ENSG00000135365

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000676320 ENSG00000135365 HEK293_OSMI2_2hA HEK293_TMG_2hB PHF21A protein_coding protein_coding 6.093181 5.787265 5.22335 0.5156896 0.3192255 -0.1476377 1.4896048 1.99378716 1.0421447 0.17558762 0.09132573 -0.92939610 0.25302500 0.348233333 0.20073333 -0.14750000 0.03134186 0.0001700724 FALSE TRUE
MSTRG.5442.18 ENSG00000135365 HEK293_OSMI2_2hA HEK293_TMG_2hB PHF21A protein_coding   6.093181 5.787265 5.22335 0.5156896 0.3192255 -0.1476377 0.2449726 0.06150475 0.4217592 0.03579628 0.17022398 2.59411593 0.04467500 0.011766667 0.07713333 0.06536667 0.15108432 0.0001700724 FALSE TRUE
MSTRG.5442.21 ENSG00000135365 HEK293_OSMI2_2hA HEK293_TMG_2hB PHF21A protein_coding   6.093181 5.787265 5.22335 0.5156896 0.3192255 -0.1476377 0.2916143 0.04512911 0.4110843 0.02257273 0.28757967 2.93322294 0.04769167 0.007166667 0.07776667 0.07060000 0.52028654 0.0001700724 FALSE TRUE
MSTRG.5442.3 ENSG00000135365 HEK293_OSMI2_2hA HEK293_TMG_2hB PHF21A protein_coding   6.093181 5.787265 5.22335 0.5156896 0.3192255 -0.1476377 0.2943905 0.31796759 0.3350520 0.23574666 0.16816429 0.07326065 0.05114583 0.054700000 0.06696667 0.01226667 0.94252435 0.0001700724 FALSE TRUE
MSTRG.5442.6 ENSG00000135365 HEK293_OSMI2_2hA HEK293_TMG_2hB PHF21A protein_coding   6.093181 5.787265 5.22335 0.5156896 0.3192255 -0.1476377 1.2606020 1.69973481 0.6530004 0.27361908 0.33686005 -1.36669093 0.20073750 0.299800000 0.11790000 -0.18190000 0.46013739 0.0001700724 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000135365 E001 0.0000000       11 45929319 45929322 4 -      
ENSG00000135365 E002 157.4013533 0.0022380487 1.539847e-08 1.832869e-07 11 45929323 45932565 3243 - 2.037 2.247 0.704
ENSG00000135365 E003 7.5954687 0.0286494716 4.388433e-02 9.817270e-02 11 45932566 45932578 13 - 0.688 0.994 1.193
ENSG00000135365 E004 6.4506642 0.0137362973 2.568011e-02 6.327821e-02 11 45932579 45932580 2 - 0.613 0.939 1.309
ENSG00000135365 E005 7.7374191 0.0192277987 2.740465e-02 6.681247e-02 11 45932581 45932595 15 - 0.688 1.004 1.231
ENSG00000135365 E006 10.8134607 0.0296173959 7.506376e-02 1.516412e-01 11 45932596 45932651 56 - 0.881 1.127 0.909
ENSG00000135365 E007 122.1730532 0.0061875451 2.393461e-04 1.130532e-03 11 45932652 45933480 829 - 1.944 2.134 0.637
ENSG00000135365 E008 55.6050387 0.0004815643 1.369979e-03 5.208685e-03 11 45933481 45933830 350 - 1.620 1.786 0.562
ENSG00000135365 E009 46.3327284 0.0005154048 2.247654e-02 5.667735e-02 11 45933831 45933984 154 - 1.569 1.698 0.440
ENSG00000135365 E010 22.7294763 0.0008479691 2.544160e-01 3.910986e-01 11 45933985 45934001 17 - 1.293 1.384 0.320
ENSG00000135365 E011 20.5988438 0.0009222199 3.056314e-01 4.477582e-01 11 45934002 45934004 3 - 1.257 1.343 0.302
