ENSG00000134744

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000257177 ENSG00000134744 HEK293_OSMI2_2hA HEK293_TMG_2hB TUT4 protein_coding protein_coding 16.50757 6.906213 22.68641 2.34934 1.600996 1.71441 0.3353062 1.3608784 0.06876525 0.2190683 0.06876525 -4.1213976 0.04637083 0.25460000 0.003466667 -0.25113333 6.803089e-04 8.788131e-20 FALSE TRUE
ENST00000371544 ENSG00000134744 HEK293_OSMI2_2hA HEK293_TMG_2hB TUT4 protein_coding protein_coding 16.50757 6.906213 22.68641 2.34934 1.600996 1.71441 0.2249482 0.6698453 0.12886338 0.3013008 0.12886338 -2.2915404 0.02387917 0.09790000 0.005066667 -0.09283333 1.377846e-02 8.788131e-20 FALSE TRUE
ENST00000470212 ENSG00000134744 HEK293_OSMI2_2hA HEK293_TMG_2hB TUT4 protein_coding retained_intron 16.50757 6.906213 22.68641 2.34934 1.600996 1.71441 0.9773508 0.4742673 1.45687935 0.1864694 0.17860584 1.5988747 0.06570000 0.06843333 0.064833333 -0.00360000 9.315357e-01 8.788131e-20   FALSE
ENST00000471623 ENSG00000134744 HEK293_OSMI2_2hA HEK293_TMG_2hB TUT4 protein_coding protein_coding 16.50757 6.906213 22.68641 2.34934 1.600996 1.71441 0.5405260 1.2338855 0.65834835 0.7699991 0.65834835 -0.8961815 0.05485833 0.13123333 0.028766667 -0.10246667 3.860991e-01 8.788131e-20 FALSE FALSE
ENST00000474453 ENSG00000134744 HEK293_OSMI2_2hA HEK293_TMG_2hB TUT4 protein_coding protein_coding 16.50757 6.906213 22.68641 2.34934 1.600996 1.71441 2.1230268 1.2981147 1.91615278 0.6578939 1.42057932 0.5582331 0.13957083 0.14980000 0.079466667 -0.07033333 8.684633e-01 8.788131e-20 FALSE TRUE
ENST00000494469 ENSG00000134744 HEK293_OSMI2_2hA HEK293_TMG_2hB TUT4 protein_coding protein_coding 16.50757 6.906213 22.68641 2.34934 1.600996 1.71441 0.7399048 0.4481654 0.00000000 0.4481654 0.00000000 -5.5177965 0.07767083 0.04083333 0.000000000 -0.04083333 5.172531e-01 8.788131e-20 FALSE FALSE
MSTRG.1203.10 ENSG00000134744 HEK293_OSMI2_2hA HEK293_TMG_2hB TUT4 protein_coding   16.50757 6.906213 22.68641 2.34934 1.600996 1.71441 1.8185474 0.2387355 2.89320289 0.2387355 0.21137936 3.5449613 0.09507917 0.02176667 0.127766667 0.10600000 8.957140e-02 8.788131e-20 TRUE TRUE
MSTRG.1203.11 ENSG00000134744 HEK293_OSMI2_2hA HEK293_TMG_2hB TUT4 protein_coding   16.50757 6.906213 22.68641 2.34934 1.600996 1.71441 4.1618495 0.0000000 7.64777175 0.0000000 0.44527832 9.5807808 0.20092917 0.00000000 0.342833333 0.34283333 8.788131e-20 8.788131e-20 FALSE TRUE
MSTRG.1203.16 ENSG00000134744 HEK293_OSMI2_2hA HEK293_TMG_2hB TUT4 protein_coding   16.50757 6.906213 22.68641 2.34934 1.600996 1.71441 1.1646140 0.0771971 1.99414843 0.0771971 0.18555720 4.5225653 0.05175833 0.02720000 0.089266667 0.06206667 1.955201e-01 8.788131e-20 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000134744 E001 0.0000000       1 52408282 52408284 3 -      
