ENSG00000138759

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000508909 ENSG00000138759 HEK293_OSMI2_2hA HEK293_TMG_2hB FRAS1 protein_coding processed_transcript 2.865557 2.768458 3.221422 0.2846908 0.1043374 0.2178843 0.199553 0.2037723 0.3594851 0.04178228 0.07336896 0.7894411 0.06910417 0.0741000 0.1124000 0.0383000 0.616200294 0.008408004   FALSE
ENST00000512123 ENSG00000138759 HEK293_OSMI2_2hA HEK293_TMG_2hB FRAS1 protein_coding protein_coding 2.865557 2.768458 3.221422 0.2846908 0.1043374 0.2178843 1.106297 0.5876702 1.4543719 0.24834686 0.14672170 1.2928606 0.38127917 0.2027333 0.4495000 0.2467667 0.102903042 0.008408004 FALSE TRUE
MSTRG.25101.1 ENSG00000138759 HEK293_OSMI2_2hA HEK293_TMG_2hB FRAS1 protein_coding   2.865557 2.768458 3.221422 0.2846908 0.1043374 0.2178843 1.419509 1.8696246 1.1567947 0.17296439 0.11815523 -0.6878938 0.50130000 0.6841333 0.3610333 -0.3231000 0.008408004 0.008408004 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000138759 E001 9.6083559 0.0017314787 1.136374e-02 3.203519e-02 4 78057323 78057569 247 + 1.079 0.927 -0.562
ENSG00000138759 E002 7.1568444 0.0022856251 9.946567e-02 1.896675e-01 4 78057570 78057603 34 + 0.938 0.858 -0.306
ENSG00000138759 E003 10.6139938 0.0017359800 7.159744e-03 2.163788e-02 4 78057604 78057689 86 + 1.123 0.967 -0.569
ENSG00000138759 E004 23.1948986 0.0017158659 1.967151e-03 7.123322e-03 4 78057690 78058085 396 + 1.420 1.319 -0.350
ENSG00000138759 E005 6.7799976 0.0285479334 6.328138e-02 1.321742e-01 4 78065985 78066016 32 + 0.951 0.802 -0.572
ENSG00000138759 E006 2.6957958 0.0169849577 9.091740e-01 9.463117e-01 4 78068553 78068689 137 + 0.519 0.634 0.521
ENSG00000138759 E007 12.7564517 0.0214309601 4.055530e-01 5.492347e-01 4 78070462 78072107 1646 + 1.115 1.144 0.106
ENSG00000138759 E008 10.4640136 0.0044907608 5.165653e-02 1.121059e-01 4 78237510 78237617 108 + 1.089 1.005 -0.306
ENSG00000138759 E009 12.0220763 0.0014337959 3.374749e-03 1.136361e-02 4 78245233 78245325 93 + 1.171 1.005 -0.601
ENSG00000138759 E010 16.3070675 0.0089352153 1.126672e-02 3.180092e-02 4 78252392 78252551 160 + 1.282 1.166 -0.412
ENSG00000138759 E011 13.3684113 0.0340467918 7.180385e-01 8.132625e-01 4 78255242 78255375 134 + 1.122 1.191 0.246
ENSG00000138759 E012 10.5183609 0.0329423517 1.915999e-01 3.157641e-01 4 78265025 78265108 84 + 1.079 1.024 -0.201
ENSG00000138759 E013 11.2828324 0.0383325772 1.515474e-01 2.637730e-01 4 78266834 78266935 102 + 1.114 1.041 -0.266
ENSG00000138759 E014 0.0000000       4 78267239 78267240 2 +      
ENSG00000138759 E015 18.2833041 0.0011334620 7.196124e-03 2.173569e-02 4 78267241 78267432 192 + 1.316 1.224 -0.324
ENSG00000138759 E016 14.0544352 0.0012809358 1.560404e-01 2.698471e-01 4 78278655 78278744 90 + 1.171 1.166 -0.016
