6.780065e-01 6 87518740 87518823 84 - 0.562 0.313 -1.328
ENSG00000146282 E041 107.7447472 0.0002998072 9.544878e-01 9.754649e-01 6 87518824 87518891 68 - 2.007 2.014 0.022
ENSG00000146282 E042 9.8461852 0.0017652922 2.392658e-01 3.732527e-01 6 87518892 87519582 691 - 0.967 1.098 0.480
ENSG00000146282 E043 125.4978026 0.0004853630 7.194790e-01 8.143043e-01 6 87519583 87519707 125 - 2.079 2.071 -0.025
ENSG00000146282 E044 1.1729211 0.0156674796 3.005814e-01 4.422957e-01 6 87519708 87520179 472 - 0.382 0.183 -1.430
ENSG00000146282 E045 104.5913318 0.0003567182 2.590920e-01 3.964574e-01 6 87520180 87520252 73 - 2.010 1.972 -0.127
ENSG00000146282 E046 59.4085510 0.0007687184 5.299413e-03 1.674648e-02 6 87520253 87520256 4 - 1.795 1.654 -0.478
ENSG00000146282 E047 2.1715232 0.0084108965 5.822444e-01 7.066327e-01 6 87520257 87521463 1207 - 0.508 0.411 -0.495
ENSG00000146282 E048 95.1078033 0.0003162455 3.746862e-02 8.634372e-02 6 87521464 87521522 59 - 1.980 1.901 -0.264
ENSG00000146282 E049 67.1253635 0.0003994851 4.853987e-02 1.065814e-01 6 87521523 87521524 2 - 1.834 1.745 -0.301
ENSG00000146282 E050 1.1155605 0.0127216289 4.096118e-01 5.532168e-01 6 87521525 87522327 803 - 0.257 0.410 0.962
ENSG00000146282 E051 124.0890167 0.0003507166 6.114613e-03 1.890881e-02 6 87524557 87524652 96 - 2.096 2.003 -0.312
ENSG00000146282 E052 0.7675920 0.0163216088 5.678954e-01 6.946415e-01 6 87524653 87524674 22 - 0.206 0.311 0.793
ENSG00000146282 E053 1.5362161 0.1326532787 8.610940e-01 9.144199e-01 6 87524675 87525411 737 - 0.382 0.410 0.154
ENSG00000146282 E054 0.3030308 0.3598823062 7.411814e-01   6 87525579 87525879 301 - 0.148 0.000 -10.933
ENSG00000146282 E055 0.0000000       6 87525880 87525883 4 -      
ENSG00000146282 E056 0.4407149 0.0217681645 8.386658e-01 8.991563e-01 6 87527912 87528289 378 - 0.147 0.183 0.377
ENSG00000146282 E057 0.4460135 0.0278130974 3.675280e-01 5.119096e-01 6 87528290 87528899 610 - 0.206 0.000 -12.159
ENSG00000146282 E058 1.0361675 0.0117208450 3.954221e-01 5.392346e-01 6 87528900 87529541 642 - 0.345 0.183 -1.207
ENSG00000146282 E059 78.2892151 0.0054852452 5.755317e-01 7.011215e-01 6 87529542 87529585 44 - 1.878 1.844 -0.112
ENSG00000146282 E060 97.8884573 0.0003307390 6.325444e-03 1.946995e-02 6 87529586 87529648 63 - 1.995 1.890 -0.353
ENSG00000146282 E061 134.2877526 0.0002617113 1.524194e-03 5.715637e-03 6 87530784 87530942 159 - 2.131 2.027 -0.348
ENSG00000146282 E062 0.2903454 0.3039086461 7.267572e-01   6 87530943 87531060 118 - 0.147 0.000 -11.003
ENSG00000146282 E063 1.9187261 0.0581558940 9.136286e-02 1.772532e-01 6 87534735 87534858 124 - 0.303 0.621 1.655
ENSG00000146282 E064 76.2435066 0.0003577676 1.496882e-02 4.041530e-02 6 87541918 87541994 77 - 1.889 1.784 -0.355
ENSG00000146282 E065 1.5081140 0.1222754255 1.211186e-01 2.215357e-01 6 87541995 87542633 639 - 0.257 0.561 1.707
ENSG00000146282 E066 76.3966131 0.0003504650 1.460954e-03 5.510230e-03 6 87545616 87545699 84 - 1.898 1.757 -0.476
ENSG00000146282 E067 0.4804688 0.0222346680 8.320717e-01 8.947500e-01 6 87547634 87547727 94 - 0.147 0.183 0.379
ENSG00000146282 E068 0.2934659 0.0284322776 4.888783e-01   6 87548216 87548590 375 - 0.080 0.183 1.376
ENSG00000146282 E069 67.3880372 0.0004831496 2.247737e-04 1.069461e-03 6 87548591 87548646 56 - 1.853 1.674 -0.605
ENSG00000146282 E070 2.6592772 0.0054804164 2.514262e-01 3.876724e-01 6 87548647 87549542 896 - 0.480 0.669 0.863
ENSG00000146282 E071 1.2919663 0.0101722726 4.554199e-02 1.011914e-01 6 87551893 87553030 1138 - 0.206 0.559 2.114
ENSG00000146282 E072 1.2524159 0.0118398855 3.007287e-01 4.424712e-01 6 87553031 87553192 162 - 0.382 0.183 -1.427
ENSG00000146282 E073 2.1089658 0.0069077945 8.242924e-01 8.892973e-01 6 87553193 87555407 2215 - 0.450 0.491 0.210
ENSG00000146282 E074 106.2057874 0.0004519797 3.322147e-05 1.954082e-04 6 87555408 87555501 94 - 2.044 1.884 -0.539
ENSG00000146282 E075 65.6577414 0.0003749479 2.110188e-03 7.565935e-03 6 87555502 87555505 4 - 1.835 1.688 -0.497
ENSG00000146282 E076 0.7363589 0.0154994222 1.481206e-01 2.591233e-01 6 87555506 87555520 15 - 0.303 0.000 -12.875
ENSG00000146282 E077 120.3749114 0.0003274665 1.879986e-07 1.810849e-06 6 87562702 87562785 84 - 2.108 1.918 -0.636
ENSG00000146282 E078 112.3279878 0.0003802196 3.498325e-06 2.580992e-05 6 87564130 87564232 103 - 2.075 1.901 -0.583
ENSG00000146282 E079 0.0000000       6 87564544 87564547 4 -      
ENSG00000146282 E080 0.2903454 0.3039086461 7.267572e-01   6 87564548 87564662 115 - 0.147 0.000 -11.003
ENSG00000146282 E081 73.8145400 0.0003947699 1.093168e-02 3.099750e-02 6 87569517 87569590 74 - 1.878 1.765 -0.381
ENSG00000146282 E082 1.5415016 0.1291981363 6.531770e-01 7.637196e-01 6 87583464 87583561 98 - 0.417 0.312 -0.616
ENSG00000146282 E083 0.0000000       6 87583562 87583586 25 -      
ENSG00000146282 E084 0.8105550 0.0149514457 6.973275e-01 7.974658e-01 6 87585046 87585263 218 - 0.257 0.183 -0.620
ENSG00000146282 E085 35.7325995 0.0022616928 7.208338e-01 8.153652e-01 6 87589701 87589921 221 - 1.545 1.525 -0.070
ENSG00000146282 E086 33.6753469 0.0096512554 4.196786e-02 9.466453e-02 6 87589922 87590028 107 - 1.553 1.384 -0.582