ENSG00000142798

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000374695 ENSG00000142798 HEK293_OSMI2_2hA HEK293_TMG_2hB HSPG2 protein_coding protein_coding 2.956254 3.367258 2.483637 0.4885079 0.3642215 -0.4376007 1.3169373 1.0432347 1.4289899 0.09520731 0.05803880 0.4502295 0.4872292 0.3153667 0.5989667 0.28360000 4.626626e-02 2.63419e-06 FALSE TRUE
ENST00000486901 ENSG00000142798 HEK293_OSMI2_2hA HEK293_TMG_2hB HSPG2 protein_coding retained_intron 2.956254 3.367258 2.483637 0.4885079 0.3642215 -0.4376007 0.8202957 1.7411870 0.2595566 0.22632766 0.06479439 -2.6996729 0.2504833 0.5281000 0.1047667 -0.42333333 2.634190e-06 2.63419e-06 FALSE TRUE
ENST00000635682 ENSG00000142798 HEK293_OSMI2_2hA HEK293_TMG_2hB HSPG2 protein_coding protein_coding 2.956254 3.367258 2.483637 0.4885079 0.3642215 -0.4376007 0.5997864 0.4586195 0.5507479 0.24382519 0.28715260 0.2589353 0.1728208 0.1198333 0.1935000 0.07366667 9.231420e-01 2.63419e-06 FALSE FALSE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000142798 E001 0.2965864 0.2875242113 2.802388e-01   1 21822244 21822244 1 - 0.000 0.212 10.357
ENSG00000142798 E002 78.1759343 0.0249659611 3.415485e-08 3.805301e-07 1 21822245 21823300 1056 - 1.556 2.059 1.699
ENSG00000142798 E003 24.6178484 0.0008509406 5.955642e-10 9.210437e-09 1 21823301 21823488 188 - 1.071 1.557 1.703
ENSG00000142798 E004 26.8039490 0.0009066598 3.353592e-11 6.405806e-10 1 21823616 21823719 104 - 1.083 1.591 1.777
ENSG00000142798 E005 1.2671776 0.0229736087 2.477711e-02 6.141743e-02 1 21823720 21824120 401 - 0.517 0.122 -2.814
ENSG00000142798 E006 31.6310471 0.0007265926 2.235746e-08 2.582497e-07 1 21824121 21824204 84 - 1.247 1.633 1.332
ENSG00000142798 E007 0.5806908 0.8979822583 3.078070e-01 4.500443e-01 1 21824205 21824266 62 - 0.360 0.000 -15.034
ENSG00000142798 E008 32.0415294 0.0009635970 7.790754e-04 3.183982e-03 1 21824306 21824376 71 - 1.365 1.595 0.789
ENSG00000142798 E009 31.8336725 0.0071589207 1.470032e-03 5.539505e-03 1 21824537 21824615 79 - 1.347 1.602 0.877
ENSG00000142798 E010 30.0181010 0.0012211316 2.203809e-04 1.051041e-03 1 21824704 21824779 76 - 1.320 1.580 0.896
ENSG00000142798 E011 23.7684909 0.0008470579 3.538306e-05 2.066279e-04 1 21827863 21827919 57 - 1.177 1.499 1.121
ENSG00000142798 E012 31.4298399 0.0108208584 1.262072e-04 6.421781e-04 1 21828030 21828152 123 - 1.285 1.621 1.157
ENSG00000142798 E013 29.6173358 0.0016576237 1.500858e-06 1.200275e-05 1 21828255 21828426 172 - 1.247 1.595 1.206
ENSG00000142798 E014 29.5521735 0.0165692131 3.278527e-04 1.492257e-03 1 21828835 21829079 245 - 1.239 1.598 1.242
ENSG00000142798 E015 26.2461487 0.0143416825 3.523499e-03 1.179441e-02 1 21829383 21829604 222 - 1.254 1.530 0.955
ENSG00000142798 E016 3.3035390 0.0169515406 8.895133e-01 9.333771e-01 1 21829605 21829992 388 - 0.595 0.630 0.152
ENSG00000142798 E017 18.1822926 0.0219550117 7.698497e-02 1.546639e-01 1 21829993 21830091 99 - 1.157 1.354 0.692
