ENSG00000141027

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000395849 ENSG00000141027 HEK293_OSMI2_2hA HEK293_TMG_2hB NCOR1 protein_coding protein_coding 21.9265 21.32609 19.12339 1.203128 0.9427641 -0.1572032 2.5993737 4.16388892 0.000000 0.45773167 0.00000000 -8.7052484 0.11342083 0.197566667 0.00000000 -0.197566667 1.382387e-24 3.840899e-31 FALSE TRUE
ENST00000464381 ENSG00000141027 HEK293_OSMI2_2hA HEK293_TMG_2hB NCOR1 protein_coding retained_intron 21.9265 21.32609 19.12339 1.203128 0.9427641 -0.1572032 2.2362459 5.55329309 0.000000 0.43020093 0.00000000 -9.1197953 0.09960417 0.263300000 0.00000000 -0.263300000 3.840899e-31 3.840899e-31 FALSE TRUE
ENST00000583226 ENSG00000141027 HEK293_OSMI2_2hA HEK293_TMG_2hB NCOR1 protein_coding processed_transcript 21.9265 21.32609 19.12339 1.203128 0.9427641 -0.1572032 0.3455758 1.20761409 0.000000 1.20761409 0.00000000 -6.9279131 0.01503750 0.052100000 0.00000000 -0.052100000 8.085927e-01 3.840899e-31 FALSE FALSE
MSTRG.13733.12 ENSG00000141027 HEK293_OSMI2_2hA HEK293_TMG_2hB NCOR1 protein_coding   21.9265 21.32609 19.12339 1.203128 0.9427641 -0.1572032 1.5171867 0.00000000 3.297110 0.00000000 1.00811727 8.3694273 0.07098750 0.000000000 0.16830000 0.168300000 2.219732e-12 3.840899e-31 FALSE TRUE
MSTRG.13733.13 ENSG00000141027 HEK293_OSMI2_2hA HEK293_TMG_2hB NCOR1 protein_coding   21.9265 21.32609 19.12339 1.203128 0.9427641 -0.1572032 0.8475363 0.07994913 1.437019 0.07994913 0.50718402 4.0078302 0.03861250 0.003666667 0.07430000 0.070633333 6.964352e-03 3.840899e-31 FALSE TRUE
MSTRG.13733.2 ENSG00000141027 HEK293_OSMI2_2hA HEK293_TMG_2hB NCOR1 protein_coding   21.9265 21.32609 19.12339 1.203128 0.9427641 -0.1572032 1.9824549 2.06531263 1.710264 0.15954626 0.08443427 -0.2706989 0.08873750 0.097300000 0.08956667 -0.007733333 8.858215e-01 3.840899e-31 TRUE TRUE
MSTRG.13733.6 ENSG00000141027 HEK293_OSMI2_2hA HEK293_TMG_2hB NCOR1 protein_coding   21.9265 21.32609 19.12339 1.203128 0.9427641 -0.1572032 2.6106065 1.64085090 2.844381 0.56041837 0.35206412 0.7899682 0.11983333 0.078633333 0.15090000 0.072266667 3.495002e-01 3.840899e-31 FALSE TRUE
MSTRG.13733.7 ENSG00000141027 HEK293_OSMI2_2hA HEK293_TMG_2hB NCOR1 protein_coding   21.9265 21.32609 19.12339 1.203128 0.9427641 -0.1572032 3.0154287 1.57173543 4.152784 0.12956220 0.07157895 1.3960405 0.13915833 0.073566667 0.21866667 0.145100000 5.048192e-11 3.840899e-31 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000141027 E001 7.9273733 0.0022263331 6.970558e-03 2.114675e-02 17 16029157 16029688 532 - 0.786 1.086 1.130
ENSG00000141027 E002 4.8648473 0.0055014712 1.050442e-02 2.998841e-02 17 16029689 16029902 214 - 0.584 0.927 1.391
ENSG00000141027 E003 4.7188209 0.0034764897 3.403681e-01 4.843369e-01 17 16029903 16030147 245 - 0.697 0.819 0.493
