ENSG00000134769

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000283365 ENSG00000134769 HEK293_OSMI2_2hA HEK293_TMG_2hB DTNA protein_coding protein_coding 10.78106 14.60696 13.55865 0.7834538 0.2679884 -0.1073661 2.4965974 2.39618948 3.100884 0.18195016 0.03064409 0.3705742 0.25062917 0.166166667 0.2289000 0.06273333 0.1900994503 4.781012e-05 FALSE TRUE
ENST00000315456 ENSG00000134769 HEK293_OSMI2_2hA HEK293_TMG_2hB DTNA protein_coding protein_coding 10.78106 14.60696 13.55865 0.7834538 0.2679884 -0.1073661 2.4068941 2.74598116 3.659673 0.41299879 0.09877421 0.4130854 0.21706667 0.191166667 0.2703333 0.07916667 0.3250740315 4.781012e-05 FALSE TRUE
ENST00000592449 ENSG00000134769 HEK293_OSMI2_2hA HEK293_TMG_2hB DTNA protein_coding processed_transcript 10.78106 14.60696 13.55865 0.7834538 0.2679884 -0.1073661 0.2791740 1.23183936 0.000000 0.70847739 0.00000000 -6.9563348 0.02151667 0.082133333 0.0000000 -0.08213333 0.1611514395 4.781012e-05   FALSE
MSTRG.15680.18 ENSG00000134769 HEK293_OSMI2_2hA HEK293_TMG_2hB DTNA protein_coding   10.78106 14.60696 13.55865 0.7834538 0.2679884 -0.1073661 3.3829875 6.18502050 2.905867 0.85433603 0.21279957 -1.0871841 0.30130417 0.419600000 0.2151000 -0.20450000 0.0006903869 4.781012e-05 FALSE TRUE
MSTRG.15680.22 ENSG00000134769 HEK293_OSMI2_2hA HEK293_TMG_2hB DTNA protein_coding   10.78106 14.60696 13.55865 0.7834538 0.2679884 -0.1073661 0.4808059 0.09803281 1.261650 0.09803281 0.11444093 3.5571597 0.05009167 0.006133333 0.0934000 0.08726667 0.0067485841 4.781012e-05 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000134769 E001 0.0000000       18 34492598 34492720 123 +      
ENSG00000134769 E002 0.0000000       18 34492721 34492905 185 +      
ENSG00000134769 E003 1.0705211 0.0118522330 6.382116e-01 7.518875e-01 18 34492906 34493290 385 + 0.288 0.371 0.517
ENSG00000134769 E004 1.5467235 0.0099323580 9.058701e-01 9.441397e-01 18 34493291 34493303 13 + 0.410 0.429 0.103
ENSG00000134769 E005 2.4720719 0.0493647570 6.001234e-01 7.214207e-01 18 34493304 34493313 10 + 0.505 0.602 0.448
ENSG00000134769 E006 3.1083225 0.0610443651 9.330337e-01 9.618097e-01 18 34493314 34493316 3 + 0.617 0.636 0.081
ENSG00000134769 E007 13.5155285 0.0013139669 1.178507e-01 2.168523e-01 18 34493317 34493330 14 + 1.238 1.096 -0.509
ENSG00000134769 E008 18.7493885 0.0011007959 1.626466e-01 2.786003e-01 18 34493331 34493355 25 + 1.355 1.244 -0.389
ENSG00000134769 E009 18.4193909 0.0010629356 1.094292e-01 2.047207e-01 18 34493356 34493360 5 + 1.355 1.227 -0.449
ENSG00000134769 E010 22.8189644 0.0264611254 2.138363e-01 3.430568e-01 18 34493361 34493370 10 + 1.443 1.311 -0.455
ENSG00000134769 E011 26.5801953 0.0282257172 4.086183e-01 5.522255e-01 18 34493371 34493388 18 + 1.485 1.397 -0.304
ENSG00000134769 E012 27.5306230 0.0286364786 4.630311e-01 6.028815e-01 18 34493389 34493409 21 + 1.494 1.416 -0.269
ENSG00000134769 E013 26.5276370 0.0083229137 8.812578e-01 9.278958e-01 18 34493410 34493429 20 + 1.447 1.431 -0.055
ENSG00000134769 E014 47.3040240 0.0118102270 5.951534e-01 7.172895e-01 18 34493430 34493514 85 + 1.704 1.663 -0.141