ENSG00000134744 E002 0.0000000       1 52408285 52408460 176 -      
ENSG00000134744 E003 0.1451727 0.0428958301 1.000000e+00   1 52409486 52409606 121 - 0.066 0.000 -8.174
ENSG00000134744 E004 1.9458050 0.0148994100 4.064081e-06 2.950933e-05 1 52423275 52423402 128 - 0.066 0.836 5.158
ENSG00000134744 E005 2.8335750 0.0060257043 1.887808e-09 2.656857e-08 1 52423403 52423429 27 - 0.066 1.003 5.791
ENSG00000134744 E006 11.2640066 0.0017030132 2.733888e-36 7.233616e-34 1 52423430 52423460 31 - 0.174 1.593 6.280
ENSG00000134744 E007 12.6969638 0.0014979315 7.401343e-41 2.696466e-38 1 52423461 52423530 70 - 0.174 1.641 6.442
ENSG00000134744 E008 8.2372748 0.0021347903 2.234946e-25 2.527784e-23 1 52423531 52423562 32 - 0.174 1.450 5.790
ENSG00000134744 E009 7.7589841 0.0021469323 1.744589e-23 1.633738e-21 1 52423563 52423594 32 - 0.174 1.419 5.683
ENSG00000134744 E010 7.1310929 0.0028491101 8.198088e-24 7.968718e-22 1 52423595 52423635 41 - 0.123 1.408 6.229
ENSG00000134744 E011 9.2830098 0.0018389938 4.593854e-16 1.812353e-14 1 52423636 52423712 77 - 0.518 1.419 3.460
ENSG00000134744 E012 8.8705275 0.0093716052 1.259146e-08 1.523934e-07 1 52423713 52423730 18 - 0.647 1.325 2.548
ENSG00000134744 E013 37.7800868 0.0065188301 5.872062e-07 5.126236e-06 1 52423731 52423797 67 - 1.397 1.764 1.254
ENSG00000134744 E014 65.4321773 0.0021229424 1.184686e-06 9.685206e-06 1 52423798 52423867 70 - 1.671 1.937 0.897
ENSG00000134744 E015 73.9889234 0.0004655858 4.059823e-07 3.655693e-06 1 52423868 52423913 46 - 1.728 1.974 0.830
ENSG00000134744 E016 78.7444786 0.0049074383 1.064938e-03 4.183759e-03 1 52423914 52424002 89 - 1.771 1.970 0.671
ENSG00000134744 E017 7.6486533 0.0994253455 2.057750e-01 3.333914e-01 1 52424003 52425348 1346 - 0.807 1.066 0.976
ENSG00000134744 E018 114.0412300 0.0034403155 5.977162e-04 2.525324e-03 1 52425349 52425507 159 - 1.936 2.114 0.598
ENSG00000134744 E019 94.9300771 0.0013273119 5.350334e-03 1.688413e-02 1 52431013 52431118 106 - 1.869 2.009 0.472
ENSG00000134744 E020 48.0590596 0.0144617563 1.304874e-01 2.348378e-01 1 52431119 52431125 7 - 1.580 1.721 0.478
ENSG00000134744 E021 88.6175006 0.0010984058 4.658410e-03 1.498136e-02 1 52431126 52431223 98 - 1.840 1.983 0.482
ENSG00000134744 E022 47.3459650 0.0006172350 1.382069e-01 2.455941e-01 1 52431224 52431246 23 - 1.586 1.689 0.352
ENSG00000134744 E023 61.0892625 0.0003766288 1.477570e-01 2.586365e-01 1 52431247 52431287 41 - 1.694 1.786 0.311
ENSG00000134744 E024 58.4459674 0.0073820354 4.133320e-02 9.349547e-02 1 52431288 52431316 29 - 1.660 1.811 0.514
ENSG00000134744 E025 97.1624497 0.0048398723 5.474408e-03 1.722002e-02 1 52431317 52431460 144 - 1.873 2.036 0.547
ENSG00000134744 E026 3.0937391 0.0050809594 9.257351e-01 9.572550e-01 1 52431461 52433088 1628 - 0.559 0.555 -0.019
