ENSG00000140575

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000268182 ENSG00000140575 HEK293_OSMI2_2hA HEK293_TMG_2hB IQGAP1 protein_coding protein_coding 36.49504 19.79691 49.5163 1.862657 1.199644 1.322191 22.321616 5.020086 33.24732934 1.3727560 0.96118644 2.725017 0.5199125 0.2453000 0.6731000000 0.42780000 5.187065e-07 3.325363e-26 FALSE TRUE
ENST00000559674 ENSG00000140575 HEK293_OSMI2_2hA HEK293_TMG_2hB IQGAP1 protein_coding retained_intron 36.49504 19.79691 49.5163 1.862657 1.199644 1.322191 7.964422 3.419201 12.84456234 1.7338229 1.67750593 1.906336 0.1912583 0.1614000 0.2580333333 0.09663333 7.597067e-01 3.325363e-26 FALSE FALSE
ENST00000560738 ENSG00000140575 HEK293_OSMI2_2hA HEK293_TMG_2hB IQGAP1 protein_coding protein_coding 36.49504 19.79691 49.5163 1.862657 1.199644 1.322191 2.011499 3.948420 0.00000000 0.4244957 0.00000000 -8.628781 0.1093917 0.2066000 0.0000000000 -0.20660000 5.955249e-26 3.325363e-26 FALSE TRUE
ENST00000561086 ENSG00000140575 HEK293_OSMI2_2hA HEK293_TMG_2hB IQGAP1 protein_coding retained_intron 36.49504 19.79691 49.5163 1.862657 1.199644 1.322191 2.106020 6.584671 0.04070773 0.5796209 0.02440189 -7.022951 0.1097833 0.3423333 0.0008333333 -0.34150000 3.325363e-26 3.325363e-26 TRUE FALSE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000140575 E001 2.1141652 0.0077706933 4.514124e-01 5.923662e-01 15 90388242 90388246 5 + 0.460 0.370 -0.486
ENSG00000140575 E002 11.5477780 0.0900971348 9.278577e-01 9.585875e-01 15 90388247 90388260 14 + 0.992 1.135 0.521
ENSG00000140575 E003 22.1786629 0.0013644907 9.738956e-01 9.877224e-01 15 90388261 90388276 16 + 1.270 1.353 0.292
ENSG00000140575 E004 109.4344422 0.0002665027 9.322712e-01 9.613324e-01 15 90388277 90388354 78 + 1.941 2.034 0.311
ENSG00000140575 E005 118.1075395 0.0002877809 7.484102e-01 8.356707e-01 15 90388355 90388396 42 + 1.978 2.055 0.259
ENSG00000140575 E006 131.0400782 0.0005714116 2.033482e-01 3.303891e-01 15 90390774 90390824 51 + 2.031 2.073 0.139
ENSG00000140575 E007 127.5567169 0.0002375612 9.099968e-02 1.767115e-01 15 90390825 90390873 49 + 2.023 2.050 0.088
ENSG00000140575 E008 18.6812213 0.0252972081 1.010526e-17 4.967605e-16 15 90390874 90391932 1059 + 0.720 1.762 3.742
ENSG00000140575 E009 100.0233219 0.0002821115 3.963512e-19 2.291350e-17 15 90426110 90426151 42 + 1.981 1.617 -1.230
ENSG00000140575 E010 134.6611342 0.0046912869 3.031564e-15 1.077929e-13 15 90426152 90426266 115 + 2.108 1.756 -1.181
ENSG00000140575 E011 116.9071144 0.0197139560 3.728508e-07 3.383087e-06 15 90429589 90429666 78 + 2.044 1.716 -1.104
ENSG00000140575 E012 0.1515154 0.0423723065 1.000000e+00   15 90429667 90429849 183 + 0.063 0.000 -9.553
ENSG00000140575 E013 0.0000000       15 90431221 90431252 32 +      
ENSG00000140575 E014 124.4224854 0.0002561995 3.714139e-20 2.409700e-18 15 90433719 90433795 77 + 2.071 1.750 -1.078
ENSG00000140575 E015 114.5435270 0.0059216900 3.136064e-08 3.514867e-07 15 90439332 90439399 68 + 2.023 1.786 -0.799
