ENSG00000141556

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000355528 ENSG00000141556 HEK293_OSMI2_2hA HEK293_TMG_2hB TBCD protein_coding protein_coding 107.5893 166.4923 48.80711 12.1007 1.358935 -1.770083 7.49989 19.07047 1.227496 1.700893 0.6165618 -3.9466007 0.05460417 0.11696667 0.02506667 -0.09190000 0.3155672275 1.863077e-16 FALSE TRUE
ENST00000574422 ENSG00000141556 HEK293_OSMI2_2hA HEK293_TMG_2hB TBCD protein_coding protein_coding 107.5893 166.4923 48.80711 12.1007 1.358935 -1.770083 10.23579 12.71965 4.559179 6.620736 0.9331844 -1.4781863 0.09902917 0.07166667 0.09253333 0.02086667 0.8441073283 1.863077e-16 FALSE FALSE
ENST00000574818 ENSG00000141556 HEK293_OSMI2_2hA HEK293_TMG_2hB TBCD protein_coding retained_intron 107.5893 166.4923 48.80711 12.1007 1.358935 -1.770083 27.17177 45.17981 11.439394 2.642245 0.3195834 -1.9807263 0.24468750 0.27296667 0.23446667 -0.03850000 0.3543022081 1.863077e-16 FALSE FALSE
ENST00000575132 ENSG00000141556 HEK293_OSMI2_2hA HEK293_TMG_2hB TBCD protein_coding retained_intron 107.5893 166.4923 48.80711 12.1007 1.358935 -1.770083 12.58448 23.50370 4.072954 2.059621 0.2843823 -2.5258161 0.10524167 0.14223333 0.08370000 -0.05853333 0.0180944399 1.863077e-16   FALSE
ENST00000576996 ENSG00000141556 HEK293_OSMI2_2hA HEK293_TMG_2hB TBCD protein_coding protein_coding 107.5893 166.4923 48.80711 12.1007 1.358935 -1.770083 12.67144 21.48885 4.160095 2.367185 0.5260071 -2.3661071 0.10962917 0.12840000 0.08496667 -0.04343333 0.0436200058 1.863077e-16 FALSE FALSE
ENST00000683009 ENSG00000141556 HEK293_OSMI2_2hA HEK293_TMG_2hB TBCD protein_coding processed_transcript 107.5893 166.4923 48.80711 12.1007 1.358935 -1.770083 17.41184 16.94252 12.989096 4.147573 0.4365145 -0.3830889 0.19275417 0.09953333 0.26660000 0.16706667 0.0003456804 1.863077e-16 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000141556 E001 11.4936237 0.0241053194 8.707811e-01 9.209594e-01 17 82752042 82752047 6 + 0.938 0.962 0.091
ENSG00000141556 E002 10.9410376 0.0565021636 5.282758e-01 6.611937e-01 17 82752048 82752050 3 + 1.031 0.925 -0.394
ENSG00000141556 E003 12.1902417 0.0262021757 3.634127e-01 5.078191e-01 17 82752051 82752056 6 + 1.084 0.962 -0.450
ENSG00000141556 E004 11.7129951 0.0248319925 4.092507e-01 5.528491e-01 17 82752057 82752057 1 + 1.059 0.947 -0.412
ENSG00000141556 E005 12.2581082 0.0379912765 5.207645e-01 6.547122e-01 17 82752058 82752061 4 + 1.059 0.971 -0.323
ENSG00000141556 E006 11.3046472 0.0591967407 5.142888e-01 6.490087e-01 17 82752062 82752063 2 + 1.031 0.937 -0.349
ENSG00000141556 E007 10.9014977 0.0527840508 4.462762e-01 5.877788e-01 17 82752064 82752064 1 + 1.031 0.920 -0.414
ENSG00000141556 E008 11.4968485 0.0342382083 2.770963e-01 4.166143e-01 17 82752065 82752067 3 + 1.084 0.933 -0.559