ENSG00000142798 E018 3.1073525 0.0065065328 4.471080e-01 5.885329e-01 1 21830092 21830713 622 - 0.662 0.556 -0.467
ENSG00000142798 E019 14.1190561 0.0013905715 3.119045e-01 4.544283e-01 1 21830982 21831090 109 - 1.105 1.211 0.378
ENSG00000142798 E020 17.6221727 0.0015000927 7.829275e-01 8.606134e-01 1 21831215 21831324 110 - 1.238 1.276 0.131
ENSG00000142798 E021 21.0648937 0.0009159137 1.485405e-01 2.596879e-01 1 21831463 21831562 100 - 1.389 1.297 -0.320
ENSG00000142798 E022 25.7941772 0.0007890197 9.469642e-01 9.706979e-01 1 21831652 21831796 145 - 1.412 1.431 0.066
ENSG00000142798 E023 19.7406781 0.0010330072 4.901033e-01 6.274613e-01 1 21832495 21832606 112 - 1.270 1.338 0.237
ENSG00000142798 E024 0.0000000       1 21832875 21832892 18 -      
ENSG00000142798 E025 0.2965864 0.2875242113 2.802388e-01   1 21833116 21833267 152 - 0.000 0.212 13.598
ENSG00000142798 E026 20.5541381 0.0009747254 3.486182e-01 4.928523e-01 1 21833268 21833384 117 - 1.278 1.363 0.298
ENSG00000142798 E027 20.0024508 0.0157717767 2.938010e-01 4.348476e-01 1 21833467 21833614 148 - 1.359 1.278 -0.284
ENSG00000142798 E028 17.2231045 0.0100489301 8.499727e-01 9.069161e-01 1 21833816 21833925 110 - 1.254 1.254 -0.002
ENSG00000142798 E029 28.1857962 0.0007800692 6.708402e-01 7.771929e-01 1 21834679 21834945 267 - 1.433 1.476 0.146
ENSG00000142798 E030 0.0000000       1 21834946 21835408 463 -      
ENSG00000142798 E031 0.0000000       1 21835409 21835539 131 -      
ENSG00000142798 E032 17.0997135 0.0011287499 8.546723e-01 9.101007e-01 1 21835540 21835637 98 - 1.238 1.268 0.103
ENSG00000142798 E033 20.9937838 0.0009497952 7.603462e-01 8.444987e-01 1 21836802 21837006 205 - 1.314 1.351 0.130
ENSG00000142798 E034 22.5665159 0.0008472937 4.796283e-01 6.179972e-01 1 21838825 21839085 261 - 1.327 1.393 0.228
ENSG00000142798 E035 17.8946418 0.0178246165 6.572964e-01 7.666671e-01 1 21839371 21839550 180 - 1.292 1.265 -0.094
ENSG00000142798 E036 18.0929036 0.0332971853 9.091615e-01 9.463062e-01 1 21839822 21840017 196 - 1.262 1.295 0.117
ENSG00000142798 E037 16.7964569 0.0183765994 7.447814e-01 8.329787e-01 1 21841101 21841285 185 - 1.221 1.269 0.166
ENSG00000142798 E038 15.0441428 0.0141453714 9.577306e-01 9.774976e-01 1 21841539 21841673 135 - 1.186 1.198 0.041
ENSG00000142798 E039 12.7164794 0.0013787492 3.933208e-01 5.372196e-01 1 21842002 21842142 141 - 1.158 1.092 -0.235
ENSG00000142798 E040 12.2237726 0.0138734808 2.430758e-01 3.778086e-01 1 21842239 21842380 142 - 1.177 1.068 -0.393
ENSG00000142798 E041 14.4726282 0.0274719188 6.926719e-02 1.421487e-01 1 21842770 21842921 152 - 1.285 1.091 -0.692
ENSG00000142798 E042 15.1342817 0.0224098573 1.089668e-01 2.040086e-01 1 21843297 21843438 142 - 1.278 1.118 -0.568
ENSG00000142798 E043 13.3288667 0.0147123621 8.708570e-01 9.209943e-01 1 21844148 21844299 152 - 1.138 1.140 0.009
ENSG00000142798 E044 8.0155502 0.0180997398 5.125213e-01 6.474379e-01 1 21846108 21846195 88 - 0.877 0.979 0.385
