ENSG00000138002

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000260570 ENSG00000138002 HEK293_OSMI2_2hA HEK293_TMG_2hB IFT172 protein_coding protein_coding 15.06631 18.33946 11.80175 1.541045 0.2979681 -0.6355154 5.765286 4.797200 5.950418 0.2788165 0.4741831 0.3102166 0.40971667 0.26290000 0.5065667 0.24366667 6.962342e-04 2.213842e-28 FALSE TRUE
ENST00000420854 ENSG00000138002 HEK293_OSMI2_2hA HEK293_TMG_2hB IFT172 protein_coding nonsense_mediated_decay 15.06631 18.33946 11.80175 1.541045 0.2979681 -0.6355154 1.190077 3.077302 0.000000 0.8735332 0.0000000 -8.2702027 0.06585000 0.16253333 0.0000000 -0.16253333 5.194318e-15 2.213842e-28 TRUE TRUE
ENST00000509128 ENSG00000138002 HEK293_OSMI2_2hA HEK293_TMG_2hB IFT172 protein_coding nonsense_mediated_decay 15.06631 18.33946 11.80175 1.541045 0.2979681 -0.6355154 2.296952 5.597378 0.000000 0.9479289 0.0000000 -9.1311824 0.12805417 0.30310000 0.0000000 -0.30310000 2.213842e-28 2.213842e-28 TRUE TRUE
ENST00000675690 ENSG00000138002 HEK293_OSMI2_2hA HEK293_TMG_2hB IFT172 protein_coding protein_coding 15.06631 18.33946 11.80175 1.541045 0.2979681 -0.6355154 1.275237 1.420660 1.834489 0.3360723 0.6137369 0.3665408 0.08785000 0.07920000 0.1532333 0.07403333 4.848250e-01 2.213842e-28 FALSE TRUE
MSTRG.18129.4 ENSG00000138002 HEK293_OSMI2_2hA HEK293_TMG_2hB IFT172 protein_coding   15.06631 18.33946 11.80175 1.541045 0.2979681 -0.6355154 1.407467 1.605715 1.414338 0.3414959 0.5359165 -0.1818804 0.09541667 0.08893333 0.1214333 0.03250000 8.521995e-01 2.213842e-28 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000138002 E001 0.9619687 0.0136968632 8.358108e-01 8.973438e-01 2 27444377 27444397 21 - 0.314 0.278 -0.240
ENSG00000138002 E002 5.5063809 0.0040134237 7.651742e-02 1.539239e-01 2 27444398 27444405 8 - 0.657 0.897 0.961
ENSG00000138002 E003 12.6844058 0.0020997740 2.740824e-04 1.274305e-03 2 27444406 27444415 10 - 0.888 1.256 1.344
ENSG00000138002 E004 30.6831449 0.0111168858 5.092193e-04 2.194047e-03 2 27444416 27444460 45 - 1.303 1.598 1.016
ENSG00000138002 E005 56.2604068 0.0195103709 1.696908e-03 6.273513e-03 2 27444461 27444521 61 - 1.573 1.847 0.927
ENSG00000138002 E006 46.1816280 0.0161821598 2.430930e-03 8.554992e-03 2 27445014 27445019 6 - 1.502 1.759 0.875
ENSG00000138002 E007 49.4544969 0.0167983105 8.055207e-04 3.278340e-03 2 27445020 27445042 23 - 1.511 1.796 0.968
ENSG00000138002 E008 78.9027980 0.0068478420 2.906053e-06 2.181232e-05 2 27445043 27445105 63 - 1.718 1.993 0.928
ENSG00000138002 E009 0.8855944 0.2730412394 7.824640e-01 8.603298e-01 2 27445291 27445295 5 - 0.232 0.331 0.696