ENSG00000141556 E009 13.0717838 0.0282123942 2.601838e-01 3.976623e-01 17 82752068 82752073 6 + 1.132 0.984 -0.538
ENSG00000141556 E010 99.8274000 0.0137438032 7.104938e-09 9.002202e-08 17 82752074 82752157 84 + 2.164 1.771 -1.321
ENSG00000141556 E011 104.9390082 0.0159939179 1.286507e-09 1.868913e-08 17 82752158 82752193 36 + 2.211 1.781 -1.443
ENSG00000141556 E012 195.6687094 0.0150030643 6.507161e-09 8.310942e-08 17 82752194 82752377 184 + 2.442 2.067 -1.252
ENSG00000141556 E013 0.0000000       17 82752575 82752612 38 +      
ENSG00000141556 E014 0.0000000       17 82752613 82752754 142 +      
ENSG00000141556 E015 0.1482932 0.0414490988 1.000000e+00   17 82752755 82752948 194 + 0.000 0.061 10.037
ENSG00000141556 E016 140.7038600 0.0097833776 2.669038e-05 1.607200e-04 17 82756165 82756215 51 + 2.207 1.960 -0.829
ENSG00000141556 E017 0.6664265 0.0176664806 1.485140e-01 2.596552e-01 17 82759511 82759600 90 + 0.379 0.115 -2.196
ENSG00000141556 E018 1.2973640 0.0128298901 4.991225e-01 6.354697e-01 17 82763041 82763964 924 + 0.379 0.246 -0.872
ENSG00000141556 E019 291.2449158 0.0037524964 2.332979e-07 2.208554e-06 17 82763965 82764062 98 + 2.483 2.285 -0.662
ENSG00000141556 E020 387.9249970 0.0039885759 1.056724e-07 1.068952e-06 17 82766267 82766368 102 + 2.605 2.409 -0.654
ENSG00000141556 E021 0.1482932 0.0414490988 1.000000e+00   17 82767462 82767584 123 + 0.000 0.061 10.037
ENSG00000141556 E022 501.3722807 0.0012175697 7.263874e-07 6.217499e-06 17 82768420 82768566 147 + 2.661 2.533 -0.425
ENSG00000141556 E023 0.6632043 0.0188182585 7.151313e-01 8.111533e-01 17 82768567 82769861 1295 + 0.230 0.163 -0.613
ENSG00000141556 E024 325.4155457 0.0003954634 1.570634e-07 1.536148e-06 17 82772452 82772507 56 + 2.481 2.343 -0.461
ENSG00000141556 E025 0.0000000       17 82780839 82780922 84 +      
ENSG00000141556 E026 435.1861861 0.0022295440 6.372217e-03 1.959036e-02 17 82781589 82781721 133 + 2.566 2.481 -0.284
ENSG00000141556 E027 278.0632824 0.0018495105 2.709700e-02 6.619017e-02 17 82797757 82797802 46 + 2.363 2.287 -0.254
ENSG00000141556 E028 424.5207658 0.0038169875 4.352974e-02 9.751763e-02 17 82800864 82800996 133 + 2.546 2.472 -0.244
ENSG00000141556 E029 0.0000000       17 82805258 82805447 190 +      
ENSG00000141556 E030 458.7592490 0.0006617580 1.748332e-07 1.695068e-06 17 82805875 82806011 137 + 2.621 2.495 -0.419
ENSG00000141556 E031 353.8150104 0.0010332147 1.531504e-05 9.753551e-05 17 82807608 82807668 61 + 2.507 2.385 -0.407
ENSG00000141556 E032 365.0658135 0.0001684629 3.565417e-04 1.605557e-03 17 82809708 82809782 75 + 2.493 2.404 -0.295
ENSG00000141556 E033 375.6375695 0.0001840503 3.196151e-03 1.084467e-02 17 82814840 82814934 95 + 2.493 2.420 -0.244
