ENSG00000145907

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000507878 ENSG00000145907 HEK293_OSMI2_2hA HEK293_TMG_2hB G3BP1 protein_coding processed_transcript 168.1596 89.05502 273.7386 28.55791 6.664719 1.619921 38.509896 14.399931 68.49093 3.948599 2.893395 2.2490601 0.2082125 0.16663333 0.25023333 0.0836 0.01350933 7.058934e-22 FALSE  
ENST00000520177 ENSG00000145907 HEK293_OSMI2_2hA HEK293_TMG_2hB G3BP1 protein_coding protein_coding 168.1596 89.05502 273.7386 28.55791 6.664719 1.619921 14.071848 9.248982 24.38829 3.865339 1.289540 1.3978544 0.0855625 0.09836667 0.08896667 -0.0094 0.86082610 7.058934e-22 FALSE  
ENST00000676634 ENSG00000145907 HEK293_OSMI2_2hA HEK293_TMG_2hB G3BP1 protein_coding processed_transcript 168.1596 89.05502 273.7386 28.55791 6.664719 1.619921 3.995629 5.255474 0.00000 5.255474 0.000000 -9.0404197 0.0304000 0.08620000 0.00000000 -0.0862 0.40099708 7.058934e-22 FALSE  
ENST00000676911 ENSG00000145907 HEK293_OSMI2_2hA HEK293_TMG_2hB G3BP1 protein_coding processed_transcript 168.1596 89.05502 273.7386 28.55791 6.664719 1.619921 20.195642 20.401107 30.20730 11.916923 2.864727 0.5660205 0.1467958 0.20480000 0.11050000 -0.0943 0.99454158 7.058934e-22    
ENST00000678070 ENSG00000145907 HEK293_OSMI2_2hA HEK293_TMG_2hB G3BP1 protein_coding protein_coding 168.1596 89.05502 273.7386 28.55791 6.664719 1.619921 62.266419 27.574224 97.49414 8.181573 2.855136 1.8216201 0.3560542 0.31423333 0.35613333 0.0419 0.35742890 7.058934e-22 FALSE  
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000145907 E001 0.1472490 4.678853e-02 1.000000e+00   5 151771045 151771083 39 + 0.076 0.000 -9.496
ENSG00000145907 E002 0.2987644 2.730813e-02 7.874811e-01   5 151771084 151771212 129 + 0.141 0.000 -11.792
ENSG00000145907 E003 0.0000000       5 151771213 151771243 31 +      
ENSG00000145907 E004 0.9641468 1.259022e-02 5.974102e-01 7.191676e-01 5 151771884 151771893 10 + 0.292 0.191 -0.801
ENSG00000145907 E005 1.2565685 1.003292e-02 3.481211e-01 4.923332e-01 5 151771894 151771905 12 + 0.370 0.191 -1.287
ENSG00000145907 E006 1.2565685 1.003292e-02 3.481211e-01 4.923332e-01 5 151771906 151771909 4 + 0.370 0.191 -1.287
ENSG00000145907 E007 1.2565685 1.003292e-02 3.481211e-01 4.923332e-01 5 151771910 151771912 3 + 0.370 0.191 -1.287
ENSG00000145907 E008 0.1451727 4.595443e-02 1.000000e+00   5 151771913 151771923 11 + 0.076 0.000 -10.816
ENSG00000145907 E009 0.2966881 2.726591e-02 7.896739e-01   5 151771924 151771927 4 + 0.141 0.000 -11.792
ENSG00000145907 E010 0.5870335 1.268890e-01 3.316162e-01 4.752602e-01 5 151771928 151771929 2 + 0.247 0.000 -12.840
ENSG00000145907 E011 4.7691629 3.399353e-03 7.777983e-01 8.570189e-01 5 151771930 151771937 8 + 0.718 0.775 0.229
ENSG00000145907 E012 4.7691629 3.399353e-03 7.777983e-01 8.570189e-01 5 151771938 151771938 1 + 0.718 0.775 0.229
ENSG00000145907 E013 12.7691101 1.458054e-03 9.034168e-01 9.425264e-01 5 151771939 151771946 8 + 1.105 1.135 0.111
