ENSG00000141279

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000322157 ENSG00000141279 HEK293_OSMI2_2hA HEK293_TMG_2hB NPEPPS protein_coding protein_coding 53.87481 42.18305 66.45214 1.604397 1.534003 0.6555274 23.458672 14.526022 32.770327 2.8488275 3.0725973 1.1731978 0.43971667 0.34126667 0.49376667 0.1525000 2.602466e-01 4.872754e-25 FALSE TRUE
ENST00000530173 ENSG00000141279 HEK293_OSMI2_2hA HEK293_TMG_2hB NPEPPS protein_coding protein_coding 53.87481 42.18305 66.45214 1.604397 1.534003 0.6555274 6.768082 4.149991 4.466392 3.0245712 2.6220596 0.1057557 0.11752500 0.09986667 0.06676667 -0.0331000 1.000000e+00 4.872754e-25 FALSE TRUE
ENST00000534814 ENSG00000141279 HEK293_OSMI2_2hA HEK293_TMG_2hB NPEPPS protein_coding processed_transcript 53.87481 42.18305 66.45214 1.604397 1.534003 0.6555274 10.947443 6.207630 16.678571 3.1276191 1.1897798 1.4244238 0.18241667 0.14456667 0.25040000 0.1058333 7.488033e-01 4.872754e-25 FALSE FALSE
ENST00000677120 ENSG00000141279 HEK293_OSMI2_2hA HEK293_TMG_2hB NPEPPS protein_coding protein_coding 53.87481 42.18305 66.45214 1.604397 1.534003 0.6555274 4.955926 5.186677 6.479112 0.2659969 0.4032687 0.3204317 0.09749167 0.12303333 0.09733333 -0.0257000 1.355291e-01 4.872754e-25 TRUE TRUE
ENST00000678902 ENSG00000141279 HEK293_OSMI2_2hA HEK293_TMG_2hB NPEPPS protein_coding nonsense_mediated_decay 53.87481 42.18305 66.45214 1.604397 1.534003 0.6555274 2.755963 10.338914 0.000000 1.8114234 0.0000000 -10.0152637 0.06742500 0.24876667 0.00000000 -0.2487667 4.872754e-25 4.872754e-25 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000141279 E001 0.0000000       17 47522942 47522944 3 +      
ENSG00000141279 E002 0.0000000       17 47522945 47522951 7 +      
ENSG00000141279 E003 0.0000000       17 47522952 47522956 5 +      
ENSG00000141279 E004 0.0000000       17 47522957 47522967 11 +      
ENSG00000141279 E005 0.0000000       17 47522968 47522976 9 +      
ENSG00000141279 E006 0.5838113 0.3940046478 6.570328e-01 7.664823e-01 17 47522977 47523063 87 + 0.259 0.140 -1.102
ENSG00000141279 E007 0.5848540 0.0773619479 5.178697e-02 1.123392e-01 17 47530529 47530663 135 + 0.000 0.337 12.607
ENSG00000141279 E008 9.9333430 0.0399838813 1.904687e-01 3.143483e-01 17 47531108 47531215 108 + 1.096 0.929 -0.614
ENSG00000141279 E009 9.7548609 0.0721723521 1.471022e-01 2.577513e-01 17 47531216 47531221 6 + 1.106 0.892 -0.789
ENSG00000141279 E010 11.4833774 0.0379789849 1.104752e-01 2.062376e-01 17 47531222 47531258 37 + 1.166 0.968 -0.722
ENSG00000141279 E011 10.3979902 0.0918709339 4.669851e-01 6.065082e-01 17 47531259 47531268 10 + 1.086 0.995 -0.334
ENSG00000141279 E012 11.7536598 0.0599742051 4.237836e-01 5.668210e-01 17 47531269 47531281 13 + 1.140 1.039 -0.368
ENSG00000141279 E013 54.5173852 0.0253290493 1.449564e-01 2.547784e-01 17 47531282 47531387 106 + 1.795 1.673 -0.413