ENSG00000138002 E010 59.6791349 0.0067830241 7.895682e-05 4.229643e-04 2 27445296 27445306 11 - 1.620 1.868 0.842
ENSG00000138002 E011 138.5563505 0.0053079930 5.064795e-08 5.453621e-07 2 27445307 27445443 137 - 1.971 2.231 0.871
ENSG00000138002 E012 78.2282891 0.0008075149 1.851486e-04 8.997960e-04 2 27445444 27445449 6 - 1.798 1.959 0.540
ENSG00000138002 E013 1.7725343 0.0095742730 3.134146e-01 4.560036e-01 2 27445553 27445629 77 - 0.314 0.491 0.985
ENSG00000138002 E014 120.1817005 0.0017300675 9.142753e-07 7.653854e-06 2 27445745 27445843 99 - 1.960 2.151 0.641
ENSG00000138002 E015 78.1686131 0.0043690169 2.030145e-03 7.320229e-03 2 27445929 27445940 12 - 1.794 1.956 0.545
ENSG00000138002 E016 99.9998187 0.0047550847 1.487549e-04 7.416098e-04 2 27445941 27445988 48 - 1.881 2.069 0.633
ENSG00000138002 E017 1.0435544 0.0309262558 1.798337e-01 3.009705e-01 2 27445989 27446259 271 - 0.442 0.203 -1.567
ENSG00000138002 E018 132.5534096 0.0007837670 5.540329e-09 7.173310e-08 2 27446260 27446355 96 - 1.997 2.197 0.669
ENSG00000138002 E019 139.3248336 0.0002853989 4.023965e-11 7.583090e-10 2 27447515 27447634 120 - 2.011 2.220 0.700
ENSG00000138002 E020 0.8867258 0.0307148786 2.385900e-01 3.724991e-01 2 27447635 27447657 23 - 0.131 0.342 1.762
ENSG00000138002 E021 130.8923140 0.0027316164 8.676192e-07 7.301993e-06 2 27447812 27447922 111 - 1.987 2.188 0.670
ENSG00000138002 E022 103.6950162 0.0004348174 1.643280e-06 1.302026e-05 2 27448915 27449031 117 - 1.902 2.079 0.592
ENSG00000138002 E023 97.5781090 0.0003729487 3.863644e-08 4.260263e-07 2 27449294 27449380 87 - 1.860 2.067 0.697
ENSG00000138002 E024 2.7218332 0.0054955168 2.877733e-01 4.283027e-01 2 27449381 27449498 118 - 0.657 0.491 -0.754
ENSG00000138002 E025 90.2450870 0.0029408506 1.508874e-02 4.068839e-02 2 27449499 27449562 64 - 1.888 2.001 0.378
ENSG00000138002 E026 112.8807365 0.0066425479 5.467470e-03 1.720162e-02 2 27449691 27449800 110 - 1.962 2.107 0.488
ENSG00000138002 E027 92.2755287 0.0003239240 3.013983e-04 1.385293e-03 2 27449998 27450096 99 - 1.879 2.017 0.465
ENSG00000138002 E028 0.5985731 0.0254594495 2.417064e-01 3.761989e-01 2 27450097 27450659 563 - 0.314 0.114 -1.827
ENSG00000138002 E029 0.0000000       2 27453137 27453137 1 -      
ENSG00000138002 E030 0.5546650 0.0219117930 6.670427e-01 7.743782e-01 2 27453138 27453270 133 - 0.132 0.204 0.763
ENSG00000138002 E031 84.8094472 0.0011074014 2.218758e-04 1.057451e-03 2 27453384 27453513 130 - 1.827 1.982 0.523
ENSG00000138002 E032 69.3180265 0.0007514176 1.854460e-03 6.771556e-03 2 27453630 27453739 110 - 1.752 1.892 0.472
ENSG00000138002 E033 5.1304662 0.0233975280 2.330568e-01 3.660505e-01 2 27453740 27453981 242 - 0.867 0.691 -0.702