ENSG00000134744 E027 3.2786552 0.0047084435 2.946891e-02 7.090974e-02 1 52433089 52435364 2276 - 0.647 0.217 -2.411
ENSG00000134744 E028 71.2818958 0.0012979373 2.627676e-01 4.005687e-01 1 52435365 52435465 101 - 1.765 1.839 0.251
ENSG00000134744 E029 130.0902698 0.0002887041 8.077602e-01 8.778385e-01 1 52436755 52436963 209 - 2.037 2.063 0.087
ENSG00000134744 E030 24.8976008 0.0017689455 5.644596e-01 6.917520e-01 1 52436964 52436975 12 - 1.322 1.386 0.222
ENSG00000134744 E031 18.0810600 0.0010406126 8.185512e-01 8.853318e-01 1 52436976 52436978 3 - 1.197 1.235 0.134
ENSG00000134744 E032 19.3890332 0.0027289375 3.370726e-01 4.809336e-01 1 52436979 52437701 723 - 1.206 1.310 0.366
ENSG00000134744 E033 80.6377950 0.0079793078 7.747463e-01 8.548271e-01 1 52438220 52438335 116 - 1.840 1.836 -0.014
ENSG00000134744 E034 59.5881257 0.0041078576 7.892565e-01 8.651057e-01 1 52445787 52445869 83 - 1.701 1.734 0.110
ENSG00000134744 E035 54.9276467 0.0004702770 3.019999e-01 4.438314e-01 1 52445957 52446004 48 - 1.654 1.728 0.250
ENSG00000134744 E036 80.0959776 0.0006294237 2.997468e-01 4.413281e-01 1 52446265 52446399 135 - 1.820 1.885 0.219
ENSG00000134744 E037 52.6583831 0.0058432693 2.004574e-01 3.267885e-01 1 52446400 52446442 43 - 1.634 1.733 0.334
ENSG00000134744 E038 52.1823061 0.0042190371 1.504394e-01 2.622839e-01 1 52446590 52446667 78 - 1.628 1.733 0.357
ENSG00000134744 E039 57.0078793 0.0004047679 8.297594e-01 8.931313e-01 1 52458336 52458449 114 - 1.683 1.711 0.097
ENSG00000134744 E040 0.0000000       1 52460957 52461133 177 -      
ENSG00000134744 E041 66.2108142 0.0013131641 7.293114e-01 8.215237e-01 1 52461134 52461223 90 - 1.755 1.753 -0.005
ENSG00000134744 E042 68.2626432 0.0003825782 5.112260e-01 6.462973e-01 1 52461513 52461616 104 - 1.755 1.804 0.168
ENSG00000134744 E043 0.1817044 0.0401754530 1.148140e-01   1 52461617 52461711 95 - 0.000 0.217 12.928
ENSG00000134744 E044 51.8707109 0.0004132801 8.348014e-01 8.965823e-01 1 52461712 52461769 58 - 1.643 1.671 0.098
ENSG00000134744 E045 5.5317721 0.0029232514 4.943230e-01 6.312767e-01 1 52461770 52462090 321 - 0.721 0.834 0.451
ENSG00000134744 E046 2.9056270 0.2628380022 2.770109e-01 4.165157e-01 1 52462178 52462479 302 - 0.422 0.791 1.659
ENSG00000134744 E047 13.8012323 0.0013306644 1.976915e-01 3.233337e-01 1 52462480 52463777 1298 - 1.054 1.201 0.528
ENSG00000134744 E048 0.4439371 0.0215653855 5.666172e-01 6.935662e-01 1 52464963 52465069 107 - 0.174 0.000 -12.566
ENSG00000134744 E049 71.8271743 0.0009785947 3.107106e-02 7.405106e-02 1 52465070 52465173 104 - 1.809 1.712 -0.329
ENSG00000134744 E050 67.3925905 0.0017838686 7.361624e-03 2.215750e-02 1 52468181 52468267 87 - 1.790 1.653 -0.461
ENSG00000134744 E051 0.8491631 0.0165205865 3.367861e-01 4.806587e-01 1 52468268 52468490 223 - 0.174 0.361 1.398