ENSG00000138759 E017 11.2574885 0.0015673438 5.883236e-02 1.246309e-01 4 78281398 78281433 36 + 1.106 1.039 -0.244
ENSG00000138759 E018 19.6966102 0.0114299071 4.115389e-02 9.316795e-02 4 78282820 78282967 148 + 1.332 1.276 -0.195
ENSG00000138759 E019 0.0000000       4 78282968 78283297 330 +      
ENSG00000138759 E020 20.0229429 0.0025701364 1.472569e-01 2.579603e-01 4 78284405 78284548 144 + 1.316 1.328 0.042
ENSG00000138759 E021 0.2214452 0.0380606185 4.131875e-01   4 78286392 78286404 13 + 0.000 0.151 15.010
ENSG00000138759 E022 14.4017724 0.0015682324 9.966756e-01 1.000000e+00 4 78286405 78286539 135 + 1.132 1.254 0.436
ENSG00000138759 E023 14.1197588 0.0231229607 8.547335e-01 9.101454e-01 4 78308066 78308209 144 + 1.115 1.260 0.516
ENSG00000138759 E024 14.7382290 0.0067940666 6.360258e-01 7.501568e-01 4 78315594 78315734 141 + 1.163 1.243 0.284
ENSG00000138759 E025 18.4085131 0.0349611111 9.530560e-01 9.746220e-01 4 78317368 78317508 141 + 1.233 1.350 0.408
ENSG00000138759 E026 22.5227074 0.0092323155 8.921850e-01 9.351219e-01 4 78318810 78318986 177 + 1.310 1.427 0.406
ENSG00000138759 E027 0.6277178 0.0198857819 4.033847e-01 5.471587e-01 4 78319360 78319653 294 + 0.247 0.150 -0.891
ENSG00000138759 E028 16.2651616 0.0011459028 3.867017e-01 5.308800e-01 4 78333272 78333412 141 + 1.132 1.328 0.695
ENSG00000138759 E029 16.0269944 0.0067632151 8.524661e-01 9.085737e-01 4 78337674 78337817 144 + 1.178 1.284 0.373
ENSG00000138759 E030 0.2966881 0.0277372369 2.512815e-01   4 78337818 78338037 220 + 0.179 0.000 -16.005
ENSG00000138759 E031 9.1067044 0.0018505059 2.944515e-01 4.355491e-01 4 78363513 78363665 153 + 0.998 1.005 0.024
ENSG00000138759 E032 8.4789005 0.0019970206 2.106903e-01 3.393640e-01 4 78363908 78364054 147 + 0.987 0.967 -0.072
ENSG00000138759 E033 9.2873578 0.0032866436 5.063110e-04 2.183943e-03 4 78369838 78369984 147 + 1.106 0.832 -1.022
ENSG00000138759 E034 8.4614893 0.0048957781 4.032310e-04 1.787005e-03 4 78372718 78372858 141 + 1.079 0.776 -1.148
ENSG00000138759 E035 7.9651327 0.0021496900 4.324668e-01 5.749119e-01 4 78374111 78374251 141 + 0.938 0.967 0.109
ENSG00000138759 E036 10.2395365 0.0023982063 3.681341e-03 1.224241e-02 4 78375739 78375879 141 + 1.115 0.927 -0.690
ENSG00000138759 E037 17.9956972 0.0010922863 1.191174e-05 7.777774e-05 4 78379726 78379996 271 + 1.357 1.114 -0.857
ENSG00000138759 E038 9.2244321 0.0298251168 6.706596e-02 1.384835e-01 4 78384059 78384143 85 + 1.050 0.929 -0.447
ENSG00000138759 E039 19.9835615 0.0083408341 1.467049e-04 7.329131e-04 4 78387375 78387701 327 + 1.394 1.179 -0.752
ENSG00000138759 E040 11.0484517 0.0015677669 1.125947e-02 3.178377e-02 4 78400734 78400887 154 + 1.123 0.987 -0.498