ENSG00000140575 E016 124.7459427 0.0030441198 1.575112e-11 3.174808e-10 15 90440502 90440615 114 + 2.062 1.805 -0.863
ENSG00000140575 E017 165.3225897 0.0102213310 2.812401e-07 2.617801e-06 15 90441506 90441684 179 + 2.180 1.951 -0.767
ENSG00000140575 E018 115.9388388 0.0085949972 1.210259e-06 9.876371e-06 15 90443394 90443478 85 + 2.026 1.810 -0.728
ENSG00000140575 E019 120.2193891 0.0135749666 9.269164e-03 2.695717e-02 15 90448573 90448736 164 + 2.020 1.929 -0.303
ENSG00000140575 E020 81.0100286 0.0179029138 6.822898e-02 1.404319e-01 15 90449559 90449643 85 + 1.843 1.787 -0.187
ENSG00000140575 E021 140.2272067 0.0296560043 8.554579e-03 2.517576e-02 15 90452775 90452938 164 + 2.094 1.959 -0.454
ENSG00000140575 E022 172.7921395 0.0283931024 9.793592e-04 3.889331e-03 15 90453132 90453292 161 + 2.193 2.010 -0.611
ENSG00000140575 E023 126.4846641 0.0002790137 3.738750e-07 3.391050e-06 15 90454428 90454552 125 + 2.045 1.931 -0.386
ENSG00000140575 E024 161.9065662 0.0002434322 1.225972e-07 1.224466e-06 15 90456152 90456315 164 + 2.149 2.052 -0.325
ENSG00000140575 E025 101.4656771 0.0011275721 6.000738e-06 4.197393e-05 15 90466001 90466046 46 + 1.954 1.831 -0.416
ENSG00000140575 E026 98.9696827 0.0005825182 9.426044e-07 7.863164e-06 15 90466047 90466091 45 + 1.947 1.808 -0.465
ENSG00000140575 E027 157.0839086 0.0026529720 2.220979e-05 1.362646e-04 15 90466269 90466436 168 + 2.137 2.044 -0.312
ENSG00000140575 E028 88.3517055 0.0025462022 1.494337e-04 7.445236e-04 15 90467450 90467481 32 + 1.893 1.780 -0.380
ENSG00000140575 E029 110.2858726 0.0002737599 1.073227e-05 7.082331e-05 15 90467482 90467592 111 + 1.985 1.887 -0.328
ENSG00000140575 E030 48.2110035 0.0005859860 4.946800e-03 1.578315e-02 15 90472840 90472841 2 + 1.630 1.540 -0.306
ENSG00000140575 E031 146.9981364 0.0014087930 7.439362e-04 3.057190e-03 15 90472842 90473010 169 + 2.098 2.053 -0.151
ENSG00000140575 E032 0.2998086 0.0297666267 3.628777e-01   15 90473011 90473078 68 + 0.063 0.223 2.096
ENSG00000140575 E033 1.0287911 0.0129598827 1.426063e-01 2.515862e-01 15 90473548 90473714 167 + 0.168 0.481 2.101
ENSG00000140575 E034 126.1546814 0.0010875498 1.851959e-03 6.764428e-03 15 90473715 90473798 84 + 2.033 1.994 -0.130
ENSG00000140575 E035 0.1472490 0.0426260099 1.000000e+00   15 90473799 90473895 97 + 0.063 0.000 -9.552
ENSG00000140575 E036 115.5339982 0.0002798596 2.031389e-03 7.324296e-03 15 90473896 90473967 72 + 1.993 1.957 -0.119
ENSG00000140575 E037 119.2890455 0.0002519322 3.272723e-04 1.489722e-03 15 90474064 90474133 70 + 2.009 1.954 -0.184
ENSG00000140575 E038 1.1824861 0.0124530212 9.058717e-02 1.760530e-01 15 90474134 90474239 106 + 0.354 0.000 -12.552
ENSG00000140575 E039 0.4482035 0.0287875030 5.205002e-01 6.544581e-01 15 90474322 90474483 162 + 0.168 0.000 -11.137
ENSG00000140575 E040 0.0000000       15 90474484 90474484 1 +      
ENSG00000140575 E041 176.4253424 0.0002374223 1.552610e-09 2.222253e-08 15 90474485 90474693 209 + 2.190 2.073 -0.391
ENSG00000140575 E042 0.2934659 0.0292480867 3.623725e-01   15 90474694 90474857 164 + 0.063 0.223 2.097