ENSG00000141027 E004 4.9067688 0.0036478291 5.390959e-01 6.703945e-01 17 16030148 16030199 52 - 0.744 0.819 0.299
ENSG00000141027 E005 16.5790489 0.0112050012 2.244703e-03 7.982360e-03 17 16030200 16030294 95 - 1.092 1.379 1.015
ENSG00000141027 E006 89.0895349 0.0004040825 7.390263e-12 1.571817e-10 17 16030295 16031208 914 - 1.814 2.068 0.854
ENSG00000141027 E007 14.4259150 0.0109406373 6.185737e-02 1.297449e-01 17 16031209 16031240 32 - 1.092 1.269 0.630
ENSG00000141027 E008 16.9449274 0.0253229712 2.695179e-01 4.080146e-01 17 16031241 16031375 135 - 1.197 1.304 0.376
ENSG00000141027 E009 5.9448453 0.0150997285 4.151829e-01 5.585821e-01 17 16031376 16031385 10 - 0.786 0.888 0.398
ENSG00000141027 E010 5.7276519 0.0069554298 2.483243e-01 3.839567e-01 17 16031386 16031403 18 - 0.744 0.888 0.567
ENSG00000141027 E011 183.8014020 0.0019077824 3.615202e-35 8.923724e-33 17 16031404 16031884 481 - 2.021 2.435 1.385
ENSG00000141027 E012 113.8010678 0.0088030245 3.222922e-08 3.607308e-07 17 16031885 16031987 103 - 1.887 2.195 1.030
ENSG00000141027 E013 139.1907057 0.0030849342 1.567832e-09 2.242854e-08 17 16031988 16032091 104 - 2.019 2.253 0.784
ENSG00000141027 E014 288.4064343 0.0002397179 9.373440e-35 2.265013e-32 17 16032092 16032432 341 - 2.317 2.576 0.865
ENSG00000141027 E015 102.2457246 0.0003233096 5.477005e-11 1.009930e-09 17 16032433 16032472 40 - 1.890 2.115 0.755
ENSG00000141027 E016 73.9570206 0.0005186200 6.758063e-06 4.671585e-05 17 16032473 16032483 11 - 1.777 1.957 0.607
ENSG00000141027 E017 203.7623931 0.0013368417 2.278028e-14 7.107471e-13 17 16034765 16034941 177 - 2.191 2.413 0.741
ENSG00000141027 E018 83.7165010 0.0045703101 9.388024e-04 3.750122e-03 17 16034942 16034944 3 - 1.847 2.006 0.534
ENSG00000141027 E019 0.9578146 0.0416831543 9.789957e-02 1.873204e-01 17 16039220 16039432 213 - 0.109 0.398 2.403
ENSG00000141027 E020 154.1952234 0.0015239502 2.234694e-07 2.122511e-06 17 16039433 16039516 84 - 2.102 2.269 0.557
ENSG00000141027 E021 174.8508408 0.0001996846 4.188130e-16 1.660935e-14 17 16039517 16039654 138 - 2.128 2.341 0.713
ENSG00000141027 E022 1.8800425 0.0077701187 1.699678e-01 2.881629e-01 17 16039655 16040108 454 - 0.330 0.558 1.201
ENSG00000141027 E023 78.7583855 0.0003143748 6.125875e-11 1.118043e-09 17 16040441 16040444 4 - 1.760 2.015 0.860
ENSG00000141027 E024 100.3418940 0.0002664776 2.092774e-12 4.872433e-11 17 16040445 16040491 47 - 1.871 2.114 0.817
ENSG00000141027 E025 63.5460530 0.0005395926 1.519533e-08 1.811534e-07 17 16040492 16040494 3 - 1.669 1.918 0.838
ENSG00000141027 E026 5.3964318 0.0031604206 1.047767e-02 2.992601e-02 17 16040495 16040659 165 - 0.615 0.946 1.327
ENSG00000141027 E027 1.3524354 0.0602530036 2.348190e-01 3.681465e-01 17 16046892 16046899 8 - 0.475 0.242 -1.416
ENSG00000141027 E028 2.5305388 0.1110477277 5.107449e-01 6.459133e-01 17 16046900 16046950 51 - 0.614 0.458 -0.734