ENSG00000138759 E041 11.1443291 0.0028085304 1.254896e-01 2.278520e-01 4 78407663 78407841 179 + 1.088 1.055 -0.120
ENSG00000138759 E042 8.8923596 0.0153924709 7.872461e-03 2.345950e-02 4 78412969 78413085 117 + 1.070 0.858 -0.788
ENSG00000138759 E043 7.9286777 0.0020588767 2.639823e-02 6.474229e-02 4 78418949 78419037 89 + 0.998 0.858 -0.528
ENSG00000138759 E044 5.3092696 0.0044878897 2.848777e-03 9.819907e-03 4 78419038 78419063 26 + 0.898 0.591 -1.253
ENSG00000138759 E045 12.7242839 0.0025849567 6.800942e-06 4.697798e-05 4 78421863 78422000 138 + 1.240 0.905 -1.217
ENSG00000138759 E046 9.1133629 0.0025955996 8.211152e-02 1.628554e-01 4 78424388 78424420 33 + 1.020 0.948 -0.266
ENSG00000138759 E047 15.4136203 0.0013196890 5.498601e-04 2.346315e-03 4 78429095 78429226 132 + 1.271 1.086 -0.658
ENSG00000138759 E048 14.3344767 0.0012860454 3.780208e-03 1.252666e-02 4 78430292 78430417 126 + 1.227 1.086 -0.504
ENSG00000138759 E049 16.4581171 0.0010664817 3.004216e-03 1.027717e-02 4 78432357 78432604 248 + 1.283 1.154 -0.455
ENSG00000138759 E050 12.4364102 0.0118706405 1.406930e-01 2.489671e-01 4 78438570 78438718 149 + 1.131 1.102 -0.106
ENSG00000138759 E051 13.0679038 0.0054132370 4.262033e-02 9.585210e-02 4 78438902 78439064 163 + 1.163 1.087 -0.274
ENSG00000138759 E052 13.4742401 0.0263132047 8.894949e-03 2.601846e-02 4 78441162 78441297 136 + 1.214 1.030 -0.662
ENSG00000138759 E053 16.9236984 0.0011247036 6.912876e-04 2.867454e-03 4 78445522 78445712 191 + 1.305 1.141 -0.580
ENSG00000138759 E054 1.7682574 0.0089781585 5.442149e-01 6.747155e-01 4 78445713 78446633 921 + 0.446 0.424 -0.113
ENSG00000138759 E055 15.4982869 0.0450516274 8.322601e-02 1.646211e-01 4 78446727 78446880 154 + 1.258 1.152 -0.378
ENSG00000138759 E056 19.6367132 0.0094148012 1.430683e-03 5.409198e-03 4 78448053 78448316 264 + 1.376 1.212 -0.574
ENSG00000138759 E057 16.1861871 0.0011531538 7.338646e-06 5.027446e-05 4 78450151 78450339 189 + 1.327 1.055 -0.966
ENSG00000138759 E058 0.1472490 0.0422115865 5.721778e-01   4 78450340 78450455 116 + 0.099 0.000 -14.941
ENSG00000138759 E059 10.8452439 0.0086331712 2.222996e-03 7.914527e-03 4 78451772 78451891 120 + 1.148 0.927 -0.808
ENSG00000138759 E060 14.1673160 0.0032146358 7.249636e-02 1.475069e-01 4 78452175 78452354 180 + 1.185 1.142 -0.156
ENSG00000138759 E061 12.0157905 0.0094341586 7.557405e-02 1.524301e-01 4 78464021 78464145 125 + 1.123 1.058 -0.236
ENSG00000138759 E062 16.6572973 0.0010871555 1.842200e-02 4.806026e-02 4 78464443 78464583 141 + 1.265 1.190 -0.263
ENSG00000138759 E063 11.5485044 0.0062322168 9.191678e-04 3.681576e-03 4 78466208 78466435 228 + 1.178 0.948 -0.838
ENSG00000138759 E064 16.3291392 0.0011382178 5.015105e-02 1.094291e-01 4 78469978 78470091 114 + 1.253 1.213 -0.141