ENSG00000142798 E045 5.8775454 0.0045238404 5.373952e-01 6.689614e-01 1 21846196 21846255 60 - 0.857 0.792 -0.254
ENSG00000142798 E046 13.3148817 0.0013916903 4.257433e-02 9.577025e-02 1 21846448 21846599 152 - 1.239 1.068 -0.608
ENSG00000142798 E047 12.9979334 0.0238050164 1.293683e-01 2.332982e-01 1 21847354 21847492 139 - 1.230 1.067 -0.584
ENSG00000142798 E048 13.8540218 0.0043251746 8.753571e-03 2.566862e-02 1 21847689 21847840 152 - 1.285 1.056 -0.818
ENSG00000142798 E049 0.0000000       1 21847841 21847957 117 -      
ENSG00000142798 E050 14.2145190 0.0016866230 1.781034e-01 2.987634e-01 1 21847958 21848093 136 - 1.230 1.125 -0.375
ENSG00000142798 E051 13.0067652 0.0014304595 1.990184e-01 3.249876e-01 1 21848643 21848794 152 - 1.196 1.092 -0.371
ENSG00000142798 E052 11.2277614 0.0016179162 6.865609e-02 1.411362e-01 1 21848893 21849031 139 - 1.168 1.004 -0.593
ENSG00000142798 E053 11.0502336 0.0053967820 3.356738e-01 4.794686e-01 1 21850041 21850192 152 - 1.127 1.043 -0.303
ENSG00000142798 E054 13.6927585 0.0015717707 2.969569e-01 4.382423e-01 1 21850363 21850498 136 - 1.204 1.125 -0.283
ENSG00000142798 E055 0.3030308 0.3989702871 2.800191e-01   1 21851311 21851545 235 - 0.219 0.000 -14.417
ENSG00000142798 E056 8.5498464 0.0361523192 3.636357e-01 5.080660e-01 1 21851546 21851590 45 - 1.033 0.914 -0.442
ENSG00000142798 E057 10.5292639 0.0021401053 8.758000e-01 9.242398e-01 1 21851591 21851697 107 - 1.046 1.044 -0.006
ENSG00000142798 E058 9.1497928 0.0021183019 8.288385e-02 1.640611e-01 1 21851791 21851926 136 - 1.083 0.911 -0.635
ENSG00000142798 E059 8.8732803 0.0106840180 4.381904e-02 9.805681e-02 1 21852088 21852233 146 - 1.094 0.875 -0.814
ENSG00000142798 E060 8.5587825 0.0587992358 1.382081e-01 2.455941e-01 1 21852700 21852832 133 - 1.059 0.868 -0.713
ENSG00000142798 E061 5.0290368 0.1130419542 2.664384e-01 4.046202e-01 1 21852919 21852963 45 - 0.856 0.674 -0.734
ENSG00000142798 E062 7.3814087 0.0025445681 1.451298e-01 2.550147e-01 1 21852964 21853070 107 - 0.992 0.835 -0.592
ENSG00000142798 E063 11.1307722 0.0016152460 3.784854e-01 5.227798e-01 1 21854193 21854343 151 - 1.116 1.044 -0.263
ENSG00000142798 E064 8.9058410 0.0139504434 5.524508e-01 6.817372e-01 1 21854611 21854765 155 - 1.019 0.961 -0.217
ENSG00000142798 E065 8.6983274 0.0102988705 2.516402e-01 3.879055e-01 1 21854848 21854983 136 - 1.033 0.913 -0.448
ENSG00000142798 E066 8.0484472 0.0395697577 6.193090e-01 7.367573e-01 1 21855304 21855446 143 - 0.913 0.988 0.282
ENSG00000142798 E067 5.4936609 0.0390334515 7.356264e-01 8.263477e-01 1 21855523 21855675 153 - 0.837 0.791 -0.181
ENSG00000142798 E068 4.7177767 0.0034237353 7.716163e-01 8.525964e-01 1 21855787 21855912 126 - 0.771 0.744 -0.108
ENSG00000142798 E069 8.2343314 0.0120112568 3.695331e-01 5.139349e-01 1 21857015 21857195 181 - 1.006 0.912 -0.350
ENSG00000142798 E070 6.7690929 0.0029555484 1.306970e-01 2.351213e-01 1 21857285 21857385 101 - 0.962 0.792 -0.650