ENSG00000134744 E052 69.7538409 0.0043299709 5.228558e-02 1.132298e-01 1 52471952 52472102 151 - 1.795 1.697 -0.332
ENSG00000134744 E053 219.0047412 0.0002062918 4.864565e-05 2.749089e-04 1 52474832 52475535 704 - 2.288 2.185 -0.346
ENSG00000134744 E054 51.7335651 0.0025824305 1.151855e-01 2.131198e-01 1 52477708 52477737 30 - 1.663 1.580 -0.285
ENSG00000134744 E055 91.4124117 0.0027167517 3.395693e-05 1.992825e-04 1 52477738 52477882 145 - 1.931 1.724 -0.701
ENSG00000134744 E056 101.5886258 0.0003197678 6.866831e-11 1.245954e-09 1 52481423 52481635 213 - 1.991 1.695 -0.999
ENSG00000134744 E057 49.6561358 0.0018457037 6.826818e-04 2.835793e-03 1 52481804 52481842 39 - 1.674 1.460 -0.732
ENSG00000134744 E058 59.6156844 0.0004323432 2.744583e-04 1.275864e-03 1 52481843 52481923 81 - 1.747 1.548 -0.679
ENSG00000134744 E059 71.6108676 0.0003890899 6.447919e-08 6.796900e-07 1 52488909 52489035 127 - 1.839 1.548 -0.987
ENSG00000134744 E060 46.6520340 0.0033684504 7.145516e-05 3.872462e-04 1 52490732 52490801 70 - 1.655 1.374 -0.963
ENSG00000134744 E061 33.2300257 0.0182749208 1.780761e-01 2.987256e-01 1 52493611 52493662 52 - 1.485 1.367 -0.407
ENSG00000134744 E062 42.0903159 0.0192266370 7.755977e-01 8.554451e-01 1 52495427 52495515 89 - 1.559 1.556 -0.011
ENSG00000134744 E063 66.5417575 0.0077227085 1.067124e-03 4.191304e-03 1 52497006 52497183 178 - 1.798 1.581 -0.737
ENSG00000134744 E064 67.9225901 0.0003869641 2.908981e-09 3.958467e-08 1 52509596 52509712 117 - 1.825 1.488 -1.146
ENSG00000134744 E065 1.8112455 0.0094221223 7.178056e-02 1.463129e-01 1 52514778 52515890 1113 - 0.297 0.627 1.718
ENSG00000134744 E066 68.8618926 0.0021815137 1.035667e-09 1.531886e-08 1 52515891 52516054 164 - 1.836 1.460 -1.281
ENSG00000134744 E067 129.0697040 0.0002743077 2.314958e-24 2.377029e-22 1 52525563 52526019 457 - 2.113 1.659 -1.529
ENSG00000134744 E068 29.8591378 0.0078968997 1.554101e-03 5.810879e-03 1 52526020 52526049 30 - 1.473 1.182 -1.013
ENSG00000134744 E069 78.4521801 0.0008844888 5.509727e-11 1.015272e-09 1 52526050 52526373 324 - 1.891 1.531 -1.220
ENSG00000134744 E070 1.9111408 0.6246369439 9.549669e-01 9.757608e-01 1 52529768 52529873 106 - 0.420 0.449 0.155
ENSG00000134744 E071 0.1451727 0.0428958301 1.000000e+00   1 52529874 52529885 12 - 0.066 0.000 -10.884
ENSG00000134744 E072 0.2924217 0.0272846509 1.000000e+00   1 52534987 52535122 136 - 0.123 0.000 -11.964
ENSG00000134744 E073 0.2966881 0.0290785164 1.000000e+00   1 52538524 52538643 120 - 0.123 0.000 -11.953
ENSG00000134744 E074 29.2581906 0.0006686401 5.106095e-03 1.621901e-02 1 52552931 52553090 160 - 1.453 1.235 -0.759
ENSG00000134744 E075 1.3223456 0.0872482090 7.921528e-01 8.670613e-01 1 52553091 52553100 10 - 0.297 0.363 0.415
ENSG00000134744 E076 1.2014125 0.4707164614 7.763917e-01 8.560018e-01 1 52553433 52553494 62 - 0.299 0.350 0.322