ENSG00000134769 E015 0.4804688 0.0211683504 6.173879e-01 7.352127e-01 18 34493903 34493914 12 + 0.212 0.126 -0.895
ENSG00000134769 E016 1.5812806 0.0093471642 6.152266e-01 7.335442e-01 18 34493915 34493958 44 + 0.460 0.371 -0.480
ENSG00000134769 E017 1.1008118 0.0114136261 7.861058e-01 8.630053e-01 18 34493959 34493971 13 + 0.353 0.304 -0.310
ENSG00000134769 E018 1.1008118 0.0114136261 7.861058e-01 8.630053e-01 18 34493972 34493981 10 + 0.353 0.304 -0.310
ENSG00000134769 E019 2.2111754 0.0067485561 3.598519e-01 5.041631e-01 18 34493982 34494021 40 + 0.583 0.429 -0.743
ENSG00000134769 E020 0.1472490 0.0434577748 5.314911e-01   18 34494529 34494589 61 + 0.119 0.000 -12.996
ENSG00000134769 E021 0.1515154 0.0434650194 5.311902e-01   18 34496547 34496835 289 + 0.119 0.000 -12.996
ENSG00000134769 E022 0.2214452 0.0456370325 4.477004e-01   18 34504043 34504157 115 + 0.000 0.127 12.133
ENSG00000134769 E023 1.8507865 0.1171703773 4.119639e-01 5.555183e-01 18 34513515 34513937 423 + 0.546 0.369 -0.911
ENSG00000134769 E024 0.0000000       18 34557979 34558135 157 +      
ENSG00000134769 E025 0.0000000       18 34593084 34593167 84 +      
ENSG00000134769 E026 0.0000000       18 34593318 34593334 17 +      
ENSG00000134769 E027 0.0000000       18 34593335 34593337 3 +      
ENSG00000134769 E028 0.0000000       18 34593338 34593338 1 +      
ENSG00000134769 E029 0.0000000       18 34593339 34593357 19 +      
ENSG00000134769 E030 0.0000000       18 34593358 34593364 7 +      
ENSG00000134769 E031 0.0000000       18 34593365 34593409 45 +      
ENSG00000134769 E032 0.1482932 0.0412819820 4.512013e-01   18 34593410 34593538 129 + 0.000 0.126 12.154
ENSG00000134769 E033 0.2934659 0.0293019763 9.594603e-01   18 34595786 34595918 133 + 0.119 0.126 0.103
ENSG00000134769 E034 1.2963344 0.0140570310 5.574093e-01 6.858225e-01 18 34656241 34656405 165 + 0.410 0.304 -0.631
ENSG00000134769 E035 0.3332198 0.0303151657 9.551224e-01   18 34656922 34657019 98 + 0.119 0.126 0.105
ENSG00000134769 E036 0.4407149 0.0215079172 6.156573e-01 7.338732e-01 18 34662854 34662980 127 + 0.212 0.126 -0.896
ENSG00000134769 E037 43.5008192 0.0005173258 6.592193e-01 7.680824e-01 18 34679468 34679536 69 + 1.662 1.635 -0.089
ENSG00000134769 E038 42.6045023 0.0005062206 6.031713e-01 7.240188e-01 18 34679537 34679592 56 + 1.656 1.625 -0.104
ENSG00000134769 E039 0.7363589 0.0155128669 2.140267e-02 5.443682e-02 18 34683482 34683694 213 + 0.410 0.000 -15.378
ENSG00000134769 E040 0.1472490 0.0434577748 5.314911e-01   18 34684174 34684269 96 + 0.119 0.000 -12.996
ENSG00000134769 E041 0.1451727 0.0437361666 5.313652e-01   18 34689412 34689570 159 + 0.118 0.000 -12.994
ENSG00000134769 E042 1.0382438 0.0117601670 6.181319e-02 1.296724e-01 18 34708085 34708173 89 + 0.460 0.126 -2.481
ENSG00000134769 E043 0.9566712 0.2635054414 5.751308e-01 7.008362e-01 18 34708174 34708226 53 + 0.353 0.225 -0.888
ENSG00000134769 E044 0.2214452 0.0456370325 4.477004e-01   18 34709356 34709373 18 + 0.000 0.127 12.133
ENSG00000134769 E045 0.2214452 0.0456370325 4.477004e-01   18 34709374 34709503 130 + 0.000 0.127 12.133
ENSG00000134769 E046 0.0000000       18 34709504 34709517 14 +      