ENSG00000141279 E014 30.8772242 0.0138717090 3.196949e-02 7.580224e-02 17 47531388 47531389 2 + 1.572 1.405 -0.571
ENSG00000141279 E015 47.9647607 0.0173481661 7.705965e-03 2.304091e-02 17 47531390 47531416 27 + 1.772 1.565 -0.700
ENSG00000141279 E016 138.6618068 0.0038874700 1.370007e-10 2.363356e-09 17 47531417 47531555 139 + 2.246 1.985 -0.875
ENSG00000141279 E017 77.4392510 0.0003266008 6.058856e-13 1.540301e-11 17 47545909 47545993 85 + 2.004 1.724 -0.946
ENSG00000141279 E018 0.0000000       17 47548190 47548327 138 +      
ENSG00000141279 E019 0.0000000       17 47559612 47559687 76 +      
ENSG00000141279 E020 41.2410351 0.0037541203 1.556011e-05 9.893037e-05 17 47569417 47569428 12 + 1.726 1.472 -0.864
ENSG00000141279 E021 83.8227089 0.0007278214 1.366458e-07 1.352656e-06 17 47569429 47569494 66 + 2.008 1.813 -0.657
ENSG00000141279 E022 0.2987644 0.0274111591 2.984496e-01   17 47577045 47577080 36 + 0.189 0.000 -12.280
ENSG00000141279 E023 2.6719507 0.0331122339 3.037716e-01 4.457401e-01 17 47577081 47577160 80 + 0.632 0.468 -0.761
ENSG00000141279 E024 118.8815166 0.0061413376 1.607693e-05 1.018978e-04 17 47579390 47579455 66 + 2.160 1.962 -0.663
ENSG00000141279 E025 115.3948144 0.0007909326 7.951906e-10 1.201519e-08 17 47579456 47579511 56 + 2.148 1.949 -0.668
ENSG00000141279 E026 4.8788623 0.0053021172 1.587530e-02 4.245821e-02 17 47579512 47582200 2689 + 0.894 0.570 -1.333
ENSG00000141279 E027 1.1353558 0.1706449668 5.924229e-01 7.149812e-01 17 47582201 47582592 392 + 0.373 0.252 -0.795
ENSG00000141279 E028 0.8386677 0.2798872430 9.471107e-01 9.707854e-01 17 47582593 47582712 120 + 0.259 0.253 -0.045
ENSG00000141279 E029 0.2214452 0.0460213540 3.637717e-01   17 47582713 47582741 29 + 0.000 0.143 11.246
ENSG00000141279 E030 77.7572122 0.0068354332 1.076370e-01 2.020501e-01 17 47582742 47582797 56 + 1.928 1.854 -0.249
ENSG00000141279 E031 72.6848571 0.0062233024 5.049947e-03 1.606815e-02 17 47582798 47582826 29 + 1.926 1.785 -0.477
ENSG00000141279 E032 76.6052597 0.0053794858 6.202931e-06 4.323656e-05 17 47582827 47582849 23 + 1.981 1.751 -0.775
ENSG00000141279 E033 297.1894914 0.0059585757 1.015869e-03 4.013709e-03 17 47585500 47585700 201 + 2.526 2.403 -0.409
ENSG00000141279 E034 4.5780982 0.0036777323 1.003783e-04 5.236219e-04 17 47585701 47585713 13 + 0.923 0.335 -2.665
ENSG00000141279 E035 4.6866254 0.0237761808 3.127577e-05 1.852926e-04 17 47585714 47585745 32 + 0.950 0.250 -3.350
ENSG00000141279 E036 7.7263676 0.0208932982 2.144669e-05 1.320102e-04 17 47585746 47586147 402 + 1.124 0.522 -2.403
ENSG00000141279 E037 219.3595708 0.0002079283 3.117554e-05 1.847739e-04 17 47586148 47586244 97 + 2.378 2.297 -0.269
ENSG00000141279 E038 1.5595994 0.0087277870 2.449772e-02 6.084508e-02 17 47586245 47586249 5 + 0.539 0.142 -2.665
