ENSG00000136813

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000338205 ENSG00000136813 HEK293_OSMI2_2hA HEK293_TMG_2hB ECPAS protein_coding protein_coding 26.59113 26.19023 30.95576 3.174775 0.5521345 0.2410942 1.946507 1.6019637 2.484812 0.1566001 0.3413451 0.63011185 0.07357917 0.0617000 0.07993333 0.01823333 4.848232e-01 5.009273e-30 FALSE TRUE
ENST00000374383 ENSG00000136813 HEK293_OSMI2_2hA HEK293_TMG_2hB ECPAS protein_coding protein_coding 26.59113 26.19023 30.95576 3.174775 0.5521345 0.2410942 1.896510 6.4016991 0.000000 1.0842395 0.0000000 -9.32456291 0.07716250 0.2472333 0.00000000 -0.24723333 5.009273e-30 5.009273e-30 FALSE TRUE
MSTRG.33224.10 ENSG00000136813 HEK293_OSMI2_2hA HEK293_TMG_2hB ECPAS protein_coding   26.59113 26.19023 30.95576 3.174775 0.5521345 0.2410942 2.426052 0.4668392 6.255125 0.4668392 1.4103639 3.71576852 0.08219167 0.0166000 0.20363333 0.18703333 3.860591e-02 5.009273e-30 FALSE TRUE
MSTRG.33224.8 ENSG00000136813 HEK293_OSMI2_2hA HEK293_TMG_2hB ECPAS protein_coding   26.59113 26.19023 30.95576 3.174775 0.5521345 0.2410942 17.363325 16.0551480 17.031541 2.2097926 0.9131238 0.08512151 0.65852083 0.6102667 0.55000000 -0.06026667 4.114011e-01 5.009273e-30 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000136813 E001 0.8450104 0.0188179646 8.683468e-01 9.193550e-01 9 111360685 111360691 7 - 0.265 0.245 -0.149
ENSG00000136813 E002 1.0267148 0.0406081378 7.596405e-01 8.439376e-01 9 111360692 111360692 1 - 0.265 0.330 0.439
ENSG00000136813 E003 72.2794514 0.0004229423 1.002035e-01 1.907961e-01 9 111360693 111361868 1176 - 1.887 1.842 -0.155
ENSG00000136813 E004 8.8468401 0.0044021106 6.053139e-02 1.275257e-01 9 111361869 111361885 17 - 1.066 0.871 -0.725
ENSG00000136813 E005 11.8429930 0.0015863045 3.048248e-01 4.468529e-01 9 111361886 111361895 10 - 1.055 1.176 0.432
ENSG00000136813 E006 13.9316909 0.0024284203 7.621662e-03 2.282884e-02 9 111361896 111361910 15 - 1.033 1.299 0.947
ENSG00000136813 E007 48.6497112 0.0092689937 4.732443e-11 8.823414e-10 9 111361911 111361928 18 - 1.404 1.897 1.677
ENSG00000136813 E008 264.3326999 0.0136036945 3.964702e-09 5.262390e-08 9 111361929 111362053 125 - 2.201 2.587 1.286
ENSG00000136813 E009 379.5547345 0.0079420307 1.320651e-15 4.921190e-14 9 111362054 111362169 116 - 2.351 2.747 1.318
ENSG00000136813 E010 287.9589497 0.0037796972 5.927656e-17 2.618271e-15 9 111363588 111363659 72 - 2.280 2.606 1.088
ENSG00000136813 E011 5.0671118 0.0031431363 2.045699e-03 7.367201e-03 9 111365554 111366238 685 - 0.933 0.514 -1.737
ENSG00000136813 E012 290.8764998 0.0049328308 3.121825e-14 9.552904e-13 9 111366239 111366327 89 - 2.286 2.608 1.074
ENSG00000136813 E013 340.4967200 0.0058560115 2.935212e-13 7.807739e-12 9 111366522 111366627 106 - 2.351 2.679 1.092
ENSG00000136813 E014 400.2063328 0.0022505478 2.031583e-18 1.077182e-16 9 111369035 111369173 139 - 2.457 2.731 0.914
ENSG00000136813 E015 411.2444299 0.0006492798 1.027100e-28 1.541846e-26 9 111370435 111370627 193 - 2.481 2.737 0.853
