• ENSG00000137161
  • 1 Isoform Switch
  • 2 Differential Exon Usage

ENSG00000137161

1 Isoform Switch

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

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isoform_idColumn filter
gene_idColumn filter
condition_1Column filter
condition_2Column filter
gene_nameColumn filter
gene_biotypeColumn filter
iso_biotypeColumn filter
gene_overall_meanColumn filter
gene_value_1Column filter
gene_value_2Column filter
gene_stderr_1Column filter
gene_stderr_2Column filter
gene_log2_fold_changeColumn filter
iso_overall_meanColumn filter
iso_value_1Column filter
iso_value_2Column filter
iso_stderr_1Column filter
iso_stderr_2Column filter
iso_log2_fold_changeColumn filter
IF_overallColumn filter
IF1Column filter
IF2Column filter
dIFColumn filter
isoform_switch_q_valueColumn filter
gene_switch_q_valueColumn filter
PTCColumn filter
codingPotentialColumn filter
ENST00000372836 ENSG00000137161 HEK293_OSMI2_2hA HEK293_TMG_2hB CNPY3 protein_coding protein_coding 41.8646 72.35635 28.56102 1.313686 1.303393 -1.340766 25.547305 43.835389 17.650854 0.6417710 0.3691432 -1.3118700 0.61630417 0.60590000 0.6200000 0.01410000 8.767740e-01 4.332505e-05 FALSE  
MSTRG.28306.1 ENSG00000137161 HEK293_OSMI2_2hA HEK293_TMG_2hB CNPY3 protein_coding   41.8646 72.35635 28.56102 1.313686 1.303393 -1.340766 4.871746 5.477972 4.238882 0.1802415 0.1550900 -0.3691899 0.12409167 0.07583333 0.1495000 0.07366667 4.332505e-05 4.332505e-05 FALSE  
MSTRG.28306.2 ENSG00000137161 HEK293_OSMI2_2hA HEK293_TMG_2hB CNPY3 protein_coding   41.8646 72.35635 28.56102 1.313686 1.303393 -1.340766 7.304400 14.520308 3.635017 0.9749806 0.6832154 -1.9950676 0.16489167 0.20036667 0.1256667 -0.07470000 1.021982e-01 4.332505e-05 FALSE  
MSTRG.28306.3 ENSG00000137161 HEK293_OSMI2_2hA HEK293_TMG_2hB CNPY3 protein_coding   41.8646 72.35635 28.56102 1.313686 1.303393 -1.340766 4.141150 8.522677 3.036268 0.4372771 0.6852557 -1.4859557 0.09472083 0.11790000 0.1048667 -0.01303333 8.036618e-01 4.332505e-05 FALSE  
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

All exons whithin this gene region are shown and numbering below.

All exons whithin this gene region are shown and numbering below.

All exons whithin this gene region are shown and numbering below.

All isoforms whithin this gene region are shown below.

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groupIDColumn filter
featureIDColumn filter
exonBaseMeanColumn filter
dispersionColumn filter
pvalueColumn filter
padjColumn filter
seqnamesColumn filter
startColumn filter
endColumn filter
widthColumn filter
strandColumn filter
HEK293_TMG_2hBColumn filter
HEK293_OSMI2_2hAColumn filter
log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hBColumn filter
ENSG00000137161 E001 298.11660 0.0040750303 0.3395075388 0.483428297 6 42929480 42929721 242 + 2.369 2.414 0.150
ENSG00000137161 E002 291.78337 0.0011520738 0.0848416086 0.167153595 6 42934475 42934598 124 + 2.422 2.387 -0.117
ENSG00000137161 E003 75.50914 0.0009615865 0.0006554901 0.002735979 6 42935412 42935473 62 + 1.917 1.773 -0.484
ENSG00000137161 E004 466.70009 0.0001544284 0.5365817660 0.668322162 6 42935574 42935670 97 + 2.599 2.600 0.004
ENSG00000137161 E005 541.97119 0.0001382360 0.0032440342 0.010984317 6 42937717 42937839 123 + 2.691 2.655 -0.119
ENSG00000137161 E006 568.04921 0.0002679075 0.3150773519 0.457833183 6 42938090 42938207 118 + 2.689 2.685 -0.014
ENSG00000137161 E007 1088.27078 0.0012765937 0.0006436799 0.002693271 6 42938568 42939294 727 + 2.914 2.982 0.224