ENSG00000136802

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000372599 ENSG00000136802 HEK293_OSMI2_2hA HEK293_TMG_2hB LRRC8A protein_coding protein_coding 23.73182 32.74055 17.2207 1.993618 0.05964888 -0.9265374 4.049718 8.380174 0.9239091 0.302012 0.5052350 -3.1673467 0.1655000 0.2575333 0.05366667 -0.2038667 2.292544e-01 2.410161e-25 FALSE TRUE
ENST00000372600 ENSG00000136802 HEK293_OSMI2_2hA HEK293_TMG_2hB LRRC8A protein_coding protein_coding 23.73182 32.74055 17.2207 1.993618 0.05964888 -0.9265374 14.937460 12.279555 15.6379141 2.231333 0.4397934 0.3485377 0.6733667 0.3714667 0.90803333 0.5365667 2.393527e-10 2.410161e-25 FALSE TRUE
ENST00000492784 ENSG00000136802 HEK293_OSMI2_2hA HEK293_TMG_2hB LRRC8A protein_coding processed_transcript 23.73182 32.74055 17.2207 1.993618 0.05964888 -0.9265374 3.961473 10.849537 0.0000000 1.584131 0.0000000 -10.0847469 0.1285125 0.3326667 0.00000000 -0.3326667 2.410161e-25 2.410161e-25   FALSE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000136802 E001 21.7073567 0.023079457 1.443134e-14 4.646455e-13 9 128882133 128882195 63 + 1.659 0.896 -2.699
ENSG00000136802 E002 40.1957229 0.036329549 1.605942e-06 1.275429e-05 9 128882196 128882250 55 + 1.822 1.377 -1.519
ENSG00000136802 E003 7.9416913 0.015850034 1.308386e-01 2.353225e-01 9 128882502 128882909 408 + 0.755 1.020 1.015
ENSG00000136802 E004 2.9390240 0.008067028 5.320870e-01 6.644626e-01 9 128884995 128885388 394 + 0.615 0.569 -0.205
ENSG00000136802 E005 78.8339648 0.006182939 7.080253e-09 8.974526e-08 9 128886015 128886121 107 + 2.019 1.778 -0.812
ENSG00000136802 E006 1237.8696413 0.002173135 6.220431e-11 1.134357e-09 9 128907157 128909321 2165 + 3.088 3.068 -0.068
ENSG00000136802 E007 0.7029582 0.017267182 6.128878e-01 7.317227e-01 9 128912744 128912816 73 + 0.143 0.259 1.059
ENSG00000136802 E008 1399.4470890 0.005489770 2.767169e-12 6.320617e-11 9 128916096 128918039 1944 + 2.975 3.198 0.740