ENSG00000141232

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000499247 ENSG00000141232 HEK293_OSMI2_2hA HEK293_TMG_2hB TOB1 protein_coding protein_coding 14.01618 8.782581 18.10449 1.082373 0.9308929 1.042785 11.184394 8.768372 13.681053 1.093651 0.3607078 0.641208 0.8634583 0.998 0.7576333 -0.2403667 4.541435e-24 4.541435e-24 FALSE TRUE
ENST00000509385 ENSG00000141232 HEK293_OSMI2_2hA HEK293_TMG_2hB TOB1 protein_coding processed_transcript 14.01618 8.782581 18.10449 1.082373 0.9308929 1.042785 2.661386 0.000000 4.227975 0.000000 0.6591397 8.727231 0.1270583 0.000 0.2312000 0.2312000 6.691774e-23 4.541435e-24   FALSE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000141232 E001 222.3987255 0.0010435675 1.883310e-34 4.437654e-32 17 50862223 50862979 757 - 2.195 2.495 1.002
ENSG00000141232 E002 215.8815862 0.0002613192 4.967619e-01 6.333581e-01 17 50862980 50863368 389 - 2.327 2.351 0.079
ENSG00000141232 E003 305.2926323 0.0005688952 1.646528e-12 3.892311e-11 17 50863369 50863960 592 - 2.535 2.409 -0.420
ENSG00000141232 E004 41.7918503 0.0005310430 1.107212e-03 4.327267e-03 17 50863961 50863966 6 - 1.696 1.525 -0.582
ENSG00000141232 E005 64.7268433 0.0003815864 9.799584e-04 3.891303e-03 17 50863967 50864163 197 - 1.870 1.735 -0.458
ENSG00000141232 E006 54.3497982 0.0006119843 1.122190e-06 9.219630e-06 17 50866058 50866354 297 - 1.827 1.594 -0.790
ENSG00000141232 E007 0.4804688 0.0222667332 8.564284e-01 9.112233e-01 17 50867494 50867602 109 - 0.182 0.148 -0.356
ENSG00000141232 E008 0.0000000       17 50867603 50867804 202 -      
ENSG00000141232 E009 0.8815316 0.0135637134 2.913132e-02 7.025539e-02 17 50867805 50868281 477 - 0.409 0.000 -10.912