ENSG00000146112

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000274853 ENSG00000146112 HEK293_OSMI2_2hA HEK293_TMG_2hB PPP1R18 protein_coding protein_coding 4.840531 7.885458 3.40745 0.3371417 0.2156282 -1.208103 1.2839639 1.4970514 1.6071331 0.37864760 0.1027654 0.1017098 0.3071292 0.1906000 0.47800000 0.287400000 0.009942719 0.009942719 FALSE TRUE
ENST00000399199 ENSG00000146112 HEK293_OSMI2_2hA HEK293_TMG_2hB PPP1R18 protein_coding protein_coding 4.840531 7.885458 3.40745 0.3371417 0.2156282 -1.208103 0.8203357 1.2534139 0.8279752 0.14710574 0.1336285 -0.5923478 0.1740792 0.1579000 0.24936667 0.091466667 0.346234645 0.009942719 FALSE TRUE
ENST00000615527 ENSG00000146112 HEK293_OSMI2_2hA HEK293_TMG_2hB PPP1R18 protein_coding protein_coding 4.840531 7.885458 3.40745 0.3371417 0.2156282 -1.208103 0.5305522 0.5898304 0.2832477 0.05893892 0.1049368 -1.0324351 0.1139500 0.0745000 0.08103333 0.006533333 0.957556116 0.009942719 FALSE TRUE
ENST00000615892 ENSG00000146112 HEK293_OSMI2_2hA HEK293_TMG_2hB PPP1R18 protein_coding protein_coding 4.840531 7.885458 3.40745 0.3371417 0.2156282 -1.208103 2.0525876 4.1650178 0.6089673 0.34444827 0.3251534 -2.7538473 0.3774833 0.5297667 0.16770000 -0.362066667 0.241743984 0.009942719 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000146112 E001 1.253168 0.2496563176 9.337038e-02 0.1803887349 6 30676389 30676390 2 - 0.001 0.427 10.477
ENSG00000146112 E002 173.394818 0.0123185034 3.241617e-02 0.0766608250 6 30676391 30677288 898 - 2.101 2.222 0.405
ENSG00000146112 E003 56.969166 0.0005271339 1.507438e-01 0.2626888470 6 30679179 30679389 211 - 1.643 1.732 0.303
ENSG00000146112 E004 33.827196 0.0092222619 1.178394e-01 0.2168367371 6 30684408 30684544 137 - 1.383 1.524 0.486
ENSG00000146112 E005 14.673150 0.0070139770 5.142088e-01 0.6489482082 6 30684545 30684562 18 - 1.083 1.166 0.299
ENSG00000146112 E006 205.227930 0.0002214712 5.751825e-01 0.7008647754 6 30684563 30685806 1244 - 2.259 2.262 0.012
ENSG00000146112 E007 60.677844 0.0005607288 8.596188e-05 0.0004561175 6 30685807 30686046 240 - 1.848 1.685 -0.549
ENSG00000146112 E008 61.906820 0.0081667218 1.767385e-03 0.0064959195 6 30686047 30687113 1067 - 1.862 1.698 -0.557
ENSG00000146112 E009 36.514686 0.0011066450 9.246124e-01 0.9565274036 6 30687114 30687895 782 - 1.510 1.520 0.034