ENSG00000134769 E047 0.1451727 0.0437361666 5.313652e-01   18 34710261 34710283 23 + 0.118 0.000 -12.994
ENSG00000134769 E048 0.5879639 0.0213215703 3.526294e-01 4.968805e-01 18 34710284 34710293 10 + 0.288 0.126 -1.481
ENSG00000134769 E049 0.7394793 0.0153787590 1.985206e-01 3.243425e-01 18 34710294 34710296 3 + 0.353 0.126 -1.896
ENSG00000134769 E050 0.7394793 0.0153787590 1.985206e-01 3.243425e-01 18 34710297 34710297 1 + 0.353 0.126 -1.896
ENSG00000134769 E051 0.8867284 0.0144102490 1.115666e-01 2.078571e-01 18 34710298 34710317 20 + 0.410 0.126 -2.218
ENSG00000134769 E052 1.4767686 0.2235247517 1.779714e-01 2.985896e-01 18 34710318 34710426 109 + 0.545 0.220 -1.927
ENSG00000134769 E053 0.8835061 0.1753765337 5.202142e-01 6.542056e-01 18 34710427 34710445 19 + 0.353 0.221 -0.920
ENSG00000134769 E054 0.1472490 0.0434577748 5.314911e-01   18 34729463 34729546 84 + 0.119 0.000 -12.996
ENSG00000134769 E055 30.1728094 0.0006689504 4.115464e-01 5.550975e-01 18 34755976 34755976 1 + 1.471 1.519 0.167
ENSG00000134769 E056 61.7742819 0.0004037089 4.761186e-01 6.148109e-01 18 34755977 34756043 67 + 1.785 1.814 0.097
ENSG00000134769 E057 0.1817044 0.0401955978 4.489356e-01   18 34757158 34757288 131 + 0.000 0.126 12.163
ENSG00000134769 E058 0.6256415 0.0175482719 3.527015e-01 4.969414e-01 18 34763158 34763258 101 + 0.288 0.126 -1.479
ENSG00000134769 E059 0.4417591 0.0805127770 5.494946e-01 6.792164e-01 18 34765782 34765865 84 + 0.118 0.222 1.093
ENSG00000134769 E060 78.9837437 0.0004026334 1.606074e-01 2.759331e-01 18 34765961 34766041 81 + 1.875 1.928 0.176
ENSG00000134769 E061 0.3268771 0.0299413937 9.548395e-01   18 34791863 34791991 129 + 0.119 0.126 0.106
ENSG00000134769 E062 138.6522054 0.0002558966 4.533318e-03 1.463591e-02 18 34794037 34794250 214 + 2.101 2.182 0.272
ENSG00000134769 E063 89.0997301 0.0003333032 2.069133e-01 3.348605e-01 18 34806219 34806304 86 + 1.931 1.975 0.147
ENSG00000134769 E064 114.0607520 0.0005180375 1.509073e-03 5.665438e-03 18 34811959 34812113 155 + 2.002 2.106 0.347
ENSG00000134769 E065 0.5503986 0.0219689921 5.190867e-01 6.532166e-01 18 34815607 34815908 302 + 0.119 0.224 1.108
ENSG00000134769 E066 109.2082258 0.0003001271 9.598315e-02 1.843518e-01 18 34815909 34816014 106 + 2.017 2.070 0.177
ENSG00000134769 E067 0.0000000       18 34817962 34817981 20 +      
ENSG00000134769 E068 1.8100876 0.0098926631 4.468390e-01 5.883004e-01 18 34817982 34818089 108 + 0.505 0.371 -0.701
ENSG00000134769 E069 1.0382438 0.0117601670 6.181319e-02 1.296724e-01 18 34818090 34818163 74 + 0.460 0.126 -2.481
ENSG00000134769 E070 139.0436091 0.0063922805 1.254954e-01 2.278604e-01 18 34818164 34818330 167 + 2.109 2.182 0.244
ENSG00000134769 E071 0.0000000       18 34818381 34818381 1 +      
ENSG00000134769 E072 0.0000000       18 34818382 34818390 9 +      
ENSG00000134769 E073 0.0000000       18 34818391 34818391 1 +      
ENSG00000134769 E074 0.0000000       18 34818392 34818447 56 +      
ENSG00000134769 E075 0.0000000       18 34818448 34818472 25 +      
ENSG00000134769 E076 0.0000000       18 34818473 34818647 175 +      
ENSG00000134769 E077 0.0000000       18 34820597 34820697 101 +      