ENSG00000142798 E071 7.9847826 0.0028618319 9.913223e-01 9.986481e-01 1 21859566 21859676 111 - 0.930 0.944 0.055
ENSG00000142798 E072 9.7792082 0.0178405407 8.845024e-02 1.727541e-01 1 21859835 21860002 168 - 1.116 0.930 -0.684
ENSG00000142798 E073 5.4770776 0.0463819787 3.296195e-01 4.731395e-01 1 21860177 21860235 59 - 0.877 0.745 -0.518
ENSG00000142798 E074 7.0569968 0.0774475469 7.421715e-01 8.311491e-01 1 21861757 21861843 87 - 0.929 0.890 -0.148
ENSG00000142798 E075 6.8546448 0.0051247840 2.903401e-02 7.007562e-02 1 21861988 21862115 128 - 1.020 0.768 -0.961
ENSG00000142798 E076 6.0182664 0.0028361617 8.383612e-02 1.655548e-01 1 21864100 21864213 114 - 0.946 0.744 -0.786
ENSG00000142798 E077 7.4878741 0.0022547717 2.081854e-02 5.320912e-02 1 21864843 21865073 231 - 1.046 0.792 -0.962
ENSG00000142798 E078 5.9712510 0.0047111454 1.170440e-01 2.157347e-01 1 21865285 21865365 81 - 0.930 0.744 -0.724
ENSG00000142798 E079 6.8288331 0.0486619068 2.004601e-01 3.267885e-01 1 21865717 21865809 93 - 0.978 0.795 -0.698
ENSG00000142798 E080 0.0000000       1 21868885 21868968 84 -      
ENSG00000142798 E081 0.0000000       1 21869466 21869663 198 -      
ENSG00000142798 E082 0.1817044 0.0393771970 5.059993e-01   1 21870213 21870314 102 - 0.000 0.122 12.988
ENSG00000142798 E083 0.0000000       1 21870834 21870872 39 -      
ENSG00000142798 E084 13.2397588 0.0352484332 6.752174e-03 2.057948e-02 1 21872186 21872377 192 - 1.300 0.975 -1.164
ENSG00000142798 E085 8.1909367 0.0023079381 5.012705e-04 2.164673e-03 1 21872620 21872760 141 - 1.127 0.744 -1.449
ENSG00000142798 E086 0.0000000       1 21872859 21872996 138 -      
ENSG00000142798 E087 4.6718211 0.1112178160 3.828842e-01 5.270610e-01 1 21872997 21873091 95 - 0.816 0.691 -0.505
ENSG00000142798 E088 3.1302945 0.2590825619 4.645448e-01 6.042624e-01 1 21873375 21873424 50 - 0.663 0.563 -0.439
ENSG00000142798 E089 4.4117548 0.0187072667 1.303170e-01 2.346003e-01 1 21873925 21874011 87 - 0.837 0.628 -0.857
ENSG00000142798 E090 4.5266353 0.0049638227 3.978346e-01 5.415848e-01 1 21874406 21874477 72 - 0.794 0.690 -0.423
ENSG00000142798 E091 4.4148738 0.0454971395 5.466391e-01 6.767842e-01 1 21874478 21874533 56 - 0.771 0.691 -0.324
ENSG00000142798 E092 7.1880881 0.0024585588 4.666174e-01 6.061636e-01 1 21874616 21874729 114 - 0.946 0.875 -0.271
ENSG00000142798 E093 4.4599121 0.0036626937 7.684855e-01 8.503930e-01 1 21874891 21875002 112 - 0.746 0.718 -0.115
ENSG00000142798 E094 0.3268771 0.0274424043 9.764695e-01   1 21875003 21875208 206 - 0.123 0.122 -0.008
ENSG00000142798 E095 4.1395682 0.0124747511 6.574901e-02 1.362870e-01 1 21875629 21875747 119 - 0.816 0.557 -1.090
ENSG00000142798 E096 4.9457707 0.0031762331 4.751039e-03 1.523580e-02 1 21875863 21876042 180 - 0.930 0.556 -1.531
ENSG00000142798 E097 5.0917747 0.0036627963 2.005647e-03 7.244030e-03 1 21876229 21876405 177 - 0.962 0.556 -1.653
ENSG00000142798 E098 7.1879507 0.0023434753 7.898579e-02 1.578924e-01 1 21876512 21876652 141 - 1.006 0.814 -0.728