ENSG00000145907 E014 14.9050572 1.222217e-03 6.940498e-01 7.949652e-01 5 151771947 151771951 5 + 1.160 1.215 0.196
ENSG00000145907 E015 15.0565726 1.160656e-03 7.389840e-01 8.287307e-01 5 151771952 151771952 1 + 1.166 1.215 0.176
ENSG00000145907 E016 15.2038217 1.143773e-03 7.849767e-01 8.621305e-01 5 151771953 151771953 1 + 1.171 1.215 0.156
ENSG00000145907 E017 15.7865888 1.129390e-03 9.709317e-01 9.858406e-01 5 151771954 151771955 2 + 1.193 1.215 0.078
ENSG00000145907 E018 41.9634532 4.906729e-03 5.656760e-03 1.770513e-02 5 151771956 151771964 9 + 1.648 1.462 -0.637
ENSG00000145907 E019 74.0508357 5.324335e-04 3.471872e-06 2.563672e-05 5 151771965 151771970 6 + 1.896 1.684 -0.714
ENSG00000145907 E020 95.4299000 2.853345e-04 8.311463e-05 4.427460e-04 5 151771971 151771974 4 + 1.991 1.844 -0.496
ENSG00000145907 E021 100.6679697 2.693589e-04 1.593246e-05 1.010904e-04 5 151771975 151771976 2 + 2.017 1.857 -0.536
ENSG00000145907 E022 267.8021658 1.606156e-04 1.464314e-07 1.440412e-06 5 151771977 151772032 56 + 2.429 2.314 -0.382
ENSG00000145907 E023 242.1255132 2.034339e-04 2.588769e-07 2.426716e-06 5 151772033 151772036 4 + 2.387 2.267 -0.400
ENSG00000145907 E024 2.2424998 8.234851e-03 2.181990e-01 3.482309e-01 5 151772037 151772040 4 + 0.544 0.323 -1.181
ENSG00000145907 E025 4.6605088 3.765303e-03 4.345631e-01 5.769039e-01 5 151772273 151772503 231 + 0.685 0.813 0.519
ENSG00000145907 E026 2.4388365 7.479567e-02 3.047452e-01 4.467778e-01 5 151772504 151772534 31 + 0.436 0.635 0.939
ENSG00000145907 E027 1.8842838 1.243888e-01 1.979342e-01 3.236482e-01 5 151772535 151772567 33 + 0.333 0.580 1.282
ENSG00000145907 E028 4.2155380 5.724930e-03 3.711106e-02 8.568444e-02 5 151772568 151772656 89 + 0.567 0.881 1.297
ENSG00000145907 E029 3.5375985 4.432546e-02 1.387968e-01 2.464375e-01 5 151772657 151772668 12 + 0.544 0.809 1.125
ENSG00000145907 E030 0.0000000       5 151774605 151774709 105 +      
ENSG00000145907 E031 0.1472490 4.678853e-02 1.000000e+00   5 151777615 151777734 120 + 0.076 0.000 -10.817
ENSG00000145907 E032 255.2128988 1.587850e-04 2.611876e-05 1.576286e-04 5 151786572 151786602 31 + 2.402 2.312 -0.299
ENSG00000145907 E033 265.1064222 1.894960e-04 2.241470e-07 2.128306e-06 5 151786603 151786620 18 + 2.425 2.311 -0.381
ENSG00000145907 E034 235.4636474 5.789010e-04 3.144007e-05 1.861321e-04 5 151786621 151786623 3 + 2.370 2.267 -0.347
ENSG00000145907 E035 464.4623098 1.995519e-04 1.407564e-05 9.032850e-05 5 151786624 151786715 92 + 2.655 2.587 -0.226
ENSG00000145907 E036 0.0000000       5 151786716 151786863 148 +      
ENSG00000145907 E037 0.1482932 4.115975e-02 1.624065e-01   5 151786864 151786867 4 + 0.000 0.190 13.161
ENSG00000145907 E038 0.2934659 2.733245e-02 4.475576e-01   5 151786868 151786985 118 + 0.076 0.190 1.518
ENSG00000145907 E039 3.3363114 1.704283e-01 6.327539e-02 1.321661e-01 5 151786986 151787764 779 + 0.467 0.817 1.527
ENSG00000145907 E040 0.4439371 2.157266e-02 4.478480e-01 5.892070e-01 5 151787765 151787794 30 + 0.198 0.000 -12.367