ENSG00000135365 E012 29.9528592 0.0007577756 1.955246e-01 3.206228e-01 11 45934005 45934043 39 - 1.412 1.503 0.315
ENSG00000135365 E013 35.4754532 0.0053639845 2.716792e-01 4.104488e-01 11 45934044 45934132 89 - 1.495 1.578 0.283
ENSG00000135365 E014 38.3782074 0.0007200768 3.653397e-01 5.096612e-01 11 45934133 45934225 93 - 1.541 1.600 0.201
ENSG00000135365 E015 0.8888167 0.0845510613 6.519392e-01 7.627133e-01 11 45934226 45934585 360 - 0.335 0.257 -0.526
ENSG00000135365 E016 1.9875376 0.0072476389 9.605732e-01 9.791855e-01 11 45934586 45935120 535 - 0.468 0.464 -0.020
ENSG00000135365 E017 1.5843985 0.0089616551 4.982187e-02 1.088425e-01 11 45935121 45935157 37 - 0.142 0.503 2.494
ENSG00000135365 E018 2.6141320 0.0057446107 2.713182e-03 9.412618e-03 11 45935158 45935246 89 - 0.142 0.683 3.301
ENSG00000135365 E019 0.8868421 0.0352150221 3.871725e-02 8.865816e-02 11 45935247 45935635 389 - 0.468 0.105 -2.831
ENSG00000135365 E020 36.5932664 0.0006371087 9.238971e-01 9.560850e-01 11 45935636 45935693 58 - 1.555 1.556 0.003
ENSG00000135365 E021 33.3920852 0.0006573729 9.870486e-01 9.959489e-01 11 45935694 45935739 46 - 1.511 1.518 0.026
ENSG00000135365 E022 41.8232243 0.0027445149 4.044729e-01 5.481795e-01 11 45936494 45936569 76 - 1.573 1.630 0.193
ENSG00000135365 E023 1.5436019 0.6292000717 8.882674e-01 9.325749e-01 11 45936570 45938156 1587 - 0.404 0.405 0.004
ENSG00000135365 E024 37.3590506 0.0151488514 7.834640e-01 8.610429e-01 11 45938157 45938218 62 - 1.545 1.574 0.100
ENSG00000135365 E025 41.9954164 0.0213599358 9.008431e-01 9.407687e-01 11 45938219 45938312 94 - 1.603 1.620 0.057
ENSG00000135365 E026 4.1800781 0.0184653616 7.264454e-02 1.477449e-01 11 45938313 45939756 1444 - 0.858 0.601 -1.054
ENSG00000135365 E027 46.4459355 0.0088764696 4.992192e-01 6.355415e-01 11 45945840 45946003 164 - 1.683 1.642 -0.140
ENSG00000135365 E028 0.6192988 0.0193647167 1.734024e-01 2.926163e-01 11 45946004 45946075 72 - 0.335 0.105 -2.090
ENSG00000135365 E029 1.1395084 0.0114569822 1.076773e-01 2.021117e-01 11 45946076 45946098 23 - 0.468 0.189 -1.826
ENSG00000135365 E030 25.6514322 0.0011845571 1.984505e-01 3.242783e-01 11 45948886 45948946 61 - 1.461 1.379 -0.283
ENSG00000135365 E031 26.2324367 0.0007841432 4.363495e-01 5.784337e-01 11 45949402 45949481 80 - 1.449 1.403 -0.159
ENSG00000135365 E032 0.1451727 0.0424933720 3.460185e-01   11 45949482 45950205 724 - 0.142 0.000 -13.104
ENSG00000135365 E033 20.4263869 0.0009641417 7.962316e-02 1.589518e-01 11 45950206 45950257 52 - 1.392 1.267 -0.437
ENSG00000135365 E034 0.1482932 0.0416458437 6.760734e-01   11 45951910 45953526 1617 - 0.000 0.105 11.628
