ENSG00000137073

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000379238 ENSG00000137073 HEK293_OSMI2_2hA HEK293_TMG_2hB UBAP2 protein_coding protein_coding 32.13371 37.88608 28.2402 1.334184 1.788786 -0.4237874 17.418526 22.5004546 15.1098616 1.5334130 0.1459801 -0.5741503 0.53733333 0.59276667 0.53880000 -0.053966667 5.802485e-01 4.840718e-06 FALSE TRUE
ENST00000474372 ENSG00000137073 HEK293_OSMI2_2hA HEK293_TMG_2hB UBAP2 protein_coding processed_transcript 32.13371 37.88608 28.2402 1.334184 1.788786 -0.4237874 2.133586 1.9671939 1.5590689 0.2630980 0.2558807 -0.3335457 0.06720833 0.05160000 0.05646667 0.004866667 9.535273e-01 4.840718e-06 FALSE FALSE
ENST00000682949 ENSG00000137073 HEK293_OSMI2_2hA HEK293_TMG_2hB UBAP2 protein_coding retained_intron 32.13371 37.88608 28.2402 1.334184 1.788786 -0.4237874 2.767245 7.0873724 0.7097883 1.5534471 0.1111680 -3.3016405 0.08097917 0.18996667 0.02490000 -0.165066667 4.840718e-06 4.840718e-06 TRUE TRUE
MSTRG.32567.14 ENSG00000137073 HEK293_OSMI2_2hA HEK293_TMG_2hB UBAP2 protein_coding   32.13371 37.88608 28.2402 1.334184 1.788786 -0.4237874 1.461171 0.9320793 2.0052873 0.4873675 1.1349515 1.0970652 0.04647917 0.02373333 0.07496667 0.051233333 8.665468e-01 4.840718e-06 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000137073 E001 14.6274529 0.0351838730 7.875701e-02 1.575222e-01 9 33921693 33921699 7 - 0.992 1.231 0.860
ENSG00000137073 E002 37.2777213 0.0229665278 1.170227e-04 6.001681e-04 9 33921700 33921707 8 - 1.251 1.655 1.395
ENSG00000137073 E003 58.3792385 0.0216874684 1.249827e-03 4.809586e-03 9 33921708 33921723 16 - 1.523 1.825 1.024
ENSG00000137073 E004 67.1525591 0.0173633594 2.210644e-04 1.054062e-03 9 33921724 33921728 5 - 1.575 1.887 1.055
ENSG00000137073 E005 215.3145325 0.0102343377 9.424058e-10 1.404026e-08 9 33921729 33921858 130 - 2.036 2.399 1.215
ENSG00000137073 E006 122.5396916 0.0090523925 1.561524e-09 2.234505e-08 9 33921859 33921879 21 - 1.783 2.159 1.263
ENSG00000137073 E007 97.4497182 0.0093817301 5.776717e-09 7.458472e-08 9 33921880 33921880 1 - 1.678 2.062 1.294
ENSG00000137073 E008 113.1733778 0.0095507559 6.420362e-09 8.209918e-08 9 33921881 33921891 11 - 1.752 2.125 1.254
ENSG00000137073 E009 523.8758291 0.0037145453 1.827590e-16 7.611154e-15 9 33921892 33922140 249 - 2.483 2.770 0.955
ENSG00000137073 E010 333.4328997 0.0041981634 1.705338e-11 3.417657e-10 9 33922141 33922237 97 - 2.305 2.570 0.885
ENSG00000137073 E011 218.0722275 0.0057366730 3.454095e-10 5.562934e-09 9 33922238 33922261 24 - 2.097 2.393 0.990
ENSG00000137073 E012 187.8273797 0.0024789375 1.551645e-13 4.291933e-12 9 33922262 33922291 30 - 2.039 2.327 0.963
ENSG00000137073 E013 183.2126507 0.0003670707 5.035674e-21 3.643977e-19 9 33922292 33922348 57 - 2.019 2.315 0.991
ENSG00000137073 E014 107.2584901 0.0003072742 1.330455e-09 1.927436e-08 9 33922349 33922376 28 - 1.834 2.073 0.802
ENSG00000137073 E015 375.8503631 0.0014756999 4.872373e-08 5.265582e-07 9 33922377 33922599 223 - 2.442 2.594 0.508
ENSG00000137073 E016 3.4999910 0.0950093333 8.836072e-01 9.295532e-01 9 33922600 33922686 87 - 0.595 0.636 0.181
ENSG00000137073 E017 380.8177643 0.0003160328 4.159240e-08 4.558872e-07 9 33922687 33922878 192 - 2.472 2.591 0.397