ENSG00000138002 E034 103.2903292 0.0153809648 6.684097e-02 1.381228e-01 2 27453982 27454162 181 - 1.933 2.056 0.412
ENSG00000138002 E035 10.8130446 0.0410359566 8.769940e-02 1.716398e-01 2 27454163 27454353 191 - 1.189 0.946 -0.883
ENSG00000138002 E036 71.8054778 0.0142052984 2.121585e-01 3.410764e-01 2 27454354 27454418 65 - 1.803 1.886 0.281
ENSG00000138002 E037 80.4128960 0.0210262134 4.638698e-01 6.036457e-01 2 27454567 27454660 94 - 1.872 1.922 0.170
ENSG00000138002 E038 95.0966334 0.0025744387 2.005915e-01 3.269393e-01 2 27456511 27456653 143 - 1.943 1.998 0.187
ENSG00000138002 E039 99.7105439 0.0003423827 4.008271e-01 5.445082e-01 2 27457639 27457755 117 - 1.978 2.010 0.106
ENSG00000138002 E040 75.3215390 0.0003215831 7.104936e-02 1.450867e-01 2 27457841 27457892 52 - 1.919 1.848 -0.240
ENSG00000138002 E041 74.2340880 0.0004025313 1.328727e-01 2.381038e-01 2 27457893 27457976 84 - 1.906 1.846 -0.202
ENSG00000138002 E042 7.7358522 0.0054750500 3.035054e-04 1.393625e-03 2 27457977 27458125 149 - 1.138 0.715 -1.604
ENSG00000138002 E043 78.0502724 0.0003419826 3.588940e-01 5.032625e-01 2 27458126 27458223 98 - 1.912 1.877 -0.118
ENSG00000138002 E044 66.2921020 0.0003964036 4.380896e-01 5.799611e-01 2 27458779 27458868 90 - 1.845 1.813 -0.106
ENSG00000138002 E045 0.9317929 0.0650789119 3.303447e-01 4.739399e-01 2 27458869 27459377 509 - 0.383 0.203 -1.245
ENSG00000138002 E046 67.3740574 0.0003755756 5.570292e-01 6.855374e-01 2 27459378 27459522 145 - 1.845 1.821 -0.079
ENSG00000138002 E047 61.5486359 0.0003951528 3.673633e-02 8.496628e-02 2 27459709 27459829 121 - 1.845 1.753 -0.308
ENSG00000138002 E048 54.8670852 0.0051007683 1.108532e-02 3.137071e-02 2 27461015 27461093 79 - 1.824 1.677 -0.497
ENSG00000138002 E049 95.5435436 0.0003939963 7.441480e-05 4.013454e-04 2 27461269 27461517 249 - 2.055 1.912 -0.480
ENSG00000138002 E050 68.2132428 0.0044562079 1.564835e-02 4.195430e-02 2 27461759 27461836 78 - 1.902 1.773 -0.435
ENSG00000138002 E051 77.8697569 0.0004253128 5.382746e-04 2.303155e-03 2 27462701 27462793 93 - 1.965 1.827 -0.463
ENSG00000138002 E052 71.5513023 0.0003577173 5.114057e-05 2.874989e-04 2 27463097 27463181 85 - 1.946 1.780 -0.559
ENSG00000138002 E053 2.7927835 0.1041257509 1.722863e-01 2.911894e-01 2 27463559 27463659 101 - 0.719 0.445 -1.246
ENSG00000138002 E054 13.5388106 0.0012654832 4.002997e-05 2.306996e-04 2 27463660 27464870 1211 - 1.333 0.959 -1.342
ENSG00000138002 E055 0.3268771 0.0296943544 9.031840e-01   2 27464871 27464957 87 - 0.131 0.114 -0.239
ENSG00000138002 E056 0.4418608 0.0267071688 6.278288e-02 1.313459e-01 2 27464958 27465110 153 - 0.314 0.000 -13.585
