ENSG00000134871

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000360467 ENSG00000134871 HEK293_OSMI2_2hA HEK293_TMG_2hB COL4A2 protein_coding protein_coding 28.5943 41.03607 18.75856 1.462155 0.3915318 -1.128926 21.295906 23.360134 17.08932 2.6901581 0.342244 -0.4507268 0.79462083 0.56773333 0.9110333 0.34330000 5.896903e-10 2.992407e-63 FALSE TRUE
ENST00000463084 ENSG00000134871 HEK293_OSMI2_2hA HEK293_TMG_2hB COL4A2 protein_coding processed_transcript 28.5943 41.03607 18.75856 1.462155 0.3915318 -1.128926 1.130302 3.766144 0.00000 2.4446976 0.000000 -8.5607700 0.02774583 0.09416667 0.0000000 -0.09416667 2.401020e-01 2.992407e-63 FALSE TRUE
ENST00000650225 ENSG00000134871 HEK293_OSMI2_2hA HEK293_TMG_2hB COL4A2 protein_coding retained_intron 28.5943 41.03607 18.75856 1.462155 0.3915318 -1.128926 4.497125 12.245346 0.00000 0.9261893 0.000000 -10.2591955 0.11729583 0.29763333 0.0000000 -0.29763333 2.992407e-63 2.992407e-63 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000134871 E001 0.0000000       13 110305812 110305943 132 +      
ENSG00000134871 E002 3.7808042 0.0558178800 1.597474e-03 5.953197e-03 13 110307258 110307266 9 + 0.949 0.427 -2.240
ENSG00000134871 E003 8.9676251 0.0157720403 1.243459e-05 8.084620e-05 13 110307267 110307283 17 + 1.248 0.747 -1.865
ENSG00000134871 E004 31.6016135 0.0015027042 1.138111e-10 1.990139e-09 13 110307284 110307356 73 + 1.701 1.313 -1.331
ENSG00000134871 E005 76.0568386 0.0025634433 4.799143e-07 4.260065e-06 13 110307357 110307528 172 + 1.984 1.770 -0.720
ENSG00000134871 E006 89.9166203 0.0014880092 2.204275e-07 2.095931e-06 13 110307860 110307947 88 + 2.045 1.852 -0.648
ENSG00000134871 E007 92.4720636 0.0013482726 1.975039e-05 1.226450e-04 13 110308069 110308123 55 + 2.034 1.881 -0.513
ENSG00000134871 E008 0.0000000       13 110328370 110328549 180 +      
ENSG00000134871 E009 131.2498980 0.0045322698 2.010128e-04 9.680777e-04 13 110357472 110357552 81 + 2.182 2.035 -0.490
ENSG00000134871 E010 1.5510891 0.0087128106 9.539961e-01 9.751781e-01 13 110357553 110362215 4663 + 0.365 0.389 0.135
ENSG00000134871 E011 130.5566745 0.0050692481 3.232943e-03 1.095263e-02 13 110424734 110424801 68 + 2.161 2.045 -0.390
ENSG00000134871 E012 152.1157619 0.0002192601 8.338302e-05 4.440134e-04 13 110424802 110424868 67 + 2.212 2.116 -0.321
ENSG00000134871 E013 123.0623749 0.0002359041 3.214238e-02 7.613214e-02 13 110424953 110424997 45 + 2.090 2.040 -0.167
ENSG00000134871 E014 180.3018539 0.0024155975 9.605558e-03 2.779254e-02 13 110428467 110428583 117 + 2.266 2.198 -0.229
ENSG00000134871 E015 1.5437022 0.0091438672 5.336587e-01 6.658316e-01 13 110428584 110429842 1259 + 0.440 0.344 -0.543
ENSG00000134871 E016 158.4775868 0.0013468219 5.612200e-04 2.389299e-03 13 110429885 110429956 72 + 2.225 2.132 -0.310
ENSG00000134871 E017 1.2480582 0.0107426800 2.361833e-01 3.697564e-01 13 110430051 110430400 350 + 0.158 0.389 1.720
ENSG00000134871 E018 115.5244567 0.0002782901 8.222829e-06 5.570898e-05 13 110430401 110430436 36 + 2.116 1.986 -0.437
ENSG00000134871 E019 148.1080236 0.0009562993 1.862502e-06 1.459184e-05 13 110430545 110430607 63 + 2.227 2.093 -0.448
ENSG00000134871 E020 0.4407149 0.0215577460 2.590488e-01 3.964164e-01 13 110430608 110431007 400 + 0.274 0.094 -1.868