ENSG00000137073 E018 2.5755266 0.0065497500 9.813635e-01 9.923850e-01 9 33922879 33922965 87 - 0.547 0.546 -0.002
ENSG00000137073 E019 212.6552406 0.0001942747 1.268077e-05 8.228579e-05 9 33922966 33923033 68 - 2.218 2.339 0.402
ENSG00000137073 E020 22.6538381 0.0008384876 3.909216e-01 5.348651e-01 9 33923034 33923161 128 - 1.390 1.331 -0.205
ENSG00000137073 E021 10.8897278 0.0043006567 3.569776e-01 5.013926e-01 9 33923162 33923185 24 - 1.106 1.014 -0.335
ENSG00000137073 E022 201.7803947 0.0035078489 1.910896e-02 4.957664e-02 9 33923186 33923245 60 - 2.211 2.307 0.323
ENSG00000137073 E023 214.3641661 0.0049952313 5.658369e-01 6.928735e-01 9 33923246 33923293 48 - 2.317 2.298 -0.064
ENSG00000137073 E024 13.7649916 0.0586853667 1.075123e-03 4.218524e-03 9 33923294 33923378 85 - 1.406 0.926 -1.720
ENSG00000137073 E025 296.6983017 0.0005483886 5.123816e-01 6.472831e-01 9 33923379 33923478 100 - 2.451 2.440 -0.037
ENSG00000137073 E026 196.4840586 0.0023365981 8.744433e-01 9.232864e-01 9 33923795 33923824 30 - 2.259 2.270 0.035
ENSG00000137073 E027 321.8476457 0.0004120337 2.671063e-01 4.053846e-01 9 33923825 33924000 176 - 2.494 2.474 -0.067
ENSG00000137073 E028 170.5196320 0.0017598463 2.077536e-01 3.357813e-01 9 33924206 33924284 79 - 2.172 2.220 0.163
ENSG00000137073 E029 138.7908299 0.0002883276 1.052133e-01 1.984166e-01 9 33926617 33926664 48 - 2.077 2.134 0.190
ENSG00000137073 E030 139.4008599 0.0002684762 4.334440e-01 5.758634e-01 9 33926989 33927026 38 - 2.098 2.128 0.098
ENSG00000137073 E031 138.8208296 0.0002782421 7.771493e-01 8.565829e-01 9 33927027 33927080 54 - 2.107 2.120 0.044
ENSG00000137073 E032 2.1066740 0.0075125195 2.326200e-01 3.655644e-01 9 33927081 33927796 716 - 0.596 0.400 -0.960
ENSG00000137073 E033 262.3911294 0.0007616182 6.567938e-04 2.740515e-03 9 33927797 33927992 196 - 2.444 2.361 -0.277
ENSG00000137073 E034 4.0600945 0.1642785845 9.876009e-01 9.963172e-01 9 33927993 33928022 30 - 0.681 0.668 -0.052
ENSG00000137073 E035 1.8906411 0.0081333665 4.236424e-02 9.538487e-02 9 33928023 33928371 349 - 0.640 0.303 -1.738
ENSG00000137073 E036 9.7523270 0.0017687450 2.574186e-02 6.340811e-02 9 33928372 33928612 241 - 1.147 0.919 -0.834
ENSG00000137073 E037 3.6868326 0.0310871280 8.533657e-01 9.092408e-01 9 33928613 33928835 223 - 0.640 0.676 0.156
ENSG00000137073 E038 154.9800689 0.0003713392 2.343524e-06 1.795719e-05 9 33932562 33932628 67 - 2.250 2.114 -0.457
ENSG00000137073 E039 198.6974165 0.0003657229 3.735607e-03 1.239860e-02 9 33933490 33933628 139 - 2.318 2.245 -0.247
ENSG00000137073 E040 6.8121811 0.0356532527 5.267414e-01 6.599316e-01 9 33933629 33933646 18 - 0.933 0.845 -0.338
ENSG00000137073 E041 4.2982816 0.0434551901 9.996167e-02 1.904356e-01 9 33933647 33933821 175 - 0.864 0.603 -1.070
ENSG00000137073 E042 36.5493915 0.0081787719 8.294381e-01 8.929064e-01 9 33934054 33934295 242 - 1.555 1.543 -0.040
ENSG00000137073 E043 19.9284958 0.0123790836 2.093216e-01 3.377251e-01 9 33934296 33934376 81 - 1.367 1.254 -0.395
ENSG00000137073 E044 0.8962933 0.0777997724 2.245547e-03 7.984911e-03 9 33935322 33935403 82 - 0.547 0.000 -12.278
ENSG00000137073 E045 3.3404550 0.0309925155 2.071982e-03 7.447130e-03 9 33935404 33935838 435 - 0.888 0.398 -2.163
ENSG00000137073 E046 96.6931848 0.0002936050 1.062445e-02 3.027270e-02 9 33935839 33935858 20 - 2.019 1.928 -0.304