ENSG00000138002 E057 0.2924217 0.0270726388 1.606781e-01   2 27465111 27465201 91 - 0.232 0.000 -13.000
ENSG00000138002 E058 3.1064351 0.0312247120 1.686521e-01 2.864166e-01 2 27465202 27465410 209 - 0.720 0.492 -1.012
ENSG00000138002 E059 79.1942818 0.0029487893 6.126897e-03 1.894191e-02 2 27465411 27465518 108 - 1.968 1.841 -0.430
ENSG00000138002 E060 76.5289820 0.0053492141 5.041881e-03 1.604463e-02 2 27465746 27465882 137 - 1.965 1.815 -0.504
ENSG00000138002 E061 0.3729606 0.0348512911 9.056885e-01 9.440075e-01 2 27465883 27466081 199 - 0.132 0.114 -0.236
ENSG00000138002 E062 0.8148214 0.0273731762 1.260211e-01 2.286032e-01 2 27466752 27466844 93 - 0.383 0.114 -2.237
ENSG00000138002 E063 1.2910213 0.0357218653 3.603207e-01 5.046493e-01 2 27470781 27470812 32 - 0.232 0.399 1.091
ENSG00000138002 E064 2.9442182 0.0051176390 1.578255e-02 4.224416e-02 2 27470813 27470927 115 - 0.314 0.715 1.983
ENSG00000138002 E065 63.6800028 0.0009889803 7.386995e-03 2.222398e-02 2 27470928 27471029 102 - 1.870 1.749 -0.409
ENSG00000138002 E066 44.1393355 0.0005023755 5.023335e-03 1.599529e-02 2 27471030 27471095 66 - 1.727 1.581 -0.495
ENSG00000138002 E067 4.5608861 0.0038124402 1.507178e-01 2.626485e-01 2 27471096 27471232 137 - 0.621 0.825 0.837
ENSG00000138002 E068 9.7834824 0.0073053116 2.885365e-01 4.291426e-01 2 27471233 27471686 454 - 0.961 1.081 0.442
ENSG00000138002 E069 6.4526559 0.0026480617 7.912463e-02 1.581160e-01 2 27471687 27472011 325 - 0.720 0.944 0.876
ENSG00000138002 E070 1.7057119 0.1128215934 3.952407e-01 5.390569e-01 2 27472012 27472065 54 - 0.314 0.490 0.980
ENSG00000138002 E071 4.4532772 0.0035563271 9.216748e-02 1.785071e-01 2 27472066 27472249 184 - 0.583 0.825 1.007
ENSG00000138002 E072 62.8024896 0.0063563131 7.922012e-02 1.582640e-01 2 27472250 27472362 113 - 1.856 1.753 -0.346
ENSG00000138002 E073 0.1472490 0.0434615897 4.223866e-01   2 27474772 27475493 722 - 0.131 0.000 -12.000
ENSG00000138002 E074 0.1472490 0.0434615897 4.223866e-01   2 27475494 27475825 332 - 0.131 0.000 -12.000
ENSG00000138002 E075 0.0000000       2 27475826 27476640 815 -      
ENSG00000138002 E076 49.9301788 0.0017896271 4.509784e-03 1.457066e-02 2 27476641 27476726 86 - 1.781 1.633 -0.502
ENSG00000138002 E077 0.3332198 0.0302945720 9.022089e-01   2 27476727 27477216 490 - 0.132 0.114 -0.239
ENSG00000138002 E078 60.4565478 0.0016309392 1.531923e-04 7.612282e-04 2 27477217 27477320 104 - 1.881 1.700 -0.611
ENSG00000138002 E079 0.1472490 0.0434615897 4.223866e-01   2 27477321 27477558 238 - 0.131 0.000 -12.000
ENSG00000138002 E080 51.4954708 0.0004438149 4.457350e-05 2.542014e-04 2 27477559 27477612 54 - 1.822 1.626 -0.663