ENSG00000141027 E029 78.1099654 0.0005749091 1.250681e-10 2.172544e-09 17 16046951 16046989 39 - 1.751 2.009 0.869
ENSG00000141027 E030 124.1747982 0.0013563084 2.763885e-09 3.778939e-08 17 16046990 16047093 104 - 1.983 2.189 0.691
ENSG00000141027 E031 137.8044453 0.0012819350 5.601354e-06 3.942487e-05 17 16048845 16048985 141 - 2.061 2.209 0.494
ENSG00000141027 E032 46.0189447 0.0125645220 2.569946e-02 6.331768e-02 17 16048986 16048988 3 - 1.585 1.742 0.533
ENSG00000141027 E033 0.5910844 0.3523342237 8.273839e-01 8.914696e-01 17 16048989 16049397 409 - 0.195 0.236 0.346
ENSG00000141027 E034 0.5996172 0.3788596173 8.367205e-01 8.978726e-01 17 16056974 16057513 540 - 0.196 0.235 0.335
ENSG00000141027 E035 196.1407970 0.0011863792 3.885490e-04 1.730480e-03 17 16057514 16057737 224 - 2.242 2.339 0.325
ENSG00000141027 E036 160.8869242 0.0002218589 1.355035e-02 3.719694e-02 17 16057907 16058064 158 - 2.176 2.238 0.206
ENSG00000141027 E037 0.0000000       17 16058065 16058336 272 -      
ENSG00000141027 E038 135.2635091 0.0002244941 4.308205e-04 1.892803e-03 17 16058471 16058599 129 - 2.082 2.182 0.334
ENSG00000141027 E039 205.1814956 0.0002107284 6.376199e-02 1.329582e-01 17 16061401 16061757 357 - 2.296 2.334 0.129
ENSG00000141027 E040 88.0215489 0.0036361180 9.678487e-01 9.839104e-01 17 16061758 16061866 109 - 1.950 1.942 -0.025
ENSG00000141027 E041 65.6548378 0.0042062058 1.063417e-01 2.001471e-01 17 16061867 16061894 28 - 1.866 1.770 -0.324
ENSG00000141027 E042 110.6696931 0.0002961389 7.989114e-01 8.716973e-01 17 16062105 16062270 166 - 2.045 2.046 0.002
ENSG00000141027 E043 87.2708009 0.0003162652 3.508839e-02 8.181605e-02 17 16064068 16064187 120 - 1.909 1.981 0.243
ENSG00000141027 E044 108.0083113 0.0002536840 1.070851e-02 3.047237e-02 17 16064870 16065019 150 - 2.079 1.983 -0.323
ENSG00000141027 E045 145.0216769 0.0009702123 2.024959e-01 3.293349e-01 17 16065485 16065691 207 - 2.185 2.135 -0.166
ENSG00000141027 E046 46.4363189 0.0004809539 2.570620e-01 3.941057e-01 17 16065692 16065694 3 - 1.651 1.701 0.171
ENSG00000141027 E047 0.7372893 0.5990001335 6.459104e-01 7.579645e-01 17 16065695 16065885 191 - 0.329 0.134 -1.646
ENSG00000141027 E048 125.5683117 0.0034676437 7.135217e-01 8.100008e-01 17 16067894 16068121 228 - 2.111 2.090 -0.070
ENSG00000141027 E049 0.2955422 0.0291208966 8.327042e-01   17 16068122 16068412 291 - 0.109 0.137 0.391
ENSG00000141027 E050 87.6589584 0.0045038132 8.814969e-02 1.723057e-01 17 16070165 16070298 134 - 1.987 1.897 -0.303
ENSG00000141027 E051 90.6716720 0.0015779213 4.283882e-03 1.393754e-02 17 16070299 16070390 92 - 2.016 1.890 -0.425
ENSG00000141027 E052 109.2064046 0.0049471661 2.164875e-03 7.734783e-03 17 16070391 16070525 135 - 2.107 1.953 -0.516
ENSG00000141027 E053 170.5958388 0.0045477429 2.453494e-07 2.311783e-06 17 16071409 16071665 257 - 2.327 2.100 -0.757