ENSG00000141556 E034 0.1482932 0.0414490988 1.000000e+00   17 82814935 82815406 472 + 0.000 0.061 10.037
ENSG00000141556 E035 0.0000000       17 82830496 82830717 222 +      
ENSG00000141556 E036 0.0000000       17 82845584 82846121 538 +      
ENSG00000141556 E037 0.0000000       17 82858519 82858595 77 +      
ENSG00000141556 E038 0.0000000       17 82858596 82858667 72 +      
ENSG00000141556 E039 0.0000000       17 82860394 82860449 56 +      
ENSG00000141556 E040 0.0000000       17 82864291 82864427 137 +      
ENSG00000141556 E041 0.0000000       17 82866985 82867125 141 +      
ENSG00000141556 E042 0.0000000       17 82867818 82868032 215 +      
ENSG00000141556 E043 441.4606839 0.0001441618 3.752425e-05 2.177825e-04 17 82870224 82870380 157 + 2.577 2.484 -0.309
ENSG00000141556 E044 0.1515154 0.0422485770 9.047521e-02   17 82881494 82881723 230 + 0.230 0.000 -13.310
ENSG00000141556 E045 208.7902468 0.0002062716 6.978523e-03 2.116719e-02 17 82884145 82884151 7 + 2.249 2.161 -0.294
ENSG00000141556 E046 317.8595484 0.0001697264 3.725932e-06 2.732422e-05 17 82884152 82884202 51 + 2.457 2.337 -0.400
ENSG00000141556 E047 0.1817044 0.0392570699 1.000000e+00   17 82884801 82884936 136 + 0.000 0.061 10.065
ENSG00000141556 E048 0.1817044 0.0392570699 1.000000e+00   17 82886084 82886284 201 + 0.000 0.061 10.065
ENSG00000141556 E049 279.3807755 0.0001580946 3.737821e-03 1.240442e-02 17 82889668 82889697 30 + 2.370 2.288 -0.274
ENSG00000141556 E050 3.6515341 0.0050010563 3.529336e-03 1.181081e-02 17 82890697 82891713 1017 + 0.901 0.451 -1.933
ENSG00000141556 E051 1.5092443 0.0112135411 6.778391e-01 7.824480e-01 17 82893064 82893107 44 + 0.230 0.315 0.614
ENSG00000141556 E052 1.8080087 0.0091090446 3.622218e-01 5.066211e-01 17 82893108 82893196 89 + 0.490 0.315 -0.972
ENSG00000141556 E053 406.0439505 0.0005456586 5.032145e-03 1.601984e-02 17 82893547 82893632 86 + 2.523 2.451 -0.239
ENSG00000141556 E054 0.2214452 0.0381379152 1.000000e+00   17 82895701 82895824 124 + 0.000 0.062 10.081
ENSG00000141556 E055 0.0000000       17 82895825 82895967 143 +      
ENSG00000141556 E056 0.0000000       17 82895968 82895990 23 +      
ENSG00000141556 E057 0.0000000       17 82899456 82899500 45 +      
ENSG00000141556 E058 1.3598197 0.0122164891 6.248553e-01 7.410834e-01 17 82900542 82900650 109 + 0.379 0.281 -0.612
ENSG00000141556 E059 378.3894681 0.0001482254 3.311668e-02 7.803958e-02 17 82900651 82900731 81 + 2.478 2.424 -0.179
ENSG00000141556 E060 1.7650587 0.0084350823 8.724281e-01 9.219551e-01 17 82902393 82903404 1012 + 0.379 0.346 -0.196
ENSG00000141556 E061 385.4931447 0.0008702263 5.403720e-01 6.715243e-01 17 82903405 82903478 74 + 2.429 2.445 0.053
ENSG00000141556 E062 514.5767507 0.0003760012 9.373971e-01 9.646333e-01 17 82905936 82906053 118 + 2.569 2.566 -0.012