ENSG00000134871 E021 128.6108316 0.0003004256 8.803340e-05 4.657655e-04 13 110432325 110432360 36 + 2.148 2.042 -0.355
ENSG00000134871 E022 159.9091537 0.0002396142 2.139700e-05 1.317362e-04 13 110434401 110434442 42 + 2.239 2.136 -0.343
ENSG00000134871 E023 122.4167514 0.0002946622 8.533008e-07 7.193311e-06 13 110436269 110436285 17 + 2.146 2.004 -0.475
ENSG00000134871 E024 183.9040241 0.0015274247 4.912269e-08 5.304764e-07 13 110436286 110436367 82 + 2.330 2.178 -0.508
ENSG00000134871 E025 147.1704618 0.0002672646 5.934173e-09 7.645616e-08 13 110438002 110438037 36 + 2.234 2.080 -0.517
ENSG00000134871 E026 147.8846867 0.0021765969 1.076944e-06 8.876007e-06 13 110438618 110438668 51 + 2.239 2.083 -0.522
ENSG00000134871 E027 119.8139319 0.0012042469 6.933416e-03 2.105160e-02 13 110439789 110439833 45 + 2.098 2.021 -0.257
ENSG00000134871 E028 124.4625762 0.0002537281 8.459364e-02 1.667466e-01 13 110445829 110445882 54 + 2.086 2.050 -0.120
ENSG00000134871 E029 114.1783901 0.0006636231 5.385425e-01 6.699539e-01 13 110446798 110446864 67 + 2.022 2.022 0.000
ENSG00000134871 E030 2.9389077 0.0054433365 3.417011e-01 4.856193e-01 13 110446865 110448678 1814 + 0.440 0.616 0.835
ENSG00000134871 E031 139.5442202 0.0057702548 5.598987e-02 1.196772e-01 13 110449679 110449789 111 + 2.156 2.091 -0.219
ENSG00000134871 E032 171.7405662 0.0067721134 8.993747e-02 1.750435e-01 13 110450305 110450454 150 + 2.241 2.184 -0.193
ENSG00000134871 E033 142.5754124 0.0008477399 9.611872e-02 1.845448e-01 13 110457343 110457435 93 + 2.143 2.109 -0.112
ENSG00000134871 E034 234.1443527 0.0010780839 1.653976e-03 6.134795e-03 13 110458771 110458934 164 + 2.381 2.314 -0.222
ENSG00000134871 E035 10.7253561 0.0016046488 2.862046e-02 6.924991e-02 13 110458935 110459771 837 + 0.827 1.100 1.019
ENSG00000134871 E036 0.4783925 0.0212290437 2.587306e-01 3.960410e-01 13 110462022 110462113 92 + 0.274 0.094 -1.866
ENSG00000134871 E037 140.3297224 0.0002977184 7.230403e-04 2.981343e-03 13 110462114 110462186 73 + 2.168 2.083 -0.284
ENSG00000134871 E038 143.6209431 0.0024976397 1.691719e-02 4.475132e-02 13 110462278 110462384 107 + 2.169 2.101 -0.228
ENSG00000134871 E039 0.4448795 0.6177265324 5.036148e-01 6.395947e-01 13 110462385 110462449 65 + 0.000 0.224 11.916
ENSG00000134871 E040 204.3946791 0.0034337245 3.775815e-01 5.219043e-01 13 110465405 110465606 202 + 2.280 2.274 -0.019
ENSG00000134871 E041 161.1336387 0.0056991268 5.350010e-01 6.669583e-01 13 110466003 110466062 60 + 2.171 2.173 0.007
ENSG00000134871 E042 125.6462759 0.0062826837 8.212303e-01 8.872982e-01 13 110467040 110467081 42 + 2.053 2.072 0.062
ENSG00000134871 E043 111.9089626 0.0019926673 6.920859e-01 7.933777e-01 13 110467082 110467096 15 + 1.986 2.027 0.139
ENSG00000134871 E044 205.4315539 0.0006925835 9.876916e-01 9.963855e-01 13 110469217 110469324 108 + 2.260 2.283 0.077
ENSG00000134871 E045 247.0371262 0.0002149811 1.571826e-01 2.713446e-01 13 110472929 110473150 222 + 2.314 2.372 0.194
ENSG00000134871 E046 0.6234634 0.0206772468 6.982502e-01 7.982612e-01 13 110473467 110473594 128 + 0.158 0.236 0.716
ENSG00000134871 E047 0.1482932 0.0425026107 9.330847e-01   13 110477923 110477947 25 + 0.000 0.094 10.424
ENSG00000134871 E048 0.5483223 0.0201518957 1.000000e+00 1.000000e+00 13 110477948 110478002 55 + 0.158 0.171 0.137