ENSG00000141279 E039 0.3686942 0.0326220970 8.248766e-01 8.896640e-01 17 47586250 47586290 41 + 0.105 0.143 0.508
ENSG00000141279 E040 0.9943357 0.0123047327 6.479962e-01 7.595888e-01 17 47586291 47586335 45 + 0.321 0.249 -0.494
ENSG00000141279 E041 1.6888774 0.0089438948 8.938545e-02 1.741922e-01 17 47586336 47586352 17 + 0.539 0.249 -1.665
ENSG00000141279 E042 3.3098858 0.0048006564 1.913520e-01 3.154327e-01 17 47586353 47586364 12 + 0.707 0.522 -0.817
ENSG00000141279 E043 181.1107242 0.0001969449 5.467967e-05 3.050953e-04 17 47586365 47586398 34 + 2.298 2.212 -0.288
ENSG00000141279 E044 5.8347023 0.0164500448 3.451060e-02 8.073311e-02 17 47586399 47586522 124 + 0.937 0.653 -1.129
ENSG00000141279 E045 1.9336172 0.1388814896 3.475875e-01 4.917988e-01 17 47586523 47586660 138 + 0.540 0.338 -1.068
ENSG00000141279 E046 0.9350151 0.2501830786 3.056114e-01 4.477358e-01 17 47586661 47586754 94 + 0.375 0.143 -1.821
ENSG00000141279 E047 0.9631146 0.0143732008 6.472473e-01 7.589551e-01 17 47586755 47587122 368 + 0.321 0.249 -0.495
ENSG00000141279 E048 0.9598924 0.0149867170 7.211699e-01 8.156293e-01 17 47587123 47587229 107 + 0.260 0.335 0.504
ENSG00000141279 E049 198.8753767 0.0001795119 6.782858e-05 3.696755e-04 17 47587230 47587281 52 + 2.336 2.256 -0.267
ENSG00000141279 E050 191.6071562 0.0014934022 2.067154e-03 7.432457e-03 17 47587282 47587344 63 + 2.318 2.242 -0.257
ENSG00000141279 E051 0.6664396 0.5062882861 8.166967e-01 8.840326e-01 17 47587345 47587556 212 + 0.190 0.251 0.509
ENSG00000141279 E052 162.1545242 0.0025185562 1.213133e-02 3.384799e-02 17 47590717 47590814 98 + 2.245 2.172 -0.241
ENSG00000141279 E053 100.8307645 0.0009953807 1.959457e-03 7.099196e-03 17 47590815 47590881 67 + 2.051 1.955 -0.323
ENSG00000141279 E054 0.2214452 0.0460213540 3.637717e-01   17 47591729 47591903 175 + 0.000 0.143 11.246
ENSG00000141279 E055 1.1801942 0.0123703452 3.032441e-01 4.451419e-01 17 47591904 47591955 52 + 0.421 0.249 -1.082
ENSG00000141279 E056 160.2296766 0.0002139770 1.595822e-02 4.263665e-02 17 47591956 47592060 105 + 2.229 2.183 -0.154
ENSG00000141279 E057 192.2843680 0.0001947248 3.012170e-01 4.430004e-01 17 47592485 47592545 61 + 2.289 2.285 -0.014
ENSG00000141279 E058 1.2532576 0.0561934745 7.045837e-01 8.030977e-01 17 47592546 47592680 135 + 0.321 0.405 0.497
ENSG00000141279 E059 1.1071414 0.0110851766 9.912284e-01 9.986399e-01 17 47596067 47596352 286 + 0.321 0.335 0.089
ENSG00000141279 E060 301.5481554 0.0001749062 5.784494e-02 1.229364e-01 17 47596353 47596462 110 + 2.489 2.472 -0.058
ENSG00000141279 E061 153.2585859 0.0020396018 5.379426e-01 6.694186e-01 17 47599676 47599679 4 + 2.188 2.185 -0.009
ENSG00000141279 E062 242.2665735 0.0001883481 2.501826e-02 6.190908e-02 17 47599680 47599739 60 + 2.399 2.369 -0.100
ENSG00000141279 E063 0.4804688 0.0212151098 7.565162e-01 8.415820e-01 17 47599740 47599743 4 + 0.189 0.142 -0.495