ENSG00000142798 E099 0.1482932 0.0420496111 5.068585e-01   1 21877514 21877539 26 - 0.000 0.122 12.981
ENSG00000142798 E100 6.0862074 0.0532635503 2.505504e-01 3.865909e-01 1 21878186 21878253 68 - 0.929 0.768 -0.625
ENSG00000142798 E101 0.0000000       1 21878254 21878432 179 -      
ENSG00000142798 E102 5.6247799 0.0094234907 2.096110e-01 3.380885e-01 1 21878433 21878491 59 - 0.895 0.744 -0.594
ENSG00000142798 E103 7.1340318 0.0024196658 6.792787e-04 2.823267e-03 1 21878577 21878663 87 - 1.083 0.690 -1.511
ENSG00000142798 E104 8.9452904 0.0026356779 1.468577e-03 5.535124e-03 1 21878994 21879121 128 - 1.148 0.814 -1.243
ENSG00000142798 E105 5.4885950 0.0275089219 2.906175e-02 7.012688e-02 1 21880107 21880254 148 - 0.962 0.657 -1.203
ENSG00000142798 E106 4.7232934 0.0035081687 7.422298e-03 2.231743e-02 1 21880363 21880559 197 - 0.913 0.556 -1.467
ENSG00000142798 E107 6.4638971 0.0077592209 5.686423e-01 6.952668e-01 1 21880656 21880835 180 - 0.895 0.836 -0.227
ENSG00000142798 E108 6.5854390 0.0110672495 1.070964e-01 2.012507e-01 1 21881339 21881502 164 - 0.962 0.770 -0.739
ENSG00000142798 E109 7.5372606 0.0021418601 9.673479e-08 9.847986e-07 1 21884528 21884674 147 - 1.168 0.515 -2.593
ENSG00000142798 E110 8.2999303 0.0041838882 1.313444e-04 6.648177e-04 1 21884767 21884918 152 - 1.148 0.718 -1.630
ENSG00000142798 E111 7.4884422 0.0170027971 8.096538e-03 2.402520e-02 1 21885013 21885157 145 - 1.071 0.744 -1.244
ENSG00000142798 E112 7.4530841 0.0366216812 1.304946e-03 4.993397e-03 1 21885320 21885451 132 - 1.117 0.659 -1.763
ENSG00000142798 E113 3.3321508 0.0118317864 2.033559e-03 7.330586e-03 1 21887215 21887232 18 - 0.837 0.361 -2.180
ENSG00000142798 E114 2.4055547 0.0059405563 8.309032e-03 2.456609e-02 1 21887233 21887234 2 - 0.720 0.295 -2.125
ENSG00000142798 E115 5.0145692 0.0032137543 9.521944e-03 2.759275e-02 1 21887235 21887334 100 - 0.930 0.593 -1.362
ENSG00000142798 E116 5.8043959 0.0029599505 7.610128e-02 1.532677e-01 1 21887420 21887674 255 - 0.930 0.718 -0.831
ENSG00000142798 E117 4.8444930 0.0033263752 1.354901e-03 5.159331e-03 1 21887938 21888066 129 - 0.946 0.515 -1.786
ENSG00000142798 E118 0.0000000       1 21888668 21888718 51 -      
ENSG00000142798 E119 0.0000000       1 21889816 21889980 165 -      
ENSG00000142798 E120 7.3689191 0.0131916329 2.102153e-05 1.297389e-04 1 21889981 21890141 161 - 1.137 0.593 -2.123
ENSG00000142798 E121 5.5566123 0.0370497656 1.375946e-03 5.228122e-03 1 21890427 21890485 59 - 1.005 0.518 -1.991
ENSG00000142798 E122 6.6303687 0.0026011409 3.759815e-04 1.681267e-03 1 21890585 21890694 110 - 1.059 0.628 -1.686
ENSG00000142798 E123 4.0642287 0.0038705330 9.434008e-04 3.766001e-03 1 21895922 21895966 45 - 0.895 0.419 -2.078
ENSG00000142798 E124 4.5663406 0.0042040667 3.663188e-03 1.219177e-02 1 21896175 21896310 136 - 0.913 0.515 -1.660
ENSG00000142798 E125 1.5038371 0.0150270025 4.896205e-02 1.073106e-01 1 21937155 21937310 156 - 0.558 0.217 -2.009