ENSG00000141556 E063 10.3103306 0.0055273159 1.143594e-11 2.357202e-10 17 82906175 82906557 383 + 1.428 0.708 -2.652
ENSG00000141556 E064 363.6715576 0.0005137716 5.608268e-01 6.887398e-01 17 82907761 82907821 61 + 2.404 2.418 0.047
ENSG00000141556 E065 9.3628595 0.0304488384 3.068210e-10 4.984676e-09 17 82908091 82908276 186 + 1.439 0.622 -3.057
ENSG00000141556 E066 4.0115723 0.1191632416 2.606562e-04 1.219333e-03 17 82908277 82908296 20 + 1.108 0.349 -3.264
ENSG00000141556 E067 7.6620423 0.0449340411 7.426158e-12 1.578617e-10 17 82908297 82908437 141 + 1.439 0.429 -3.974
ENSG00000141556 E068 24.8292716 0.0007940542 4.062523e-21 2.964687e-19 17 82908438 82909284 847 + 1.754 1.083 -2.329
ENSG00000141556 E069 258.8019759 0.0002949598 8.568975e-01 9.115622e-01 17 82909285 82909307 23 + 2.265 2.269 0.011
ENSG00000141556 E070 332.6640204 0.0001493388 1.367834e-01 2.436054e-01 17 82911758 82911789 32 + 2.345 2.382 0.126
ENSG00000141556 E071 0.4031496 0.0246012720 1.000000e+00 1.000000e+00 17 82913011 82913149 139 + 0.000 0.115 11.268
ENSG00000141556 E072 3.6515326 0.0047214247 3.251996e-02 7.684348e-02 17 82913340 82914153 814 + 0.818 0.474 -1.495
ENSG00000141556 E073 2.0960779 0.0495147614 7.882169e-03 2.348326e-02 17 82920192 82920459 268 + 0.769 0.281 -2.419
ENSG00000141556 E074 2.4680910 0.1182276072 6.853949e-01 7.881585e-01 17 82920460 82920555 96 + 0.490 0.411 -0.409
ENSG00000141556 E075 384.2669563 0.0001558813 3.944636e-02 9.000787e-02 17 82920556 82920618 63 + 2.396 2.446 0.166
ENSG00000141556 E076 5.6442841 0.0028421546 1.003240e-05 6.665059e-05 17 82920619 82921500 882 + 1.132 0.554 -2.280
ENSG00000141556 E077 429.4725136 0.0001799361 2.250141e-02 5.672422e-02 17 82921501 82921577 77 + 2.441 2.494 0.176
ENSG00000141556 E078 438.8195360 0.0001765139 5.004974e-04 2.162024e-03 17 82923652 82923733 82 + 2.426 2.508 0.274
ENSG00000141556 E079 0.1817044 0.0392570699 1.000000e+00   17 82924139 82924231 93 + 0.000 0.061 10.065
ENSG00000141556 E080 568.3196279 0.0001524580 1.613167e-02 4.302543e-02 17 82924939 82925057 119 + 2.569 2.618 0.161
ENSG00000141556 E081 626.1786350 0.0006550970 2.935944e-01 4.346729e-01 17 82926400 82926491 92 + 2.634 2.657 0.076
ENSG00000141556 E082 1.7013583 0.3467156415 4.323757e-01 5.748196e-01 17 82926866 82927185 320 + 0.490 0.331 -0.867
ENSG00000141556 E083 754.5620968 0.0005255766 3.776310e-03 1.251549e-02 17 82927186 82927323 138 + 2.683 2.742 0.197
ENSG00000141556 E084 540.8056031 0.0001484110 2.031109e-06 1.577839e-05 17 82927905 82927988 84 + 2.500 2.602 0.342
ENSG00000141556 E085 352.7916987 0.0002685771 3.690930e-06 2.708956e-05 17 82929113 82929137 25 + 2.291 2.418 0.425
ENSG00000141556 E086 646.2706676 0.0001414653 6.897476e-11 1.250780e-09 17 82929138 82929271 134 + 2.552 2.684 0.439