ENSG00000141279 E064 149.6462851 0.0002652555 4.844427e-01 6.224479e-01 17 47601608 47601613 6 + 2.177 2.179 0.005
ENSG00000141279 E065 314.1641354 0.0002053120 1.682519e-01 2.859292e-01 17 47601614 47601715 102 + 2.502 2.496 -0.020
ENSG00000141279 E066 241.4881397 0.0005777302 8.414963e-02 1.660510e-01 17 47601716 47601747 32 + 2.395 2.374 -0.071
ENSG00000141279 E067 0.5870335 0.1189682678 9.426152e-02 1.817841e-01 17 47601748 47601985 238 + 0.320 0.000 -12.874
ENSG00000141279 E068 2.7785154 0.0055586695 7.313193e-02 1.485273e-01 17 47603494 47603914 421 + 0.684 0.407 -1.303
ENSG00000141279 E069 419.8314016 0.0009268093 3.799500e-02 8.734403e-02 17 47603915 47604049 135 + 2.637 2.614 -0.076
ENSG00000141279 E070 427.7164605 0.0037279305 2.564735e-01 3.934357e-01 17 47605333 47605465 133 + 2.640 2.625 -0.052
ENSG00000141279 E071 300.9768293 0.0002053198 8.029413e-01 8.745146e-01 17 47605466 47605552 87 + 2.474 2.491 0.057
ENSG00000141279 E072 408.2001922 0.0001665027 1.029583e-01 1.949753e-01 17 47612460 47612602 143 + 2.590 2.642 0.173
ENSG00000141279 E073 251.7559195 0.0001589648 5.224433e-02 1.131509e-01 17 47613669 47613725 57 + 2.373 2.439 0.221
ENSG00000141279 E074 366.1220201 0.0005943469 2.012715e-01 3.277797e-01 17 47618350 47618457 108 + 2.542 2.590 0.161
ENSG00000141279 E075 446.1642005 0.0001892014 7.253468e-05 3.923661e-04 17 47619009 47619164 156 + 2.607 2.698 0.304
ENSG00000141279 E076 4.3911944 0.0037959033 1.432233e-03 5.414515e-03 17 47619165 47619277 113 + 0.878 0.407 -2.079
ENSG00000141279 E077 6.4636285 0.0099386097 1.039179e-03 4.094621e-03 17 47619278 47619322 45 + 1.012 0.571 -1.771
ENSG00000141279 E078 5.4994843 0.0028104685 5.871500e-06 4.115502e-05 17 47619323 47619372 50 + 1.001 0.335 -2.954
ENSG00000141279 E079 6.6807212 0.0024065408 2.664451e-04 1.242945e-03 17 47619373 47619495 123 + 1.035 0.570 -1.857
ENSG00000141279 E080 11.7027805 0.0014339471 1.003062e-05 6.664110e-05 17 47619496 47619736 241 + 1.254 0.808 -1.642
ENSG00000141279 E081 226.0673103 0.0001646817 9.866441e-06 6.567931e-05 17 47619737 47619784 48 + 2.295 2.422 0.425
ENSG00000141279 E082 6.7998816 0.0024543028 6.448074e-03 1.978825e-02 17 47619785 47620214 430 + 1.012 0.688 -1.261
ENSG00000141279 E083 388.3943633 0.0001428259 1.933293e-16 8.014366e-15 17 47621768 47621970 203 + 2.504 2.677 0.576
ENSG00000141279 E084 1224.6785054 0.0036037681 4.120351e-17 1.855010e-15 17 47621971 47623374 1404 + 2.953 3.206 0.841
ENSG00000141279 E085 55.6563665 0.0004394694 3.605175e-12 8.069347e-11 17 47623797 47624140 344 + 1.556 1.912 1.205
ENSG00000141279 E086 63.0437948 0.0053082192 8.394546e-13 2.087036e-11 17 47624141 47624445 305 + 1.556 1.985 1.453
ENSG00000141279 E087 45.8571025 0.0037335294 1.587573e-14 5.086638e-13 17 47624446 47624665 220 + 1.379 1.870 1.671