ENSG00000139636

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000267102 ENSG00000139636 HEK293_OSMI2_2hA HEK293_TMG_2hB LMBR1L protein_coding protein_coding 32.82857 35.33902 23.31715 1.736707 0.979401 -0.5996604 9.918030 13.8088731 4.337148 0.77793039 0.07905629 -1.66849876 0.29706250 0.39070000 0.18643333 -0.20426667 6.178239e-18 6.178239e-18 FALSE TRUE
ENST00000547698 ENSG00000139636 HEK293_OSMI2_2hA HEK293_TMG_2hB LMBR1L protein_coding protein_coding 32.82857 35.33902 23.31715 1.736707 0.979401 -0.5996604 2.170084 3.4177474 1.113555 0.79469870 0.14617569 -1.60918988 0.06425000 0.09736667 0.04816667 -0.04920000 1.913190e-01 6.178239e-18 FALSE FALSE
ENST00000547813 ENSG00000139636 HEK293_OSMI2_2hA HEK293_TMG_2hB LMBR1L protein_coding retained_intron 32.82857 35.33902 23.31715 1.736707 0.979401 -0.5996604 2.073073 2.0613635 2.175555 0.44114179 0.16896767 0.07741921 0.06504583 0.05743333 0.09300000 0.03556667 8.692394e-02 6.178239e-18 FALSE FALSE
ENST00000549587 ENSG00000139636 HEK293_OSMI2_2hA HEK293_TMG_2hB LMBR1L protein_coding retained_intron 32.82857 35.33902 23.31715 1.736707 0.979401 -0.5996604 1.739981 0.9917106 1.666697 0.65875277 0.33100367 0.74315645 0.05312500 0.02646667 0.07073333 0.04426667 1.820013e-01 6.178239e-18   FALSE
ENST00000549730 ENSG00000139636 HEK293_OSMI2_2hA HEK293_TMG_2hB LMBR1L protein_coding retained_intron 32.82857 35.33902 23.31715 1.736707 0.979401 -0.5996604 1.830118 0.7534423 2.020149 0.27749965 0.25797065 1.41099490 0.05795833 0.02216667 0.08640000 0.06423333 3.257996e-02 6.178239e-18 FALSE FALSE
ENST00000550867 ENSG00000139636 HEK293_OSMI2_2hA HEK293_TMG_2hB LMBR1L protein_coding retained_intron 32.82857 35.33902 23.31715 1.736707 0.979401 -0.5996604 3.126132 3.3343572 2.609651 0.31711927 0.08794882 -0.35235413 0.09755417 0.09403333 0.11240000 0.01836667 4.893493e-01 6.178239e-18 TRUE TRUE
ENST00000551535 ENSG00000139636 HEK293_OSMI2_2hA HEK293_TMG_2hB LMBR1L protein_coding retained_intron 32.82857 35.33902 23.31715 1.736707 0.979401 -0.5996604 1.560171 0.4906244 1.889465 0.15903551 0.16221645 1.92379272 0.04955000 0.01390000 0.08190000 0.06800000 2.166823e-04 6.178239e-18 FALSE FALSE
ENST00000552141 ENSG00000139636 HEK293_OSMI2_2hA HEK293_TMG_2hB LMBR1L protein_coding retained_intron 32.82857 35.33902 23.31715 1.736707 0.979401 -0.5996604 2.503165 2.2368089 2.336578 0.07428269 0.09555265 0.06268069 0.07839167 0.06373333 0.10090000 0.03716667 4.896679e-02 6.178239e-18 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000139636 E001 2.1807804 0.0497389965 2.323134e-01 3.651887e-01 12 49097136 49097136 1 - 0.292 0.533 1.336
ENSG00000139636 E002 2.1807804 0.0497389965 2.323134e-01 3.651887e-01 12 49097137 49097138 2 - 0.292 0.533 1.336
ENSG00000139636 E003 4.3938261 0.0515382920 4.537031e-02 1.008733e-01 12 49097139 49097141 3 - 0.387 0.780 1.808
ENSG00000139636 E004 4.5453415 0.0526211347 1.041121e-01 1.967610e-01 12 49097142 49097144 3 - 0.465 0.780 1.392
ENSG00000139636 E005 5.1699363 0.0198569812 3.293232e-02 7.766948e-02 12 49097145 49097156 12 - 0.465 0.828 1.583
ENSG00000139636 E006 4.5818732 0.0420926467 3.058734e-02 7.311806e-02 12 49097157 49097157 1 - 0.387 0.796 1.871
ENSG00000139636 E007 48.6009759 0.0180648019 4.181601e-01 5.614440e-01 12 49097158 49097261 104 - 1.594 1.672 0.264
ENSG00000139636 E008 46.3608341 0.0190172543 4.643690e-01 6.041003e-01 12 49097262 49097326 65 - 1.578 1.650 0.244
ENSG00000139636 E009 170.7904729 0.0024822250 2.978896e-05 1.774106e-04 12 49097327 49097565 239 - 2.059 2.226 0.561