ENSG00000135365 E035 29.8589947 0.0197971683 1.634864e-01 2.796929e-01 11 45953527 45953625 99 - 1.550 1.431 -0.409
ENSG00000135365 E036 1.5490153 0.0094775858 6.751700e-02 1.392221e-01 11 45964503 45965314 812 - 0.570 0.260 -1.729
ENSG00000135365 E037 50.1582331 0.0040157980 3.331663e-03 1.123945e-02 11 45965315 45965608 294 - 1.789 1.631 -0.535
ENSG00000135365 E038 25.7287406 0.0007717309 2.897872e-02 6.996396e-02 11 45969815 45969901 87 - 1.495 1.354 -0.487
ENSG00000135365 E039 11.9422696 0.0014618398 5.913895e-02 1.251581e-01 11 45969902 45969904 3 - 1.197 1.024 -0.624
ENSG00000135365 E040 0.4470576 0.0230222993 3.753203e-01 5.197475e-01 11 45969905 45971115 1211 - 0.249 0.105 -1.508
ENSG00000135365 E041 16.7758063 0.0012134669 8.773731e-02 1.717052e-01 11 45971116 45971138 23 - 1.309 1.174 -0.476
ENSG00000135365 E042 30.0683318 0.0043926263 2.728794e-02 6.657760e-02 11 45971139 45971277 139 - 1.560 1.414 -0.501
ENSG00000135365 E043 25.5072688 0.0011594858 2.110391e-02 5.381710e-02 11 45971278 45971346 69 - 1.495 1.343 -0.524
ENSG00000135365 E044 14.6987842 0.0013729553 7.173850e-02 1.462413e-01 11 45971347 45971347 1 - 1.266 1.115 -0.538
ENSG00000135365 E045 15.9530729 0.0011533313 9.399966e-02 1.813788e-01 11 45971348 45971364 17 - 1.293 1.158 -0.476
ENSG00000135365 E046 11.1715692 0.0015198151 1.372031e-01 2.441891e-01 11 45971365 45971367 3 - 1.152 1.012 -0.506
ENSG00000135365 E047 0.0000000       11 45971368 45971369 2 -      
ENSG00000135365 E048 0.0000000       11 45977881 45979223 1343 -      
ENSG00000135365 E049 0.1472490 0.0425354800 3.454343e-01   11 45979224 45979759 536 - 0.142 0.000 -13.104
ENSG00000135365 E050 26.5406778 0.0007700779 3.957139e-02 9.023776e-02 11 45979760 45979815 56 - 1.500 1.369 -0.452
ENSG00000135365 E051 25.9975748 0.0007966116 2.828583e-01 4.229112e-01 11 45979816 45979862 47 - 1.455 1.389 -0.229
ENSG00000135365 E052 29.0498802 0.0009319359 5.125333e-01 6.474444e-01 11 45979863 45979966 104 - 1.484 1.448 -0.124
ENSG00000135365 E053 0.0000000       11 45979967 45981155 1189 -      
ENSG00000135365 E054 0.0000000       11 46026811 46027078 268 -      
ENSG00000135365 E055 0.0000000       11 46047970 46048003 34 -      
ENSG00000135365 E056 1.7735810 0.0076880796 3.702214e-01 5.146524e-01 11 46048004 46049399 1396 - 0.522 0.374 -0.769
ENSG00000135365 E057 0.4439371 0.0215786914 4.126445e-02 9.336692e-02 11 46049400 46049497 98 - 0.335 0.000 -14.731
ENSG00000135365 E058 0.1472490 0.0425354800 3.454343e-01   11 46049616 46049737 122 - 0.142 0.000 -13.104
ENSG00000135365 E059 0.0000000       11 46050346 46050466 121 -      
ENSG00000135365 E060 0.1817044 0.0392360211 6.750211e-01   11 46075033 46076753 1721 - 0.000 0.105 11.639
ENSG00000135365 E061 21.3296501 0.0011475716 5.648925e-01 6.921124e-01 11 46076754 46076819 66 - 1.293 1.343 0.177