ENSG00000141556 E087 654.8054417 0.0025463788 1.349741e-05 8.699500e-05 17 82929362 82929500 139 + 2.554 2.692 0.462
ENSG00000141556 E088 27.3097093 0.0007184795 5.565090e-12 1.207110e-10 17 82929501 82929865 365 + 1.685 1.193 -1.699
ENSG00000141556 E089 27.9802192 0.0013512751 2.077728e-14 6.525519e-13 17 82929866 82930243 378 + 1.726 1.188 -1.856
ENSG00000141556 E090 18.0832897 0.0224926967 6.352736e-07 5.505017e-06 17 82930244 82930457 214 + 1.547 1.005 -1.906
ENSG00000141556 E091 11.4138877 0.0259816901 2.624301e-04 1.226510e-03 17 82930458 82930521 64 + 1.312 0.851 -1.679
ENSG00000141556 E092 619.2035873 0.0008000020 5.485767e-09 7.108496e-08 17 82930522 82930643 122 + 2.525 2.668 0.476
ENSG00000141556 E093 0.2998086 0.0297175226 2.702949e-01   17 82931949 82932139 191 + 0.230 0.061 -2.200
ENSG00000141556 E094 324.1702929 0.0008702546 5.856796e-07 5.114087e-06 17 82932658 82932686 29 + 2.228 2.387 0.532
ENSG00000141556 E095 399.4186547 0.0004899860 1.596215e-08 1.894607e-07 17 82932687 82932735 49 + 2.321 2.477 0.520
ENSG00000141556 E096 7.2643569 0.0048044531 1.268675e-03 4.872913e-03 17 82932736 82932855 120 + 1.109 0.695 -1.583
ENSG00000141556 E097 5.9583688 0.0027135363 2.615906e-01 3.992423e-01 17 82937216 82937270 55 + 0.862 0.695 -0.666
ENSG00000141556 E098 554.9384968 0.0007809450 7.232193e-12 1.541016e-10 17 82937271 82937360 90 + 2.447 2.624 0.590
ENSG00000141556 E099 3.1126630 0.0065399870 8.084580e-04 3.288882e-03 17 82937361 82937569 209 + 0.901 0.374 -2.349
ENSG00000141556 E100 2.7752891 0.0305379887 2.585682e-02 6.364659e-02 17 82937570 82937845 276 + 0.769 0.376 -1.827
ENSG00000141556 E101 1.7348698 0.0082216643 3.610841e-01 5.054628e-01 17 82937846 82937959 114 + 0.490 0.315 -0.974
ENSG00000141556 E102 584.4646276 0.0022066563 5.599044e-13 1.430123e-11 17 82938049 82938136 88 + 2.420 2.653 0.776
ENSG00000141556 E103 8.3093891 0.0793240778 9.126279e-01 9.486309e-01 17 82939042 82939366 325 + 0.818 0.857 0.153
ENSG00000141556 E104 457.5312989 0.0038301362 2.334935e-07 2.210295e-06 17 82939367 82939400 34 + 2.339 2.544 0.681
ENSG00000141556 E105 634.7702516 0.0019114801 4.629874e-10 7.289252e-09 17 82939401 82939476 76 + 2.497 2.684 0.623
ENSG00000141556 E106 2.3990165 0.0072308779 2.453463e-01 3.804389e-01 17 82941148 82941398 251 + 0.230 0.473 1.502
ENSG00000141556 E107 714.6995779 0.0023361358 2.247083e-11 4.420593e-10 17 82941399 82941483 85 + 2.530 2.738 0.690
ENSG00000141556 E108 17.4337012 0.0010740229 2.017534e-02 5.184977e-02 17 82941484 82942448 965 + 1.312 1.088 -0.795
ENSG00000141556 E109 737.5276886 0.0027877952 1.369981e-06 1.104561e-05 17 82942449 82945914 3466 + 2.592 2.746 0.515
ENSG00000141556 E110 45.3214339 0.0004899084 1.637191e-62 1.803261e-59 17 82949442 82954729 5288 + 2.104 1.225 -2.996