ENSG00000139636 E010 183.9771714 0.0032941297 2.438247e-03 8.576443e-03 12 49097566 49097673 108 - 2.124 2.250 0.422
ENSG00000139636 E011 133.8439629 0.0006954279 3.191388e-04 1.457462e-03 12 49097674 49097699 26 - 1.979 2.113 0.449
ENSG00000139636 E012 131.8833148 0.0031225843 7.842673e-03 2.338728e-02 12 49097700 49097739 40 - 1.985 2.106 0.404
ENSG00000139636 E013 117.0870987 0.0033302209 2.130282e-03 7.628160e-03 12 49097944 49098001 58 - 1.913 2.060 0.494
ENSG00000139636 E014 170.3683091 0.0002558185 1.606878e-05 1.018598e-04 12 49098002 49098105 104 - 2.080 2.216 0.458
ENSG00000139636 E015 139.2637792 0.0002621499 2.052240e-02 5.259117e-02 12 49100388 49100454 67 - 2.038 2.118 0.267
ENSG00000139636 E016 20.4829860 0.0149844979 4.766937e-03 1.528083e-02 12 49100455 49100555 101 - 1.452 1.186 -0.927
ENSG00000139636 E017 111.2160157 0.0008701193 2.251427e-03 8.003416e-03 12 49100556 49100599 44 - 1.903 2.028 0.419
ENSG00000139636 E018 99.8036603 0.0033684878 1.685183e-02 4.460398e-02 12 49100600 49100646 47 - 1.862 1.981 0.402
ENSG00000139636 E019 27.3492375 0.0007397869 9.363059e-01 9.639398e-01 12 49100647 49100758 112 - 1.397 1.404 0.026
ENSG00000139636 E020 58.2150788 0.0004289633 1.119595e-05 7.354736e-05 12 49100759 49101102 344 - 1.859 1.652 -0.702
ENSG00000139636 E021 21.4819080 0.0009192623 9.064029e-08 9.273888e-07 12 49101103 49101128 26 - 1.544 1.148 -1.379
ENSG00000139636 E022 22.5741103 0.0008163217 1.267118e-06 1.029514e-05 12 49101129 49101168 40 - 1.544 1.193 -1.217
ENSG00000139636 E023 28.5632425 0.0006774404 2.338051e-08 2.689681e-07 12 49101169 49101213 45 - 1.649 1.287 -1.245
ENSG00000139636 E024 22.7351286 0.0008596535 2.560249e-06 1.946667e-05 12 49101214 49101249 36 - 1.544 1.205 -1.175
ENSG00000139636 E025 67.0070034 0.0038820481 7.568341e-01 8.418695e-01 12 49101250 49101263 14 - 1.767 1.786 0.064
ENSG00000139636 E026 82.2820593 0.0013109404 5.899442e-01 7.129253e-01 12 49101264 49101323 60 - 1.850 1.877 0.088
ENSG00000139636 E027 11.4191128 0.0017780160 8.353525e-04 3.385424e-03 12 49101451 49101471 21 - 1.249 0.920 -1.196
ENSG00000139636 E028 111.6233338 0.0006381596 8.673136e-01 9.186718e-01 12 49101472 49101549 78 - 2.004 2.000 -0.014
ENSG00000139636 E029 14.7754795 0.0012068801 1.014347e-09 1.503167e-08 12 49101550 49101658 109 - 1.459 0.931 -1.883
ENSG00000139636 E030 20.9863600 0.0118320144 2.302198e-07 2.181704e-06 12 49101920 49102119 200 - 1.578 1.124 -1.582
ENSG00000139636 E031 110.8091123 0.0004195131 4.242408e-01 5.672124e-01 12 49102120 49102196 77 - 1.975 2.007 0.107
ENSG00000139636 E032 20.0796558 0.0009420976 7.058500e-02 1.443154e-01 12 49102197 49102292 96 - 1.371 1.229 -0.497
ENSG00000139636 E033 100.6250870 0.0003222360 4.088805e-01 5.524931e-01 12 49102293 49102352 60 - 1.931 1.965 0.115
ENSG00000139636 E034 69.8841249 0.0004260213 4.903131e-01 6.276495e-01 12 49102353 49102376 24 - 1.777 1.811 0.115
ENSG00000139636 E035 56.0399944 0.0004236450 2.954661e-01 4.365897e-01 12 49102468 49102475 8 - 1.663 1.719 0.192
ENSG00000139636 E036 98.7147609 0.0005182802 4.086381e-01 5.522483e-01 12 49102476 49102540 65 - 1.921 1.956 0.118
ENSG00000139636 E037 97.4611816 0.0026566286 1.976512e-01 3.232845e-01 12 49102887 49102951 65 - 1.892 1.955 0.211
ENSG00000139636 E038 0.1515154 0.0425446303 2.253306e-01   12 49103081 49103090 10 - 0.170 0.000 -9.377
ENSG00000139636 E039 63.2492322 0.0055464688 6.959135e-01 7.963785e-01 12 49103091 49103102 12 - 1.767 1.747 -0.066