ENSG00000135365 E062 0.3729606 0.0282814278 7.902983e-01 8.658418e-01 11 46076820 46076840 21 - 0.142 0.105 -0.503
ENSG00000135365 E063 13.7201558 0.0221155758 6.784116e-01 7.828846e-01 11 46079134 46079140 7 - 1.102 1.164 0.223
ENSG00000135365 E064 16.3208780 0.0050770460 8.387845e-01 8.992425e-01 11 46079141 46079166 26 - 1.218 1.207 -0.040
ENSG00000135365 E065 0.6621732 0.0620705317 7.218867e-01 8.161225e-01 11 46082424 46083554 1131 - 0.249 0.190 -0.504
ENSG00000135365 E066 0.5149242 0.2253805041 8.409774e-01 9.007681e-01 11 46083555 46083611 57 - 0.143 0.190 0.499
ENSG00000135365 E067 14.9630751 0.0012261927 4.523497e-01 5.932100e-01 11 46084166 46084185 20 - 1.218 1.158 -0.212
ENSG00000135365 E068 14.8470341 0.0012346240 5.288983e-01 6.617717e-01 11 46084186 46084192 7 - 1.207 1.158 -0.175
ENSG00000135365 E069 28.3141247 0.0021999393 3.320471e-03 1.120695e-02 11 46084193 46084302 110 - 1.555 1.365 -0.656
ENSG00000135365 E070 8.2006353 0.0608881610 9.966747e-02 1.899816e-01 11 46090455 46090506 52 - 1.089 0.833 -0.958
ENSG00000135365 E071 7.9319356 0.0024580157 4.994390e-03 1.591302e-02 11 46090507 46090566 60 - 1.102 0.792 -1.164
ENSG00000135365 E072 0.1451727 0.0424933720 3.460185e-01   11 46090567 46090581 15 - 0.142 0.000 -13.104
ENSG00000135365 E073 16.4328538 0.0148234302 9.886001e-03 2.848346e-02 11 46092183 46092223 41 - 1.364 1.115 -0.877
ENSG00000135365 E074 0.0000000       11 46092224 46092224 1 -      
ENSG00000135365 E075 0.1515154 0.0425024131 3.451283e-01   11 46112043 46112093 51 - 0.142 0.000 -13.105
ENSG00000135365 E076 5.1464266 0.0870565145 1.399181e-01 2.479103e-01 11 46117922 46118064 143 - 0.924 0.658 -1.059
ENSG00000135365 E077 2.6343868 0.0074637573 1.529697e-02 4.116136e-02 11 46118065 46118114 50 - 0.752 0.374 -1.770
ENSG00000135365 E078 1.4477361 0.0239403976 1.323865e-01 2.374055e-01 11 46118115 46118137 23 - 0.522 0.260 -1.506
ENSG00000135365 E079 1.6262182 0.0113217960 5.695489e-01 6.960887e-01 11 46118138 46118145 8 - 0.468 0.374 -0.506
ENSG00000135365 E080 5.7497901 0.0028460746 1.175923e-01 2.165072e-01 11 46118742 46118800 59 - 0.923 0.730 -0.753
ENSG00000135365 E081 0.7750806 0.0187979988 7.875033e-02 1.575131e-01 11 46118801 46118803 3 - 0.407 0.105 -2.506
ENSG00000135365 E082 5.4970972 0.0074158082 6.441598e-02 1.340652e-01 11 46119724 46119862 139 - 0.923 0.684 -0.943
ENSG00000135365 E083 0.1482932 0.0416458437 6.760734e-01   11 46120389 46120540 152 - 0.000 0.105 11.628
ENSG00000135365 E084 0.5901394 0.2256168842 8.333669e-01 8.956110e-01 11 46120746 46120934 189 - 0.142 0.194 0.537
ENSG00000135365 E085 10.2547442 0.0016835710 2.286468e-03 8.109418e-03 11 46120935 46121454 520 - 1.197 0.894 -1.109