ENSG00000138759 E065 16.9655683 0.0010889760 1.067846e-03 4.193619e-03 4 78472180 78472330 151 + 1.305 1.154 -0.534
ENSG00000138759 E066 17.4614831 0.0011575749 3.169593e-01 4.597772e-01 4 78473438 78473597 160 + 1.240 1.284 0.154
ENSG00000138759 E067 19.9464810 0.0009437220 2.968662e-02 7.134536e-02 4 78475438 78475606 169 + 1.327 1.284 -0.149
ENSG00000138759 E068 19.1172566 0.0011813731 2.978138e-04 1.370713e-03 4 78477815 78478061 247 + 1.357 1.190 -0.585
ENSG00000138759 E069 24.3064596 0.0014445677 9.111410e-02 1.768738e-01 4 78479374 78479718 345 + 1.385 1.391 0.021
ENSG00000138759 E070 19.1677376 0.0011935167 1.791424e-01 3.000732e-01 4 78481804 78481964 161 + 1.283 1.302 0.069
ENSG00000138759 E071 18.7665626 0.0011162607 2.355030e-01 3.689748e-01 4 78482388 78482535 148 + 1.271 1.302 0.110
ENSG00000138759 E072 20.7742464 0.0011528579 1.360874e-04 6.861729e-04 4 78488875 78489080 206 + 1.394 1.224 -0.597
ENSG00000138759 E073 17.7435393 0.0027298717 1.199255e-02 3.351259e-02 4 78496805 78496961 157 + 1.300 1.213 -0.305
ENSG00000138759 E074 17.9727733 0.0211057122 4.899593e-02 1.073737e-01 4 78499721 78499921 201 + 1.294 1.220 -0.263
ENSG00000138759 E075 16.7097843 0.0011160929 3.761824e-01 5.205401e-01 4 78507421 78507608 188 + 1.214 1.265 0.180
ENSG00000138759 E076 27.8521952 0.0007456132 7.571522e-01 8.420620e-01 4 78508731 78509006 276 + 1.399 1.506 0.369
ENSG00000138759 E077 32.2450353 0.0006593799 3.796106e-01 5.238796e-01 4 78511274 78511506 233 + 1.480 1.554 0.254
ENSG00000138759 E078 11.8991099 0.0061483159 4.456135e-04 1.949927e-03 4 78511507 78512279 773 + 0.838 1.319 1.754
ENSG00000138759 E079 25.1333200 0.0035100029 3.972149e-01 5.409900e-01 4 78513392 78513552 161 + 1.376 1.440 0.222
ENSG00000138759 E080 22.8017358 0.0010258017 9.424647e-01 9.678766e-01 4 78515799 78516013 215 + 1.305 1.426 0.421
ENSG00000138759 E081 23.0687372 0.0200756048 9.895895e-01 9.975299e-01 4 78519331 78519481 151 + 1.305 1.446 0.487
ENSG00000138759 E082 21.4172506 0.0090005924 8.237052e-01 8.889287e-01 4 78521523 78521630 108 + 1.283 1.395 0.392
ENSG00000138759 E083 19.7104703 0.0010333575 7.602960e-01 8.444528e-01 4 78522649 78522808 160 + 1.259 1.361 0.357
ENSG00000138759 E084 18.1457084 0.0014245586 9.551032e-02 1.836521e-01 4 78526541 78526657 117 + 1.283 1.274 -0.030
ENSG00000138759 E085 23.6608016 0.0016361733 1.448709e-01 2.546637e-01 4 78534449 78534615 167 + 1.376 1.398 0.077
ENSG00000138759 E086 23.4814712 0.0131578648 2.477725e-01 3.833037e-01 4 78536995 78537200 206 + 1.371 1.393 0.075
ENSG00000138759 E087 22.7241455 0.0008457052 6.378675e-01 7.516551e-01 4 78539294 78539440 147 + 1.327 1.419 0.321
ENSG00000138759 E088 551.2424861 0.0109554678 4.944135e-24 4.929745e-22 4 78540531 78544269 3739 + 2.425 2.963 1.792