ENSG00000145907 E041 0.2955422 2.732017e-02 4.482862e-01   5 151787795 151787868 74 + 0.076 0.190 1.517
ENSG00000145907 E042 0.4482035 3.371889e-02 4.515915e-01 5.925397e-01 5 151789464 151789493 30 + 0.198 0.000 -12.386
ENSG00000145907 E043 0.0000000       5 151789631 151789660 30 +      
ENSG00000145907 E044 0.0000000       5 151789707 151789715 9 +      
ENSG00000145907 E045 0.0000000       5 151789716 151789745 30 +      
ENSG00000145907 E046 0.3729606 4.867528e-02 4.386349e-01 5.805126e-01 5 151789912 151789943 32 + 0.076 0.191 1.524
ENSG00000145907 E047 1.2480713 2.695106e-01 7.721349e-03 2.307922e-02 5 151790147 151790322 176 + 0.076 0.638 4.117
ENSG00000145907 E048 504.6278192 1.799502e-04 1.850447e-04 8.993833e-04 5 151790323 151790404 82 + 2.687 2.636 -0.172
ENSG00000145907 E049 663.8457106 1.048896e-04 3.750185e-03 1.243979e-02 5 151790889 151790990 102 + 2.800 2.771 -0.094
ENSG00000145907 E050 488.5476022 1.154539e-04 1.389244e-03 5.271355e-03 5 151790991 151791020 30 + 2.670 2.630 -0.136
ENSG00000145907 E051 445.1204846 1.447476e-04 6.716673e-03 2.048578e-02 5 151791021 151791062 42 + 2.628 2.593 -0.117
ENSG00000145907 E052 2.0067707 5.327244e-02 3.886208e-01 5.327013e-01 5 151791063 151792044 982 + 0.494 0.323 -0.940
ENSG00000145907 E053 0.4815130 2.176816e-02 1.482456e-01 2.592943e-01 5 151792045 151792201 157 + 0.076 0.322 2.518
ENSG00000145907 E054 3.0321016 7.373904e-02 3.035432e-01 4.454670e-01 5 151792202 151793824 1623 + 0.630 0.423 -0.987
ENSG00000145907 E055 409.6299307 1.693686e-04 1.370889e-02 3.755978e-02 5 151794159 151794202 44 + 2.592 2.559 -0.109
ENSG00000145907 E056 299.9599449 5.979401e-04 3.718448e-01 5.163256e-01 5 151794203 151794222 20 + 2.450 2.442 -0.027
ENSG00000145907 E057 328.9019305 1.338340e-03 1.971265e-01 3.226408e-01 5 151794223 151794249 27 + 2.494 2.470 -0.081
ENSG00000145907 E058 3.5806539 4.369589e-03 2.469466e-02 6.125391e-02 5 151794250 151795478 1229 + 0.718 0.323 -1.940
ENSG00000145907 E059 479.5962218 3.035043e-03 1.980125e-01 3.237329e-01 5 151795479 151795528 50 + 2.660 2.617 -0.143
ENSG00000145907 E060 521.7350906 1.252628e-03 5.078910e-03 1.614620e-02 5 151795529 151795575 47 + 2.703 2.639 -0.213
ENSG00000145907 E061 2.6185809 5.994323e-03 7.717034e-01 8.526226e-01 5 151795576 151796313 738 + 0.544 0.506 -0.181
ENSG00000145907 E062 1.1018308 3.144479e-02 9.051337e-01 9.436213e-01 5 151796314 151796545 232 + 0.292 0.323 0.199
ENSG00000145907 E063 1.8038612 7.455330e-03 1.162037e-01 2.145637e-01 5 151796546 151797196 651 + 0.493 0.191 -1.940
ENSG00000145907 E064 1.4339298 1.291008e-02 1.400321e-02 3.823399e-02 5 151797197 151797226 30 + 0.198 0.634 2.517
ENSG00000145907 E065 602.0553124 1.576986e-03 5.850451e-02 1.240765e-01 5 151797227 151797288 62 + 2.759 2.717 -0.139
ENSG00000145907 E066 796.6644490 2.000232e-03 1.848631e-01 3.073109e-01 5 151797289 151797418 130 + 2.876 2.846 -0.099
ENSG00000145907 E067 402.3768902 1.458427e-03 1.830400e-01 3.049974e-01 5 151797419 151797428 10 + 2.580 2.557 -0.078