ENSG00000136813 E016 215.0721143 0.0005701346 3.697261e-21 2.703338e-19 9 111370722 111370765 44 - 2.190 2.464 0.912
ENSG00000136813 E017 366.4618767 0.0006385504 1.525010e-17 7.293829e-16 9 111371621 111371829 209 - 2.460 2.668 0.694
ENSG00000136813 E018 331.8626073 0.0004959952 4.353013e-10 6.891161e-09 9 111372429 111372620 192 - 2.446 2.605 0.530
ENSG00000136813 E019 231.9381678 0.0001749713 3.559282e-05 2.077126e-04 9 111373170 111373236 67 - 2.312 2.433 0.403
ENSG00000136813 E020 246.0838040 0.0001616280 1.106756e-01 2.065243e-01 9 111373315 111373406 92 - 2.369 2.429 0.201
ENSG00000136813 E021 181.2131004 0.0001980964 7.281965e-01 8.207071e-01 9 111373972 111374038 67 - 2.248 2.281 0.110
ENSG00000136813 E022 217.0613373 0.0001897500 1.121173e-01 2.086432e-01 9 111375113 111375202 90 - 2.312 2.374 0.208
ENSG00000136813 E023 175.6421104 0.0002458856 9.828579e-02 1.879186e-01 9 111376476 111376541 66 - 2.219 2.287 0.229
ENSG00000136813 E024 259.5658353 0.0001850286 1.196261e-01 2.194349e-01 9 111378580 111378730 151 - 2.391 2.449 0.194
ENSG00000136813 E025 219.2889107 0.0013436561 6.220144e-02 1.303524e-01 9 111383211 111383332 122 - 2.308 2.383 0.250
ENSG00000136813 E026 129.0851196 0.0008179583 2.208423e-01 3.514374e-01 9 111384522 111384569 48 - 2.085 2.149 0.212
ENSG00000136813 E027 178.4908659 0.0076125220 9.667102e-01 9.831244e-01 9 111385337 111385442 106 - 2.247 2.263 0.053
ENSG00000136813 E028 162.3078070 0.0078700156 6.887070e-01 7.907765e-01 9 111386377 111386456 80 - 2.215 2.212 -0.009
ENSG00000136813 E029 243.5579226 0.0040425363 4.104048e-01 5.539996e-01 9 111389556 111389723 168 - 2.395 2.385 -0.035
ENSG00000136813 E030 194.3352730 0.0007826611 2.736520e-02 6.673602e-02 9 111389984 111390101 118 - 2.312 2.272 -0.134
ENSG00000136813 E031 168.0975245 0.0001940677 1.182910e-02 3.312081e-02 9 111391756 111391824 69 - 2.253 2.207 -0.153
ENSG00000136813 E032 197.8227307 0.0003373982 2.567129e-03 8.964370e-03 9 111392768 111392882 115 - 2.327 2.271 -0.186
ENSG00000136813 E033 125.9039021 0.0058992886 4.600373e-02 1.020416e-01 9 111393680 111393734 55 - 2.141 2.059 -0.276
ENSG00000136813 E034 148.0117363 0.0012298900 2.403124e-02 5.988039e-02 9 111394160 111394305 146 - 2.200 2.146 -0.181
ENSG00000136813 E035 131.8136556 0.0002859231 3.499410e-06 2.581591e-05 9 111397030 111397153 124 - 2.180 2.057 -0.412
ENSG00000136813 E036 135.0844325 0.0033757035 6.663131e-03 2.034762e-02 9 111408571 111408672 102 - 2.177 2.085 -0.308
ENSG00000136813 E037 187.3371992 0.0064250591 3.086606e-03 1.052084e-02 9 111410041 111410213 173 - 2.328 2.210 -0.394
ENSG00000136813 E038 206.8354754 0.0022809628 1.221249e-05 7.951404e-05 9 111410980 111411142 163 - 2.375 2.249 -0.422
ENSG00000136813 E039 175.2905474 0.0006815346 3.399806e-08 3.790062e-07 9 111412014 111412148 135 - 2.310 2.171 -0.466
ENSG00000136813 E040 121.5043216 0.0055930405 1.537974e-05 9.791136e-05 9 111413895 111413986 92 - 2.170 1.978 -0.640
ENSG00000136813 E041 182.7797665 0.0022298063 7.511529e-14 2.174567e-12 9 111414429 111414651 223 - 2.365 2.118 -0.825