ENSG00000140575 E043 0.0000000       15 90475689 90475754 66 +      
ENSG00000140575 E044 158.4854462 0.0002045535 9.281177e-10 1.384154e-08 15 90476663 90476818 156 + 2.146 2.015 -0.440
ENSG00000140575 E045 181.2406958 0.0005564133 7.011011e-07 6.019010e-06 15 90477067 90477230 164 + 2.196 2.115 -0.270
ENSG00000140575 E046 216.9717524 0.0003388855 4.371971e-04 1.917483e-03 15 90477665 90477889 225 + 2.261 2.246 -0.052
ENSG00000140575 E047 165.3575619 0.0002237857 1.781911e-01 2.988788e-01 15 90481960 90482100 141 + 2.130 2.176 0.153
ENSG00000140575 E048 118.6258739 0.0002605454 3.720608e-01 5.165422e-01 15 90482197 90482281 85 + 1.984 2.039 0.185
ENSG00000140575 E049 1.6241314 0.0088490806 7.375936e-01 8.277152e-01 15 90482702 90482749 48 + 0.383 0.370 -0.072
ENSG00000140575 E050 0.3030308 0.3567996383 1.000000e+00   15 90483205 90483360 156 + 0.119 0.000 -10.559
ENSG00000140575 E051 236.3620142 0.0001594273 2.635296e-02 6.465114e-02 15 90483361 90483593 233 + 2.288 2.316 0.096
ENSG00000140575 E052 103.6400684 0.0007992061 5.694161e-02 1.213601e-01 15 90484220 90484244 25 + 1.937 1.944 0.023
ENSG00000140575 E053 190.8853822 0.0005345527 2.565278e-02 6.322158e-02 15 90484245 90484352 108 + 2.197 2.215 0.060
ENSG00000140575 E054 166.6943184 0.0026723282 9.533713e-01 9.748392e-01 15 90486030 90486094 65 + 2.122 2.213 0.306
ENSG00000140575 E055 148.8762177 0.0008412431 7.957779e-01 8.696061e-01 15 90486095 90486132 38 + 2.074 2.154 0.268
ENSG00000140575 E056 2.5945072 0.1705185509 7.927080e-01 8.674735e-01 15 90486133 90486558 426 + 0.506 0.478 -0.134
ENSG00000140575 E057 1.3820727 0.1679458041 9.627867e-01 9.804871e-01 15 90486743 90486882 140 + 0.323 0.369 0.275
ENSG00000140575 E058 1.5887692 0.1291601304 6.681779e-01 7.752448e-01 15 90486883 90486953 71 + 0.323 0.481 0.881
ENSG00000140575 E059 246.4215713 0.0002001182 6.259400e-01 7.419659e-01 15 90486954 90487089 136 + 2.293 2.369 0.256
ENSG00000140575 E060 0.5879639 0.0211721057 9.033367e-01 9.424792e-01 15 90487469 90487494 26 + 0.168 0.223 0.513
ENSG00000140575 E061 200.8649527 0.0002016835 1.954392e-01 3.205097e-01 15 90487495 90487582 88 + 2.211 2.262 0.171
ENSG00000140575 E062 335.0122042 0.0007974709 7.020021e-01 8.009314e-01 15 90491333 90491545 213 + 2.419 2.519 0.332
ENSG00000140575 E063 0.0000000       15 90491546 90491671 126 +      
ENSG00000140575 E064 261.7020594 0.0002405900 2.408532e-02 5.998833e-02 15 90492545 90492711 167 + 2.301 2.448 0.492
ENSG00000140575 E065 0.8952612 0.0156079217 7.419469e-01 8.309712e-01 15 90494027 90494712 686 + 0.252 0.224 -0.224
ENSG00000140575 E066 197.4582232 0.0001942148 3.959449e-04 1.758871e-03 15 90494713 90494835 123 + 2.166 2.357 0.637
ENSG00000140575 E067 0.6235652 0.0206772097 9.036808e-01 9.427212e-01 15 90496714 90497231 518 + 0.168 0.224 0.515
ENSG00000140575 E068 157.1527478 0.0013605569 2.717154e-06 2.053851e-05 15 90497232 90497340 109 + 2.048 2.303 0.852
ENSG00000140575 E069 1470.4512716 0.0092289381 1.767138e-25 2.032660e-23 15 90499995 90502239 2245 + 2.920 3.414 1.641