ENSG00000141551

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000314028 ENSG00000141551 HEK293_OSMI2_2hA HEK293_TMG_2hB CSNK1D protein_coding protein_coding 117.0606 148.1328 94.75065 9.691 1.98299 -0.6446285 49.448887 72.744947 36.722840 3.7080968 0.2354178 -0.9859749 0.41481667 0.49300000 0.38793333 -0.10506667 1.110470e-02 9.988863e-06 FALSE TRUE
ENST00000392334 ENSG00000141551 HEK293_OSMI2_2hA HEK293_TMG_2hB CSNK1D protein_coding protein_coding 117.0606 148.1328 94.75065 9.691 1.98299 -0.6446285 17.378472 26.766583 12.043166 3.4957306 0.3868555 -1.1515597 0.14541667 0.18196667 0.12733333 -0.05463333 2.458640e-01 9.988863e-06 FALSE TRUE
ENST00000579316 ENSG00000141551 HEK293_OSMI2_2hA HEK293_TMG_2hB CSNK1D protein_coding retained_intron 117.0606 148.1328 94.75065 9.691 1.98299 -0.6446285 5.905593 5.002081 5.892464 0.8994437 0.1597418 0.2359077 0.05205417 0.03330000 0.06226667 0.02896667 4.707101e-03 9.988863e-06 FALSE TRUE
ENST00000584377 ENSG00000141551 HEK293_OSMI2_2hA HEK293_TMG_2hB CSNK1D protein_coding retained_intron 117.0606 148.1328 94.75065 9.691 1.98299 -0.6446285 11.884713 9.831051 11.812934 1.3727067 0.6621009 0.2647038 0.10709583 0.06576667 0.12450000 0.05873333 9.988863e-06 9.988863e-06 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000141551 E001 4.2511524 4.224543e-03 4.712414e-02 1.040468e-01 17 82239023 82239168 146 - 0.859 0.587 -1.121
ENSG00000141551 E002 25.3550603 4.300368e-03 6.270386e-01 7.429007e-01 17 82239727 82239913 187 - 1.349 1.396 0.163
ENSG00000141551 E003 32.0032219 3.456461e-03 6.767927e-02 1.394960e-01 17 82239914 82240062 149 - 1.382 1.524 0.488
ENSG00000141551 E004 8.1703678 2.306066e-03 2.850928e-03 9.826428e-03 17 82242667 82242672 6 - 0.614 1.022 1.616
ENSG00000141551 E005 3482.8247183 2.576576e-03 5.477869e-06 3.864330e-05 17 82242673 82244300 1628 - 3.425 3.539 0.377
ENSG00000141551 E006 303.7465724 1.648592e-04 2.226678e-01 3.535731e-01 17 82244301 82244361 61 - 2.420 2.456 0.120
ENSG00000141551 E007 265.9617335 1.626685e-04 1.414232e-02 3.854937e-02 17 82244362 82244393 32 - 2.340 2.408 0.226
ENSG00000141551 E008 534.2997696 1.284790e-04 1.231965e-08 1.494092e-07 17 82244394 82244490 97 - 2.612 2.720 0.361
ENSG00000141551 E009 965.2617798 1.277511e-04 3.301790e-07 3.028244e-06 17 82244491 82244644 154 - 2.894 2.970 0.254
ENSG00000141551 E010 668.1277088 1.772299e-04 6.682256e-05 3.647382e-04 17 82244645 82244679 35 - 2.737 2.810 0.242
ENSG00000141551 E011 681.0038927 1.459527e-04 4.221535e-02 9.511858e-02 17 82244680 82244721 42 - 2.769 2.809 0.134
ENSG00000141551 E012 890.7065164 8.989450e-04 1.156440e-01 2.137573e-01 17 82244722 82244831 110 - 2.886 2.927 0.135
ENSG00000141551 E013 27.0096532 7.068627e-04 9.948613e-03 2.863425e-02 17 82244929 82245113 185 - 1.518 1.351 -0.576
ENSG00000141551 E014 514.8094321 1.591328e-04 1.913177e-04 9.267341e-04 17 82245976 82246017 42 - 2.622 2.697 0.250
ENSG00000141551 E015 420.4563168 1.601317e-04 9.873485e-02 1.885549e-01 17 82246018 82246039 22 - 2.557 2.598 0.135
ENSG00000141551 E016 53.3199215 9.989961e-04 8.522652e-02 1.677758e-01 17 82246040 82246197 158 - 1.752 1.672 -0.271
ENSG00000141551 E017 99.4947898 1.153760e-03 1.917880e-01 3.159998e-01 17 82246198 82246317 120 - 1.991 1.947 -0.147
ENSG00000141551 E018 86.0948219 5.231601e-03 6.300887e-02 1.317212e-01 17 82246318 82246433 116 - 1.958 1.871 -0.293
ENSG00000141551 E019 279.5892464 9.100347e-03 1.771789e-04 8.661748e-04 17 82246434 82248874 2441 - 2.526 2.348 -0.596
ENSG00000141551 E020 775.8383205 1.326071e-04 5.867725e-03 1.826525e-02 17 82248875 82249014 140 - 2.817 2.866 0.163
ENSG00000141551 E021 30.3952180 3.489427e-03 8.166693e-10 1.230342e-08 17 82249015 82249238 224 - 1.694 1.283 -1.413