ENSG00000141027 E054 85.0260911 0.0182347502 3.802523e-03 1.258850e-02 17 16072145 16072228 84 - 2.023 1.804 -0.738
ENSG00000141027 E055 97.2589155 0.0178683286 3.388841e-04 1.536046e-03 17 16073429 16073569 141 - 2.098 1.834 -0.889
ENSG00000141027 E056 108.1702137 0.0039749530 7.897242e-06 5.371060e-05 17 16075534 16075702 169 - 2.126 1.913 -0.714
ENSG00000141027 E057 95.1072284 0.0002873694 8.611830e-09 1.074406e-07 17 16079964 16080064 101 - 2.074 1.850 -0.753
ENSG00000141027 E058 0.0000000       17 16080351 16080407 57 -      
ENSG00000141027 E059 95.8402363 0.0063236314 2.030375e-05 1.257309e-04 17 16080408 16080509 102 - 2.079 1.843 -0.794
ENSG00000141027 E060 0.0000000       17 16080510 16080513 4 -      
ENSG00000141027 E061 89.2291258 0.0046269825 1.445619e-06 1.160261e-05 17 16080607 16080727 121 - 2.055 1.802 -0.852
ENSG00000141027 E062 78.6239017 0.0221645981 5.458321e-02 1.172606e-01 17 16086282 16086398 117 - 1.967 1.813 -0.517
ENSG00000141027 E063 47.4509005 0.0128342253 3.416045e-02 8.007120e-02 17 16086399 16086442 44 - 1.755 1.593 -0.552
ENSG00000141027 E064 34.4713368 0.0139786488 4.227453e-01 5.658837e-01 17 16087172 16087345 174 - 1.582 1.514 -0.235
ENSG00000141027 E065 3.7965930 0.0042571336 3.714837e-01 5.159263e-01 17 16091564 16091862 299 - 0.615 0.738 0.519
ENSG00000141027 E066 106.9732853 0.0003048891 6.899096e-09 8.764253e-08 17 16091863 16092058 196 - 2.121 1.908 -0.717
ENSG00000141027 E067 79.6089616 0.0017000413 1.304066e-04 6.605830e-04 17 16098367 16098496 130 - 1.980 1.802 -0.601
ENSG00000141027 E068 216.3671565 0.0009877968 4.920300e-12 1.077489e-10 17 16101250 16101717 468 - 2.421 2.216 -0.687
ENSG00000141027 E069 75.1626342 0.0003753498 1.566361e-05 9.953456e-05 17 16101718 16101757 40 - 1.959 1.770 -0.638
ENSG00000141027 E070 54.4774045 0.0004335958 1.829057e-02 4.776569e-02 17 16101758 16101805 48 - 1.797 1.674 -0.414
ENSG00000141027 E071 82.2718013 0.0026072932 5.816823e-03 1.813093e-02 17 16108786 16108912 127 - 1.978 1.841 -0.458
ENSG00000141027 E072 91.9266555 0.0090213894 3.345442e-01 4.782913e-01 17 16117888 16118027 140 - 1.999 1.934 -0.218
ENSG00000141027 E073 61.7077705 0.0284835174 5.452838e-01 6.756648e-01 17 16119423 16119485 63 - 1.774 1.828 0.182
ENSG00000141027 E074 74.8259827 0.0420333676 2.112194e-01 3.399360e-01 17 16121052 16121269 218 - 1.807 1.952 0.486
ENSG00000141027 E075 0.0000000       17 16122610 16122635 26 -      
ENSG00000141027 E076 13.5429444 0.1220684617 7.609040e-01 8.448707e-01 17 16126082 16126106 25 - 1.137 1.201 0.229
ENSG00000141027 E077 9.2273483 0.1067771251 9.170962e-01 9.516151e-01 17 16126107 16126131 25 - 1.014 1.018 0.015
ENSG00000141027 E078 26.9056494 0.0490628208 8.438459e-01 9.027941e-01 17 16126132 16126206 75 - 1.463 1.438 -0.086