ENSG00000137073 E047 88.1203544 0.0003229673 1.070371e-02 3.046278e-02 9 33935859 33935878 20 - 1.982 1.887 -0.319
ENSG00000137073 E048 253.2591145 0.0017805746 1.839726e-04 8.948844e-04 9 33941649 33941862 214 - 2.446 2.339 -0.358
ENSG00000137073 E049 243.5168381 0.0033911870 1.439276e-03 5.437236e-03 9 33943420 33943589 170 - 2.430 2.321 -0.362
ENSG00000137073 E050 315.6942877 0.0036703015 2.450869e-05 1.489957e-04 9 33944365 33944639 275 - 2.562 2.421 -0.470
ENSG00000137073 E051 269.3533420 0.0002121915 2.768556e-16 1.127971e-14 9 33948374 33948587 214 - 2.515 2.337 -0.596
ENSG00000137073 E052 2.5087914 0.0060505505 8.293771e-01 8.928661e-01 9 33948588 33948966 379 - 0.547 0.514 -0.153
ENSG00000137073 E053 235.9117165 0.0010281220 1.051121e-14 3.446975e-13 9 33953285 33953474 190 - 2.474 2.266 -0.692
ENSG00000137073 E054 109.9908085 0.0002884700 1.814455e-07 1.753254e-06 9 33956079 33956146 68 - 2.128 1.953 -0.586
ENSG00000137073 E055 152.2235417 0.0008359776 1.150508e-10 2.009778e-09 9 33960826 33960878 53 - 2.281 2.082 -0.665
ENSG00000137073 E056 149.3996260 0.0027910945 7.125537e-06 4.896839e-05 9 33963726 33963791 66 - 2.254 2.087 -0.560
ENSG00000137073 E057 147.3666896 0.0056588122 4.234052e-05 2.426428e-04 9 33971651 33971737 87 - 2.257 2.074 -0.614
ENSG00000137073 E058 74.9404307 0.0114505821 9.997739e-04 3.957297e-03 9 33971738 33971754 17 - 1.980 1.772 -0.700
ENSG00000137073 E059 112.5854344 0.0076284130 1.681530e-07 1.635658e-06 9 33973183 33973237 55 - 2.190 1.916 -0.918
ENSG00000137073 E060 141.1852165 0.0094434485 1.193623e-07 1.195560e-06 9 33986760 33986837 78 - 2.294 2.008 -0.957
ENSG00000137073 E061 200.1054109 0.0108885863 4.646775e-07 4.136892e-06 9 33988973 33989126 154 - 2.441 2.165 -0.921
ENSG00000137073 E062 0.7353121 0.1242382015 6.340020e-01 7.485807e-01 9 33994481 33996222 1742 - 0.265 0.180 -0.712
ENSG00000137073 E063 164.9329822 0.0082664916 2.036730e-08 2.371412e-07 9 33996223 33996333 111 - 2.361 2.078 -0.945
ENSG00000137073 E064 1.9080308 0.0740294677 2.089445e-01 3.372604e-01 9 33996334 33996477 144 - 0.595 0.354 -1.223
ENSG00000137073 E065 3.8511008 0.0086924916 1.377860e-04 6.938820e-04 9 33996478 33997036 559 - 0.954 0.400 -2.402
ENSG00000137073 E066 5.2356000 0.2700535484 7.739429e-03 2.312381e-02 9 33997037 33998786 1750 - 1.117 0.362 -3.214
ENSG00000137073 E067 119.9918016 0.0179227073 6.963296e-05 3.782257e-04 9 33998787 33998864 78 - 2.220 1.945 -0.920
ENSG00000137073 E068 3.0443301 0.1063879990 1.749191e-01 2.945721e-01 9 34011627 34011664 38 - 0.749 0.480 -1.193
ENSG00000137073 E069 0.5202097 0.0205992488 3.098026e-01 4.521419e-01 9 34014504 34014625 122 - 0.265 0.098 -1.736
ENSG00000137073 E070 102.4230552 0.0140367087 7.087298e-06 4.874274e-05 9 34017050 34017189 140 - 2.159 1.869 -0.976
ENSG00000137073 E071 2.4325451 0.1736402402 5.164448e-01 6.510231e-01 9 34032799 34032908 110 - 0.597 0.478 -0.558
ENSG00000137073 E072 38.1114941 0.0150347266 1.799122e-03 6.596701e-03 9 34048825 34048877 53 - 1.715 1.470 -0.837
ENSG00000137073 E073 2.9119541 0.0053781122 8.670487e-01 9.184477e-01 9 34048878 34048949 72 - 0.547 0.577 0.138
ENSG00000137073 E074 6.6419428 0.0024814019 1.618924e-02 4.314193e-02 9 34049149 34049388 240 - 1.028 0.743 -1.091