ENSG00000141551 E022 20.7660278 1.538700e-02 1.651643e-05 1.044040e-04 17 82249239 82249430 192 - 1.530 1.132 -1.389
ENSG00000141551 E023 401.7885614 1.866613e-04 6.378374e-03 1.960611e-02 17 82249431 82249488 58 - 2.521 2.584 0.212
ENSG00000141551 E024 591.2634870 2.728679e-03 1.537182e-01 2.667166e-01 17 82249489 82249577 89 - 2.697 2.752 0.181
ENSG00000141551 E025 449.8021733 1.385549e-03 8.550367e-01 9.103455e-01 17 82249578 82249602 25 - 2.605 2.620 0.051
ENSG00000141551 E026 14.5268963 4.448611e-02 8.826051e-01 9.288549e-01 17 82249603 82249697 95 - 1.142 1.164 0.078
ENSG00000141551 E027 55.7615448 1.436857e-02 2.700662e-01 4.086454e-01 17 82249698 82250179 482 - 1.763 1.692 -0.240
ENSG00000141551 E028 940.1719270 3.593982e-04 5.076463e-02 1.105312e-01 17 82251379 82251527 149 - 2.949 2.929 -0.064
ENSG00000141551 E029 726.6864399 1.209073e-04 4.375047e-03 1.419100e-02 17 82252434 82252496 63 - 2.847 2.815 -0.108
ENSG00000141551 E030 584.4402996 1.060546e-04 4.708807e-03 1.512161e-02 17 82252497 82252527 31 - 2.755 2.719 -0.120
ENSG00000141551 E031 737.1164618 9.746995e-05 8.636189e-04 3.486256e-03 17 82252528 82252604 77 - 2.857 2.819 -0.128
ENSG00000141551 E032 1041.7013817 9.009168e-05 1.672832e-08 1.977986e-07 17 82253016 82253215 200 - 3.021 2.962 -0.195
ENSG00000141551 E033 328.3823784 9.195622e-04 2.764945e-03 9.567612e-03 17 82253216 82253219 4 - 2.527 2.462 -0.217
ENSG00000141551 E034 414.0751331 9.535662e-04 1.151411e-02 3.238196e-02 17 82253220 82253244 25 - 2.616 2.567 -0.164
ENSG00000141551 E035 179.5250848 2.285870e-04 1.115164e-29 1.824392e-27 17 82253245 82253663 419 - 2.401 2.101 -1.001
ENSG00000141551 E036 134.4268355 6.083047e-03 2.376014e-16 9.770541e-15 17 82253664 82254301 638 - 2.324 1.933 -1.308
ENSG00000141551 E037 45.4080914 1.924537e-02 2.440643e-08 2.797171e-07 17 82254302 82254679 378 - 1.891 1.430 -1.568
ENSG00000141551 E038 40.0014667 2.557904e-02 2.055657e-05 1.271634e-04 17 82255071 82255129 59 - 1.810 1.410 -1.362
ENSG00000141551 E039 36.2531185 1.803036e-02 4.622046e-06 3.316414e-05 17 82255130 82255163 34 - 1.762 1.371 -1.337
ENSG00000141551 E040 29.7377361 1.965539e-02 6.796297e-05 3.703414e-04 17 82255164 82255186 23 - 1.666 1.303 -1.249
ENSG00000141551 E041 72.3900125 1.380731e-02 3.591417e-04 1.615613e-03 17 82255187 82255328 142 - 1.981 1.737 -0.821
ENSG00000141551 E042 73.4367088 1.421531e-03 1.103852e-05 7.261568e-05 17 82255329 82255428 100 - 1.956 1.766 -0.640
ENSG00000141551 E043 378.8973016 1.973543e-03 2.505464e-01 3.865879e-01 17 82255429 82255437 9 - 2.560 2.538 -0.075
ENSG00000141551 E044 646.6119251 2.103815e-03 1.667505e-01 2.839636e-01 17 82255438 82255577 140 - 2.794 2.768 -0.084
ENSG00000141551 E045 2.6778103 7.030621e-03 8.040085e-01 8.752895e-01 17 82265300 82265685 386 - 0.564 0.529 -0.161
ENSG00000141551 E046 520.6071743 2.966050e-03 8.762505e-02 1.715297e-01 17 82265686 82265796 111 - 2.711 2.669 -0.139
ENSG00000141551 E047 1.0569037 2.915032e-01 9.513752e-01 9.735758e-01 17 82266708 82266724 17 - 0.276 0.296 0.139
ENSG00000141551 E048 5.7274484 3.168295e-03 9.218386e-01 9.546797e-01 17 82266725 82266891 167 - 0.802 0.795 -0.024
ENSG00000141551 E049 0.9179615 1.453340e-02 4.407078e-01 5.823829e-01 17 82266892 82266894 3 - 0.368 0.234 -0.901
ENSG00000141551 E050 0.8178402 6.758635e-02 5.102926e-01 6.455350e-01 17 82266983 82267032 50 - 0.160 0.289 1.091
ENSG00000141551 E051 7.5738762 2.856121e-03 2.701616e-01 4.087408e-01 17 82272070 82272316 247 - 0.802 0.947 0.560
ENSG00000141551 E052 0.0000000       17 82273091 82273136 46 -      
ENSG00000141551 E053 2.3863441 6.803012e-03 1.631573e-02 4.342343e-02 17 82273137 82273305 169 - 0.160 0.612 2.800
ENSG00000141551 E054 581.7521003 6.696375e-03 9.740857e-02 1.865223e-01 17 82273306 82273700 395 - 2.767 2.712 -0.183