ENSG00000134871 E049 203.0480284 0.0010344265 8.911434e-01 9.344664e-01 13 110478003 110478164 162 + 2.260 2.280 0.067
ENSG00000134871 E050 253.5412547 0.0001961556 1.071276e-03 4.205348e-03 13 110480220 110480390 171 + 2.405 2.350 -0.184
ENSG00000134871 E051 257.1277231 0.0023801057 3.219432e-02 7.622658e-02 13 110482516 110482659 144 + 2.403 2.360 -0.142
ENSG00000134871 E052 0.1817044 0.0397723727 9.329178e-01   13 110482660 110484107 1448 + 0.000 0.094 10.428
ENSG00000134871 E053 225.8707554 0.0002125962 2.806677e-02 6.814550e-02 13 110484905 110485027 123 + 2.260 2.340 0.268
ENSG00000134871 E054 245.1367113 0.0001765953 2.822100e-03 9.740001e-03 13 110485655 110485836 182 + 2.283 2.380 0.327
ENSG00000134871 E055 157.2956448 0.0002313523 1.473440e-01 2.580844e-01 13 110489445 110489508 64 + 2.114 2.182 0.225
ENSG00000134871 E056 198.6234975 0.0001901758 6.090318e-01 7.285933e-01 13 110489711 110489785 75 + 2.237 2.274 0.122
ENSG00000134871 E057 248.8673445 0.0001796457 6.649337e-01 7.726781e-01 13 110491233 110491340 108 + 2.353 2.365 0.040
ENSG00000134871 E058 275.9262152 0.0002347966 1.719261e-01 2.907077e-01 13 110492070 110492177 108 + 2.365 2.420 0.185
ENSG00000134871 E059 212.7095990 0.0021927606 1.477584e-01 2.586365e-01 13 110493211 110493282 72 + 2.239 2.315 0.253
ENSG00000134871 E060 270.4440227 0.0007016746 1.049281e-01 1.979853e-01 13 110495342 110495467 126 + 2.347 2.414 0.223
ENSG00000134871 E061 252.8721558 0.0001839934 1.386853e-02 3.792875e-02 13 110501668 110501784 117 + 2.307 2.390 0.279
ENSG00000134871 E062 271.4698596 0.0001917373 1.147974e-02 3.230687e-02 13 110503121 110503282 162 + 2.337 2.420 0.278
ENSG00000134871 E063 190.8759345 0.0008547012 3.786771e-05 2.195606e-04 13 110503383 110503481 99 + 2.133 2.287 0.515
ENSG00000134871 E064 0.0000000       13 110503697 110503750 54 +      
ENSG00000134871 E065 0.0000000       13 110503751 110503766 16 +      
ENSG00000134871 E066 0.0000000       13 110503767 110503846 80 +      
ENSG00000134871 E067 189.5342344 0.0002309600 3.839625e-08 4.235010e-07 13 110503847 110503975 129 + 2.107 2.292 0.618
ENSG00000134871 E068 91.1394299 0.0003114179 5.070439e-05 2.853347e-04 13 110503976 110503993 18 + 1.784 1.977 0.651
ENSG00000134871 E069 195.5076523 0.0030188835 1.410280e-03 5.340688e-03 13 110504148 110504264 117 + 2.148 2.298 0.501
ENSG00000134871 E070 3.0625140 0.0053950685 6.930667e-02 1.422128e-01 13 110504265 110504595 331 + 0.732 0.467 -1.186
ENSG00000134871 E071 158.6292992 0.0077825385 9.503771e-02 1.829299e-01 13 110506415 110506467 53 + 2.090 2.201 0.372
ENSG00000134871 E072 268.2850526 0.0049707191 5.915379e-03 1.838760e-02 13 110506468 110506606 139 + 2.296 2.435 0.463
ENSG00000134871 E073 0.0000000       13 110507444 110507635 192 +      
ENSG00000134871 E074 407.2050576 0.0005652308 5.052702e-09 6.589697e-08 13 110507935 110508221 287 + 2.462 2.617 0.515
ENSG00000134871 E075 0.1472490 0.0432217413 2.579160e-01   13 110508222 110508330 109 + 0.158 0.000 -12.434
ENSG00000134871 E076 0.6632043 0.0220365470 6.976112e-01 7.977037e-01 13 110511365 110511933 569 + 0.158 0.236 0.718
ENSG00000134871 E077 1166.0732664 0.0091728413 2.381709e-08 2.735753e-07 13 110511934 110513209 1276 + 2.824 3.103 0.930