ENSG00000141027 E079 10.1099356 0.0260197151 9.034904e-01 9.425929e-01 17 16126207 16126209 3 - 1.049 1.056 0.022
ENSG00000141027 E080 56.3258199 0.0150672925 6.903757e-01 7.920834e-01 17 16137311 16137412 102 - 1.778 1.744 -0.117
ENSG00000141027 E081 59.6788145 0.0067572788 1.391268e-01 2.468615e-01 17 16138158 16138212 55 - 1.829 1.736 -0.315
ENSG00000141027 E082 117.2795745 0.0047226013 1.145919e-02 3.225527e-02 17 16139008 16139186 179 - 2.130 2.008 -0.412
ENSG00000141027 E083 92.4344907 0.0003283838 1.176345e-04 6.030114e-04 17 16143606 16143696 91 - 2.039 1.887 -0.512
ENSG00000141027 E084 109.7469777 0.0002517881 8.499550e-10 1.275720e-08 17 16146376 16146548 173 - 2.136 1.913 -0.746
ENSG00000141027 E085 62.8122683 0.0063467081 4.349624e-07 3.893330e-06 17 16149451 16149517 67 - 1.925 1.610 -1.067
ENSG00000141027 E086 19.1413728 0.0010862626 1.279395e-03 4.908314e-03 17 16151590 16151616 27 - 1.415 1.148 -0.937
ENSG00000141027 E087 50.5099117 0.0004933129 7.294910e-09 9.216398e-08 17 16151946 16151998 53 - 1.833 1.524 -1.046
ENSG00000141027 E088 47.5212918 0.0016073080 1.172812e-09 1.715588e-08 17 16153339 16153395 57 - 1.820 1.468 -1.197
ENSG00000141027 E089 58.9464164 0.0008281575 2.018665e-15 7.324842e-14 17 16158760 16158873 114 - 1.928 1.519 -1.385
ENSG00000141027 E090 0.2214452 0.0392247650 3.680881e-01   17 16164871 16164905 35 - 0.000 0.138 11.218
ENSG00000141027 E091 0.6663248 0.1083468040 2.664502e-02 6.525356e-02 17 16164906 16164978 73 - 0.000 0.394 13.199
ENSG00000141027 E092 73.4555313 0.0008057276 3.858170e-25 4.274379e-23 17 16164979 16165161 183 - 2.043 1.548 -1.672
ENSG00000141027 E093 45.6536893 0.0004723622 4.376577e-16 1.730598e-14 17 16171803 16171862 60 - 1.833 1.362 -1.606
ENSG00000141027 E094 69.0193574 0.0084709615 1.475694e-17 7.070454e-16 17 16171863 16171995 133 - 2.035 1.456 -1.962
ENSG00000141027 E095 0.2966881 0.0293102790 2.928058e-01   17 16171996 16172020 25 - 0.195 0.000 -11.702
ENSG00000141027 E096 71.3159592 0.0100507332 2.576014e-14 7.972849e-13 17 16186554 16186687 134 - 2.038 1.501 -1.818
ENSG00000141027 E097 69.1564235 0.0049422635 3.792100e-16 1.514019e-14 17 16194462 16194639 178 - 2.014 1.530 -1.637
ENSG00000141027 E098 2.1047020 0.0067858097 3.047078e-03 1.040501e-02 17 16197995 16198170 176 - 0.671 0.138 -3.307
ENSG00000141027 E099 2.5422964 0.0059210204 6.448091e-04 2.697341e-03 17 16198171 16198600 430 - 0.744 0.138 -3.606
ENSG00000141027 E100 13.6558849 0.0013968260 5.096103e-03 1.619271e-02 17 16198601 16198719 119 - 1.270 0.998 -0.975
ENSG00000141027 E101 28.5764747 0.0029450340 1.642199e-09 2.339346e-08 17 16215362 16215548 187 - 1.631 1.171 -1.595
ENSG00000141027 E102 1.1040340 0.0123113544 4.428046e-01 5.843655e-01 17 16215654 16216091 438 - 0.384 0.242 -0.928
ENSG00000141027 E103 0.0000000       17 16217865 16218185 321 -