ENSG00000136813 E042 146.8170215 0.0005707042 1.345399e-18 7.290667e-17 9 111416272 111416352 81 - 2.274 2.013 -0.872
ENSG00000136813 E043 170.8718843 0.0043712679 4.023592e-09 5.334575e-08 9 111417883 111418006 124 - 2.331 2.096 -0.784
ENSG00000136813 E044 144.7501268 0.0158925439 9.271743e-04 3.710009e-03 9 111420017 111420120 104 - 2.250 2.040 -0.700
ENSG00000136813 E045 144.7500352 0.0051128869 1.123544e-07 1.130945e-06 9 111421921 111422039 119 - 2.258 2.030 -0.761
ENSG00000136813 E046 61.4912031 0.0092989105 1.835730e-04 8.931699e-04 9 111422040 111422043 4 - 1.892 1.660 -0.784
ENSG00000136813 E047 113.4740773 0.0002803174 5.265512e-14 1.557919e-12 9 111422134 111422200 67 - 2.159 1.923 -0.790
ENSG00000136813 E048 101.1586849 0.0003331370 3.525620e-14 1.069525e-12 9 111423199 111423248 50 - 2.116 1.862 -0.853
ENSG00000136813 E049 112.7408524 0.0003803754 1.107362e-19 6.800209e-18 9 111425418 111425496 79 - 2.174 1.876 -1.003
ENSG00000136813 E050 109.8788887 0.0144526122 4.930838e-05 2.782641e-04 9 111425743 111425828 86 - 2.148 1.889 -0.871
ENSG00000136813 E051 138.1374495 0.0066078223 2.044274e-11 4.043871e-10 9 111428042 111428161 120 - 2.268 1.943 -1.087
ENSG00000136813 E052 126.6373641 0.0004154148 6.164322e-29 9.455970e-27 9 111430547 111430628 82 - 2.242 1.882 -1.207
ENSG00000136813 E053 163.5698722 0.0091374882 3.533681e-11 6.721888e-10 9 111433233 111433372 140 - 2.348 2.000 -1.166
ENSG00000136813 E054 167.1986681 0.0071844575 7.915893e-14 2.284995e-12 9 111436940 111437108 169 - 2.361 1.999 -1.213
ENSG00000136813 E055 100.4298211 0.0029405905 1.542322e-15 5.689024e-14 9 111440372 111440456 85 - 2.138 1.795 -1.152
ENSG00000136813 E056 75.8192645 0.0035882138 8.104208e-11 1.452368e-09 9 111440457 111440521 65 - 2.009 1.698 -1.048
ENSG00000136813 E057 48.2376201 0.0008757286 2.500588e-11 4.883299e-10 9 111442306 111442310 5 - 1.823 1.484 -1.153
ENSG00000136813 E058 72.9901883 0.0011473988 6.128345e-16 2.380067e-14 9 111442311 111442424 114 - 2.004 1.655 -1.178
ENSG00000136813 E059 71.7067139 0.0074357928 9.142101e-10 1.365455e-08 9 111444378 111444494 117 - 1.997 1.645 -1.186
ENSG00000136813 E060 78.2402748 0.0031922404 5.135221e-15 1.763372e-13 9 111451425 111451555 131 - 2.040 1.665 -1.263
ENSG00000136813 E061 13.7311307 0.0012838977 8.637168e-05 4.580226e-04 9 111472897 111473000 104 - 1.302 0.951 -1.262
ENSG00000136813 E062 6.9763005 0.0023126291 1.856039e-02 4.836514e-02 9 111483504 111483879 376 - 1.010 0.743 -1.027
ENSG00000136813 E063 1.6295437 0.0080810684 1.179129e-02 3.303351e-02 9 111483985 111484115 131 - 0.580 0.139 -2.890
ENSG00000136813 E064 51.6826758 0.0222025983 4.461929e-10 7.054741e-09 9 111484116 111484261 146 - 1.904 1.340 -1.924
ENSG00000136813 E065 34.9077772 0.0901261651 3.035410e-05 1.803993e-04 9 111484262 111484353 92 - 1.753 1.099 -2.265
ENSG00000136813 E066 16.7183855 0.0148809266 1.897597e-07 1.826140e-06 9 111484354 111484548 195 - 1.428 0.872 -1.999
ENSG00000136813 E067 0.0000000       9 111484662 111484745 84 -