ENSG00000139636 E040 97.9486016 0.0034805871 4.328593e-01 5.753166e-01 12 49103103 49103159 57 - 1.963 1.931 -0.109
ENSG00000139636 E041 70.2670806 0.0062650113 1.628973e-01 2.789162e-01 12 49103687 49103700 14 - 1.850 1.777 -0.247
ENSG00000139636 E042 136.7003913 0.0004521922 4.826082e-01 6.207476e-01 12 49103701 49103813 113 - 2.100 2.078 -0.072
ENSG00000139636 E043 14.1872536 0.0036260357 3.745475e-08 4.139360e-07 12 49103814 49104379 566 - 1.437 0.941 -1.767
ENSG00000139636 E044 78.2147284 0.0003307587 6.290605e-01 7.445094e-01 12 49104448 49104469 22 - 1.829 1.852 0.078
ENSG00000139636 E045 63.0880473 0.0004080126 3.054728e-01 4.475847e-01 12 49104470 49104473 4 - 1.714 1.766 0.177
ENSG00000139636 E046 72.9249721 0.0003951736 4.402167e-01 5.819028e-01 12 49104474 49104493 20 - 1.787 1.825 0.126
ENSG00000139636 E047 64.4484316 0.0010736366 9.445487e-01 9.691961e-01 12 49104494 49104498 5 - 1.759 1.765 0.018
ENSG00000139636 E048 65.6493647 0.0012601204 7.726186e-01 8.532376e-01 12 49104499 49104502 4 - 1.781 1.768 -0.042
ENSG00000139636 E049 97.9443940 0.0003104371 3.957732e-01 5.395580e-01 12 49104503 49104551 49 - 1.966 1.935 -0.104
ENSG00000139636 E050 1.9176078 0.0074715169 1.901980e-01 3.140274e-01 12 49104719 49104745 27 - 0.588 0.367 -1.113
ENSG00000139636 E051 61.1340244 0.0004427154 4.086134e-01 5.522228e-01 12 49104746 49104750 5 - 1.770 1.732 -0.130
ENSG00000139636 E052 113.3611047 0.0007263422 3.636931e-01 5.081094e-01 12 49104751 49104885 135 - 2.030 1.998 -0.108
ENSG00000139636 E053 14.7120340 0.0592813578 2.765101e-03 9.567856e-03 12 49104886 49105232 347 - 1.389 0.989 -1.426
ENSG00000139636 E054 70.5271243 0.0004009753 5.696674e-01 6.961887e-01 12 49105924 49105957 34 - 1.823 1.799 -0.081
ENSG00000139636 E055 8.8725592 0.0019021344 1.961091e-05 1.219107e-04 12 49105958 49106080 123 - 1.225 0.769 -1.697
ENSG00000139636 E056 6.1872471 0.0140518590 3.584675e-05 2.090071e-04 12 49106423 49106510 88 - 1.128 0.589 -2.111
ENSG00000139636 E057 5.6055267 0.0078534823 8.183363e-06 5.545351e-05 12 49106511 49106544 34 - 1.113 0.536 -2.298
ENSG00000139636 E058 7.4521355 0.0276048036 1.143036e-06 9.374636e-06 12 49106545 49106588 44 - 1.249 0.588 -2.544
ENSG00000139636 E059 9.1293822 0.0069934723 1.675443e-07 1.630156e-06 12 49106589 49106653 65 - 1.293 0.716 -2.150
ENSG00000139636 E060 6.6593351 0.0026368469 7.124962e-05 3.862096e-04 12 49106654 49106690 37 - 1.128 0.657 -1.813
ENSG00000139636 E061 6.1078897 0.0026506915 9.919712e-04 3.930848e-03 12 49106691 49106746 56 - 1.062 0.657 -1.572
ENSG00000139636 E062 10.8751809 0.0015724451 6.817949e-12 1.459645e-10 12 49106747 49106960 214 - 1.397 0.717 -2.508
ENSG00000139636 E063 93.6227096 0.0002971410 5.944826e-01 7.167064e-01 12 49106961 49107045 85 - 1.938 1.919 -0.064
ENSG00000139636 E064 0.5117906 0.2545329595 2.845485e-01 4.247963e-01 12 49107046 49107062 17 - 0.291 0.088 -2.084
ENSG00000139636 E065 0.8772757 0.0182495926 6.967314e-01 7.970006e-01 12 49109727 49109881 155 - 0.292 0.221 -0.525
ENSG00000139636 E066 0.8470867 0.0144262384 1.966057e-01 3.219942e-01 12 49110008 49110205 198 - 0.387 0.159 -1.696
ENSG00000139636 E067 136.0513702 0.0033142011 7.675389e-01 8.497474e-01 12 49110484 49110668 185 - 2.090 2.082 -0.027
ENSG00000139636 E068 82.9904957 0.0063095795 1.871531e-01 3.101679e-01 12 49110669 49110812 144 - 1.918 1.850 -0.228
ENSG00000139636 E069 40.8713997 0.0005415472 1.628821e-01 2.789012e-01 12 49110813 49110900 88 - 1.625 1.545 -0.271