ENSG00000134769 E078 59.0919194 0.0067270109 9.474723e-02 1.824923e-01 18 34820791 34820799 9 + 1.727 1.827 0.337
ENSG00000134769 E079 110.3277666 0.0009218726 1.666620e-05 1.052313e-04 18 34820800 34820915 116 + 1.965 2.116 0.505
ENSG00000134769 E080 0.1451727 0.0437361666 5.313652e-01   18 34822362 34822566 205 + 0.118 0.000 -12.994
ENSG00000134769 E081 0.2944980 0.3664530165 3.211195e-01   18 34825267 34825275 9 + 0.211 0.000 -13.076
ENSG00000134769 E082 95.5549831 0.0008556190 3.134303e-04 1.434400e-03 18 34827593 34827676 84 + 1.915 2.048 0.447
ENSG00000134769 E083 69.6926967 0.0012140585 1.092449e-20 7.608870e-19 18 34829041 34829328 288 + 1.576 2.010 1.464
ENSG00000134769 E084 1.1791501 0.0136321445 3.486509e-02 8.139054e-02 18 34829400 34829489 90 + 0.505 0.126 -2.703
ENSG00000134769 E085 0.2944980 0.3664530165 3.211195e-01   18 34838094 34838171 78 + 0.211 0.000 -13.076
ENSG00000134769 E086 0.0000000       18 34838745 34838837 93 +      
ENSG00000134769 E087 31.1379403 0.0056550771 7.171629e-06 4.925299e-05 18 34848296 34848383 88 + 1.650 1.320 -1.133
ENSG00000134769 E088 0.0000000       18 34851786 34851830 45 +      
ENSG00000134769 E089 17.1068784 0.0237429556 1.036159e-02 2.965393e-02 18 34851831 34851833 3 + 1.385 1.097 -1.015
ENSG00000134769 E090 30.2431492 0.0264034454 8.800532e-03 2.578503e-02 18 34851834 34851928 95 + 1.611 1.342 -0.927
ENSG00000134769 E091 31.7799910 0.0541416084 4.300811e-02 9.655687e-02 18 34858285 34858398 114 + 1.630 1.368 -0.900
ENSG00000134769 E092 0.0000000       18 34858636 34858706 71 +      
ENSG00000134769 E093 15.1529092 0.0309665287 3.279662e-02 7.740017e-02 18 34863966 34863969 4 + 1.323 1.063 -0.926
ENSG00000134769 E094 28.8481315 0.0255899871 1.925235e-03 6.994131e-03 18 34863970 34864062 93 + 1.614 1.288 -1.121
ENSG00000134769 E095 1.5520962 0.7226104182 6.739444e-01 7.795102e-01 18 34866111 34866131 21 + 0.460 0.325 -0.758
ENSG00000134769 E096 24.1549209 0.0018896293 4.241344e-01 5.671221e-01 18 34866132 34868812 2681 + 1.367 1.421 0.186
ENSG00000134769 E097 0.0000000       18 34875237 34875238 2 +      
ENSG00000134769 E098 30.4742771 0.0133451074 2.545675e-04 1.194242e-03 18 34875239 34875398 160 + 1.637 1.321 -1.086
ENSG00000134769 E099 26.4023048 0.0009889482 4.044662e-07 3.643947e-06 18 34877719 34877808 90 + 1.594 1.244 -1.212
ENSG00000134769 E100 39.2764272 0.0005538135 3.839466e-05 2.222826e-04 18 34879551 34879719 169 + 1.715 1.482 -0.792
ENSG00000134769 E101 19.5053751 0.0009388664 8.585401e-02 1.687498e-01 18 34882069 34882088 20 + 1.378 1.244 -0.470
ENSG00000134769 E102 32.5784060 0.0006115586 8.996586e-04 3.612880e-03 18 34882089 34882201 113 + 1.624 1.420 -0.700
ENSG00000134769 E103 21.0519172 0.0009106145 1.512529e-04 7.526372e-04 18 34884728 34884776 49 + 1.471 1.181 -1.010
ENSG00000134769 E104 26.2335097 0.0007732206 1.124672e-08 1.373467e-07 18 34887766 34887983 218 + 1.601 1.200 -1.389
ENSG00000134769 E105 213.5715379 0.0056186560 1.072636e-01 2.014870e-01 18 34887984 34890299 2316 + 2.367 2.293 -0.244
ENSG00000134769 E106 202.8454702 0.0153886043 8.216320e-02 1.629323e-01 18 34890300 34891844 1545 + 2.250 2.355 0.349