ENSG00000138002 E081 78.7018324 0.0101930100 5.609966e-04 2.388456e-03 2 27477995 27478156 162 - 2.010 1.798 -0.716
ENSG00000138002 E082 65.4235695 0.0118767745 2.554723e-03 8.926640e-03 2 27479509 27479604 96 - 1.926 1.724 -0.682
ENSG00000138002 E083 68.0153552 0.0023251804 1.968494e-08 2.298602e-07 2 27480026 27480149 124 - 1.971 1.705 -0.899
ENSG00000138002 E084 55.9612342 0.0020449649 3.032659e-09 4.110526e-08 2 27481046 27481126 81 - 1.900 1.598 -1.022
ENSG00000138002 E085 62.5914332 0.0104301907 2.407934e-05 1.466520e-04 2 27481127 27481260 134 - 1.937 1.658 -0.942
ENSG00000138002 E086 0.2965864 0.1423289501 2.861045e-01   2 27483037 27483288 252 - 0.000 0.201 12.224
ENSG00000138002 E087 58.8232615 0.0149772390 2.291130e-05 1.400844e-04 2 27483289 27483376 88 - 1.927 1.614 -1.057
ENSG00000138002 E088 0.1482932 0.0413148405 5.637834e-01   2 27483377 27483579 203 - 0.000 0.114 11.243
ENSG00000138002 E089 59.7987976 0.0029803556 1.703308e-06 1.345480e-05 2 27483580 27483659 80 - 1.904 1.657 -0.836
ENSG00000138002 E090 0.0000000       2 27483660 27483871 212 -      
ENSG00000138002 E091 37.4574903 0.0005779773 1.935130e-07 1.859333e-06 2 27483872 27483882 11 - 1.727 1.432 -1.006
ENSG00000138002 E092 48.6451137 0.0021734108 2.605670e-09 3.577854e-08 2 27483883 27483937 55 - 1.851 1.530 -1.089
ENSG00000138002 E093 0.2924217 0.0270726388 1.606781e-01   2 27483938 27484027 90 - 0.232 0.000 -13.000
ENSG00000138002 E094 0.4396707 0.0266344030 6.279736e-02 1.313718e-01 2 27484028 27484106 79 - 0.314 0.000 -13.585
ENSG00000138002 E095 0.5891098 0.0183054282 2.524567e-02 6.237728e-02 2 27484107 27484226 120 - 0.383 0.000 -14.000
ENSG00000138002 E096 38.4275033 0.0036741377 1.528369e-08 1.820350e-07 2 27484227 27484266 40 - 1.765 1.412 -1.206
ENSG00000138002 E097 0.5149242 0.2485152995 7.288764e-01 8.212214e-01 2 27484267 27484480 214 - 0.132 0.205 0.766
ENSG00000138002 E098 1.1352526 0.1465121107 1.754064e-01 2.951982e-01 2 27484481 27485017 537 - 0.131 0.403 2.114
ENSG00000138002 E099 61.8629117 0.0059793182 1.780080e-09 2.518715e-08 2 27485018 27485130 113 - 1.963 1.614 -1.179
ENSG00000138002 E100 0.0000000       2 27485131 27485359 229 -      
ENSG00000138002 E101 64.6960480 0.0135728427 9.059444e-06 6.081156e-05 2 27485360 27485503 144 - 1.968 1.654 -1.060
ENSG00000138002 E102 0.0000000       2 27486159 27486242 84 -      
ENSG00000138002 E103 0.0000000       2 27486569 27486735 167 -      
ENSG00000138002 E104 37.7333403 0.0223990326 2.206307e-04 1.052127e-03 2 27489615 27489662 48 - 1.747 1.413 -1.140
ENSG00000138002 E105 29.5412720 0.0497911695 1.106035e-02 3.130847e-02 2 27489663 27489805 143 - 1.631 1.329 -1.036