ENSG00000145907 E068 0.8930711 5.292965e-02 5.987277e-01 7.202724e-01 5 151798676 151799211 536 + 0.293 0.190 -0.808
ENSG00000145907 E069 371.9306405 1.949350e-03 5.339016e-01 6.660262e-01 5 151799212 151799226 15 + 2.541 2.535 -0.021
ENSG00000145907 E070 653.3400555 1.193873e-03 7.802135e-01 8.587312e-01 5 151799227 151799313 87 + 2.782 2.785 0.010
ENSG00000145907 E071 1.0457324 2.812201e-02 8.957872e-02 1.744797e-01 5 151799314 151799863 550 + 0.370 0.000 -13.597
ENSG00000145907 E072 3.5984450 4.574552e-02 4.237112e-01 5.667574e-01 5 151799864 151799888 25 + 0.590 0.731 0.603
ENSG00000145907 E073 449.0194739 1.292321e-03 4.768767e-01 6.154901e-01 5 151799889 151799898 10 + 2.623 2.614 -0.030
ENSG00000145907 E074 816.5330533 4.270922e-04 3.352110e-01 4.789856e-01 5 151799899 151800000 102 + 2.882 2.878 -0.010
ENSG00000145907 E075 1.3360778 9.466511e-03 4.087669e-02 9.266332e-02 5 151800001 151800043 43 + 0.436 0.000 -13.924
ENSG00000145907 E076 2.6960019 5.417852e-03 2.147669e-02 5.459795e-02 5 151800044 151800217 174 + 0.630 0.191 -2.568
ENSG00000145907 E077 612.3740546 2.558507e-04 3.566964e-02 8.294064e-02 5 151800218 151800261 44 + 2.762 2.741 -0.068
ENSG00000145907 E078 691.7544687 9.266362e-05 3.279076e-02 7.738730e-02 5 151800262 151800346 85 + 2.814 2.800 -0.048
ENSG00000145907 E079 2.0273947 9.084445e-03 7.425039e-01 8.313831e-01 5 151800347 151800458 112 + 0.436 0.506 0.349
ENSG00000145907 E080 714.0882658 1.037622e-03 7.477768e-01 8.351998e-01 5 151800760 151800869 110 + 2.815 2.837 0.070
ENSG00000145907 E081 3.6222650 4.510578e-03 2.040342e-01 3.312253e-01 5 151803538 151803636 99 + 0.567 0.775 0.881
ENSG00000145907 E082 3.1815621 3.580636e-02 5.054785e-02 1.101313e-01 5 151803637 151803861 225 + 0.466 0.811 1.511
ENSG00000145907 E083 3.0461710 1.989532e-01 7.407907e-01 8.301243e-01 5 151803862 151803884 23 + 0.569 0.580 0.052
ENSG00000145907 E084 706.0766739 1.264724e-03 1.562168e-02 4.189229e-02 5 151803885 151803996 112 + 2.795 2.865 0.233
ENSG00000145907 E085 726.4551589 5.102673e-04 3.063299e-08 3.441864e-07 5 151803997 151804141 145 + 2.794 2.910 0.384
ENSG00000145907 E086 358.5768651 2.167435e-04 5.566916e-06 3.920432e-05 5 151804142 151804162 21 + 2.491 2.604 0.379
ENSG00000145907 E087 417.8819416 4.124227e-04 6.234190e-06 4.342729e-05 5 151804163 151804203 41 + 2.556 2.668 0.374
ENSG00000145907 E088 677.1707836 1.514971e-04 1.021787e-11 2.123692e-10 5 151804204 151804405 202 + 2.762 2.885 0.409
ENSG00000145907 E089 334.0565264 3.638215e-03 1.472616e-03 5.547920e-03 5 151804406 151804446 41 + 2.448 2.585 0.456
ENSG00000145907 E090 1702.0247009 2.583287e-03 2.106454e-23 1.948542e-21 5 151804447 151805490 1044 + 3.106 3.352 0.818
ENSG00000145907 E091 1772.1815719 5.260516e-03 1.525686e-07 1.495585e-06 5 151805491 151811009 5519 + 3.262 3.055 -0.688
ENSG00000145907 E092 302.3653714 8.602691e-03 1.089840e-13 3.081135e-12 5 151811010 151812785 1776 + 2.298 2.674 1.256
ENSG00000145907 E093 0.9996463 1.420332e-02 2.275161e-01 3.594361e-01 5 151812884 151812911 28 + 0.198 0.424 1.520